Wall clock time and date at job start Tue Mar 31 2020 11:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99796 * 2 1 4 4 N 1.46901 * 109.46803 * 124.12892 * 3 2 1 5 5 C 1.46896 * 110.99870 * 299.82681 * 4 3 2 6 6 C 1.50698 * 109.47422 * 288.28565 * 5 4 3 7 7 H 1.08005 * 119.99861 * 355.14129 * 6 5 4 8 8 C 1.37879 * 120.00041 * 175.14013 * 6 5 4 9 9 N 1.31515 * 119.99868 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00060 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46740 * 90.00118 * 10 8 6 12 12 H 1.48496 * 109.46859 * 210.00124 * 10 8 6 13 13 H 1.48491 * 109.47065 * 330.00506 * 10 8 6 14 14 C 1.46902 * 111.00172 * 63.78288 * 4 3 2 15 15 C 1.50700 * 109.46993 * 66.04283 * 14 4 3 16 16 C 1.39922 * 125.87940 * 95.00091 * 15 14 4 17 17 C 1.35317 * 107.93165 * 179.72036 * 16 15 14 18 18 N 1.35222 * 107.71327 * 0.41525 * 17 16 15 19 19 C 1.40176 * 126.05241 * 179.83925 * 18 17 16 20 20 C 1.38871 * 120.05753 * 359.97438 * 19 18 17 21 21 C 1.38103 * 119.98733 * 180.29909 * 20 19 18 22 22 C 1.38265 * 120.09259 * 359.71527 * 21 20 19 23 23 C 1.38488 * 120.10693 * 0.02562 * 22 21 20 24 24 F 1.35100 * 119.99215 * 179.97438 * 23 22 21 25 25 C 1.38366 * 120.01386 * 359.97438 * 23 22 21 26 26 N 1.30874 * 125.88113 * 274.97763 * 15 14 4 27 27 H 1.08003 * 119.99938 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00164 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00164 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46774 * 4.13109 * 3 2 1 31 31 H 1.08999 * 109.46645 * 244.12669 * 3 2 1 32 32 H 1.08995 * 109.47428 * 48.28989 * 5 4 3 33 33 H 1.09005 * 109.47047 * 168.28978 * 5 4 3 34 34 H 0.96998 * 119.99896 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.46635 * 306.04598 * 14 4 3 36 36 H 1.08991 * 109.47163 * 186.04219 * 14 4 3 37 37 H 1.07999 * 126.03212 * 0.02562 * 16 15 14 38 38 H 1.08003 * 126.14079 * 180.26568 * 17 16 15 39 39 H 1.07998 * 120.00654 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.95915 * 179.69872 * 21 20 19 41 41 H 1.08001 * 119.94870 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.04357 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9813 1.3407 1.1465 5 6 2.2461 1.2251 2.4130 6 6 1.4919 2.5032 2.6746 7 1 1.6140 3.3475 2.0123 8 6 0.6460 2.5948 3.7596 9 7 -0.0126 3.7101 3.9876 10 14 0.4342 1.1343 4.9048 11 1 1.4386 1.2112 5.9959 12 1 -0.9317 1.1557 5.4868 13 1 0.6277 -0.1250 4.1419 14 6 4.0047 0.2929 1.0342 15 6 4.8946 0.5843 -0.1466 16 6 6.1184 1.2613 -0.1038 17 6 6.6095 1.3141 -1.3636 18 7 5.7215 0.6996 -2.1775 19 6 5.8478 0.5384 -3.5642 20 6 6.9652 1.0339 -4.2232 21 6 7.0851 0.8798 -5.5903 22 6 6.0967 0.2273 -6.3037 23 6 4.9833 -0.2731 -5.6498 24 9 4.0186 -0.9099 -6.3492 25 6 4.8586 -0.1212 -4.2801 26 7 4.6560 0.2475 -1.3885 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3574 2.1323 0.0740 31 1 2.6335 1.3956 -0.9247 32 1 1.5430 0.3946 2.3505 33 1 2.9494 1.0453 3.2262 34 1 -0.6074 3.7747 4.7510 35 1 3.5210 -0.6739 0.8948 36 1 4.6041 0.2715 1.9443 37 1 6.5903 1.6655 0.7795 38 1 7.5419 1.7680 -1.6653 39 1 7.7382 1.5437 -3.6673 40 1 7.9521 1.2696 -6.1030 41 1 6.1927 0.1084 -7.3729 42 1 3.9906 -0.5116 -3.7696 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590002654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:21 Heat of formation + Delta-G solvation = 101.949826 kcal Electronic energy + Delta-G solvation = -25212.809801 eV Core-core repulsion = 21496.454881 eV Total energy + Delta-G solvation = -3716.354919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.21173 -41.61802 -39.17122 -37.45584 -33.85799 -32.74890 -32.09848 -31.35172 -30.13707 -29.59803 -27.90413 -26.56108 -24.11606 -23.43937 -22.83441 -20.87960 -20.80246 -19.92324 -18.76391 -18.51504 -16.71150 -16.65269 -16.49360 -16.24322 -15.99648 -15.47620 -15.18961 -14.62143 -14.44127 -14.21608 -13.99235 -13.88101 -13.72691 -13.37393 -12.94161 -12.66021 -12.41385 -12.27708 -12.20667 -11.87809 -11.60014 -11.33715 -11.01067 -10.74557 -10.63219 -10.56691 -10.44325 -10.16568 -9.86558 -9.33242 -9.29023 -9.13282 -8.72968 -8.52826 -8.22130 -7.37721 -6.01692 -3.98235 0.45532 0.74685 1.98581 2.21119 2.76148 2.89489 3.26337 3.30224 3.38073 3.40131 3.80198 4.21755 4.44882 4.48368 4.56492 4.63804 4.73205 4.92891 4.99094 5.07123 5.29082 5.31794 5.52146 5.54221 5.61714 5.65770 5.74784 5.81880 5.83423 5.88365 5.94801 6.11639 6.18471 6.33618 6.43345 6.59282 6.71621 6.83347 7.01169 7.01822 7.18192 7.33602 7.60727 7.66317 7.89808 8.00836 8.68559 9.08246 9.60306 11.11598 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021020 B = 0.003006 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.734546 B = 9311.623877 C =10069.406669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.177 4.177 3 C 0.088 3.912 4 N -0.513 5.513 5 C 0.159 3.841 6 C -0.502 4.502 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.902 5.902 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.266 1.266 14 C 0.121 3.879 15 C 0.114 3.886 16 C -0.230 4.230 17 C 0.044 3.956 18 N -0.335 5.335 19 C 0.208 3.792 20 C -0.160 4.160 21 C -0.061 4.061 22 C -0.174 4.174 23 C 0.127 3.873 24 F -0.133 7.133 25 C -0.163 4.163 26 N -0.283 5.283 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.002 0.998 33 H 0.022 0.978 34 H 0.263 0.737 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.157 0.843 38 H 0.176 0.824 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.022 -7.931 -17.780 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.197 4.197 3 C -0.040 4.040 4 N -0.236 5.236 5 C 0.033 3.967 6 C -0.540 4.540 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.541 5.541 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.191 1.191 14 C -0.009 4.009 15 C -0.054 4.054 16 C -0.258 4.258 17 C -0.097 4.097 18 N -0.111 5.111 19 C 0.114 3.886 20 C -0.181 4.181 21 C -0.080 4.080 22 C -0.193 4.193 23 C 0.107 3.893 24 F -0.112 7.112 25 C -0.184 4.184 26 N -0.103 5.103 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.020 0.980 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.175 0.825 38 H 0.194 0.806 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 15.324 -7.967 -18.488 25.300 hybrid contribution -0.230 -1.189 1.195 1.701 sum 15.094 -9.156 -17.293 24.712 Atomic orbital electron populations 1.23763 0.96071 1.01290 1.01017 