Wall clock time and date at job start Tue Mar 31 2020 10:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35387 * 126.97575 * 2 1 4 4 N 1.33768 * 106.53187 * 179.85516 * 3 2 1 5 5 N 1.28601 * 109.05863 * 0.42063 * 4 3 2 6 6 N 1.28727 * 110.24009 * 359.73472 * 5 4 3 7 7 C 1.40328 * 125.94071 * 179.97438 * 6 5 4 8 8 C 1.38836 * 119.99230 * 144.75235 * 7 6 5 9 9 C 1.38035 * 120.00279 * 179.76612 * 8 7 6 10 10 C 1.38885 * 119.99049 * 0.48433 * 9 8 7 11 11 N 1.40020 * 119.99936 * 179.74250 * 10 9 8 12 12 C 1.34781 * 120.00119 * 33.33913 * 11 10 9 13 13 O 1.21590 * 119.99773 * 5.29287 * 12 11 10 14 14 N 1.34771 * 120.00049 * 185.29253 * 12 11 10 15 15 C 1.46502 * 119.99858 * 0.02562 * 14 12 11 16 16 C 1.46502 * 120.00238 * 179.97438 * 14 12 11 17 17 C 1.50702 * 109.46547 * 89.99967 * 16 14 12 18 18 H 1.08001 * 120.00424 * 0.02562 * 17 16 14 19 19 C 1.37885 * 119.99614 * 180.02562 * 17 16 14 20 20 N 1.31512 * 119.99645 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47329 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46755 * 120.00140 * 21 19 17 24 24 H 1.48503 * 109.46813 * 239.99811 * 21 19 17 25 25 C 1.38875 * 119.99377 * 359.77002 * 10 9 8 26 26 C 1.38030 * 119.99653 * 359.97438 * 25 10 9 27 27 H 1.09009 * 109.46664 * 269.68556 * 1 2 3 28 28 H 1.08993 * 109.47264 * 149.68775 * 1 2 3 29 29 H 1.08998 * 109.47192 * 29.67790 * 1 2 3 30 30 H 1.07999 * 126.73346 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.99886 * 359.97438 * 8 7 6 32 32 H 1.07992 * 120.00160 * 180.24686 * 9 8 7 33 33 H 0.97002 * 119.99962 * 213.33405 * 11 10 9 34 34 H 1.08997 * 109.47331 * 89.99960 * 15 14 12 35 35 H 1.09005 * 109.46927 * 209.99814 * 15 14 12 36 36 H 1.09001 * 109.47252 * 329.99352 * 15 14 12 37 37 H 1.08995 * 109.47367 * 210.00307 * 16 14 12 38 38 H 1.09000 * 109.46623 * 330.00473 * 16 14 12 39 39 H 0.97004 * 119.99739 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.00562 * 179.97438 * 25 10 9 41 41 H 1.07994 * 119.99815 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3213 1.0816 0.0000 4 7 3.5747 0.6144 0.0032 5 7 3.5437 -0.6713 -0.0038 6 7 2.3255 -1.0873 -0.0060 7 6 1.9132 -2.4286 -0.0138 8 6 0.7708 -2.8076 0.6781 9 6 0.3624 -4.1261 0.6666 10 6 1.1000 -5.0753 -0.0290 11 7 0.6889 -6.4138 -0.0364 12 6 -0.6243 -6.7156 -0.0037 13 8 -1.4536 -5.8285 -0.0649 14 7 -1.0181 -8.0005 0.0970 15 6 -0.0188 -9.0692 0.1714 16 6 -2.4454 -8.3286 0.1331 17 6 -2.9459 -8.5486 -1.2713 18 1 -2.2684 -8.4540 -2.1071 19 6 -4.2687 -8.8707 -1.4892 20 7 -5.0937 -8.9855 -0.4715 21 14 -4.8889 -9.1441 -3.2299 22 1 -3.7705 -8.9578 -4.1889 23 1 -5.4222 -10.5245 -3.3542 24 1 -5.9670 -8.1680 -3.5302 25 6 2.2457 -4.6969 -0.7167 26 6 2.6508 -3.3774 -0.7093 27 1 -0.3633 -0.0056 1.0278 28 1 -0.3633 -0.8871 -0.5186 29 1 -0.3633 0.8928 -0.5088 30 1 2.0184 2.1182 -0.0004 31 1 0.1997 -2.0702 1.2226 32 1 -0.5285 -4.4201 1.2015 33 1 1.3491 -7.1238 -0.0651 34 1 0.2363 -9.2562 1.2144 35 1 -0.4253 -9.9783 -0.2719 36 1 0.8762 -8.7684 -0.3732 37 1 -2.5951 -9.2358 0.7185 38 1 -2.9957 -7.5063 0.5903 39 1 -6.0243 -9.2125 -0.6247 40 1 2.8196 -5.4349 -1.2573 41 1 3.5419 -3.0831 -1.2437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592273733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:49 Heat of formation + Delta-G solvation = 115.004268 kcal Electronic energy + Delta-G solvation = -25219.754761 eV Core-core repulsion = 21523.885886 eV Total energy + Delta-G solvation = -3695.868875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.55453 -40.52132 -38.85381 -35.70006 -34.91760 -33.64841 -33.17876 -32.54906 -31.17223 -29.16046 -27.83798 -27.59952 -25.97847 -24.24157 -23.51914 -22.72113 -22.01224 -20.89760 -19.62950 -18.31651 -18.11957 -17.10405 -16.72189 -16.61221 -15.42343 -15.17805 -15.08525 -14.61932 -14.38975 -14.36789 -14.06976 -13.79815 -13.44626 -13.38676 -13.31886 -13.05740 -12.70454 -12.48906 -12.27548 -12.02507 -11.89922 -11.66974 -11.30432 -11.19642 -10.98158 -10.81825 -10.68812 -10.25187 -10.04534 -9.71344 -9.56545 -9.30978 -9.19277 -8.52349 -8.15938 -7.76424 -6.13309 -4.18306 0.57487 1.12009 1.68491 2.14220 2.38296 2.93286 3.24051 3.31308 3.32965 3.36810 3.77852 4.16800 4.24316 4.39119 4.43995 4.62410 4.65071 4.77258 4.99391 5.04234 5.15747 5.20089 5.21509 5.32989 5.40621 5.54538 5.57838 5.68901 5.71673 5.79784 5.94002 5.98223 6.09738 6.15071 6.31475 6.61184 6.61994 6.91290 7.19671 7.33370 7.49130 7.83503 8.11889 8.32248 8.36356 8.81291 9.02058 9.47325 10.94687 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002749 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.912552 B =10181.480957 C =10853.944931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.014 4.014 3 C -0.053 4.053 4 N -0.270 5.270 5 N -0.085 5.085 6 N -0.232 5.232 7 C 0.076 3.924 8 C -0.086 4.086 9 C -0.107 4.107 10 C 0.206 3.794 11 N -0.695 5.695 12 C 0.696 3.304 13 O -0.565 6.565 14 N -0.608 5.608 15 C 0.082 3.918 16 C 0.258 3.742 17 C -0.529 4.529 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.282 1.282 25 C -0.143 4.143 26 C -0.069 4.069 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.191 0.809 31 H 0.137 0.863 32 H 0.154 0.846 33 H 0.405 0.595 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.138 0.862 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.679 10.441 2.758 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C -0.209 4.209 4 N -0.135 5.135 5 N -0.063 5.063 6 N -0.020 5.020 7 C -0.015 4.015 8 C -0.107 4.107 9 C -0.128 4.128 10 C 0.107 3.893 11 N -0.344 5.344 12 C 0.398 3.602 13 O -0.441 6.441 14 N -0.343 5.343 15 C -0.062 4.062 16 C 0.139 3.861 17 C -0.568 4.568 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.165 4.165 26 C -0.089 4.089 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.208 0.792 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.243 0.757 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.156 0.844 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.295 10.530 2.783 17.972 hybrid contribution -1.168 -0.386 -1.071 1.631 sum 13.127 10.144 1.712 16.678 Atomic orbital electron populations 1.20513 0.85676 1.04805 1.03729 1.22516 0.96747 0.86353 1.08759 1.23345 0.88850 1.00098 1.08649 1.75044 1.21403 1.00730 1.16346 1.78372 1.00888 1.06813 1.20212 1.44624 1.05251 1.05933 1.46237 1.17479 0.98901 0.79511 1.05634 1.20925 0.94769 0.96906 0.98095 1.21178 1.01260 0.91144 0.99252 1.17727 0.93706 0.84373 0.93474 1.43148 1.07866 1.05649 1.77774 1.15926 0.81192 0.84429 0.78662 1.90915 1.50707 1.46052 1.56409 1.47552 1.09910 1.02712 1.74151 1.21633 0.91446 0.92781 1.00374 1.19306 0.72193 0.96998 0.97571 1.21464 0.94901 1.47724 0.92671 0.92427 1.24929 0.96528 0.95216 0.97374 1.69933 1.04945 1.48226 1.30167 0.86435 0.78