1.23524 0.96618 0.99784 0.99768 1.21306 0.94671 0.94502 0.93499 1.62246 1.14012 1.43397 1.03904 1.20264 0.92708 0.97878 0.85814 1.20968 1.23481 0.98156 1.11392 0.90220 1.24862 0.95410 0.95530 0.97382 1.69891 1.28968 1.25887 1.29343 0.86931 0.77619 0.84086 0.81605 1.20220 1.21292 1.19081 1.20579 0.93151 0.94759 0.92377 1.22605 0.94865 0.95045 0.92910 1.21583 0.97962 1.08715 0.97589 1.22532 0.96773 0.99734 0.90617 1.45789 1.16714 1.44228 1.04338 1.17196 0.94797 0.97009 0.79631 1.20872 0.97662 1.04324 0.95238 1.20778 0.98272 0.96302 0.92641 1.21172 0.94209 1.02595 1.01371 1.17393 0.87137 0.95622 0.89103 1.91534 1.61714 1.79329 1.78589 1.20815 1.01496 1.03581 0.92532 1.77503 1.07082 1.23051 1.02621 0.89688 0.88178 0.88596 0.89402 0.91260 0.97988 0.95987 0.92743 0.93596 0.88990 0.82546 0.80644 0.84536 0.84019 0.84283 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 14.32 29.01 0.42 -2.89 16 2 C -0.18 -3.29 7.43 -36.02 -0.27 -3.56 16 3 C 0.09 1.77 5.48 -4.97 -0.03 1.74 16 4 N -0.51 -10.64 4.65 -238.97 -1.11 -11.75 16 5 C 0.16 3.78 3.68 -4.98 -0.02 3.76 16 6 C -0.50 -14.08 9.07 -34.44 -0.31 -14.39 16 7 H 0.08 2.47 7.89 -52.48 -0.41 2.05 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 10 Si 0.87 21.39 27.57 -169.99 -4.69 16.70 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.32 6.40 56.52 0.36 -5.96 16 14 C 0.12 2.07 5.36 -4.97 -0.03 2.05 16 15 C 0.11 1.82 5.98 -82.37 -0.49 1.33 16 16 C -0.23 -3.07 10.74 -39.99 -0.43 -3.50 16 17 C 0.04 0.50 10.80 -17.10 -0.18 0.31 16 18 N -0.34 -4.50 3.80 -10.71 -0.04 -4.54 16 19 C 0.21 2.39 6.69 -83.61 -0.56 1.84 16 20 C -0.16 -1.30 9.45 -39.40 -0.37 -1.68 16 21 C -0.06 -0.40 10.04 -39.62 -0.40 -0.80 16 22 C -0.17 -1.35 10.02 -39.48 -0.40 -1.75 16 23 C 0.13 1.33 7.30 -39.44 -0.29 1.04 16 24 F -0.13 -1.51 17.27 2.25 0.04 -1.47 16 25 C -0.16 -1.96 9.64 -39.33 -0.38 -2.34 16 26 N -0.28 -4.54 10.74 33.69 0.36 -4.18 16 27 H 0.08 1.35 8.06 -52.48 -0.42 0.93 16 28 H 0.10 1.88 7.84 -52.49 -0.41 1.47 16 29 H 0.10 1.69 6.78 -52.49 -0.36 1.33 16 30 H 0.09 1.96 7.01 -51.93 -0.36 1.60 16 31 H 0.07 1.35 6.33 -51.93 -0.33 1.02 16 32 H 0.00 0.06 5.44 -51.93 -0.28 -0.22 16 33 H 0.02 0.52 7.49 -51.93 -0.39 0.13 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.05 0.77 6.32 -51.93 -0.33 0.45 16 36 H 0.09 1.43 7.86 -51.93 -0.41 1.03 16 37 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.18 1.23 7.04 -52.48 -0.37 0.86 16 39 H 0.14 0.78 6.74 -52.49 -0.35 0.43 16 40 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.15 2.00 7.70 -52.48 -0.40 1.60 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -32.39 355.04 -8.42 -40.81 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.28 Total: 2.80 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -3.83 Total: -16.94 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.02 Total: -47.25 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.69 Total: 16.70 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.39 -8.42 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590002654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.764 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds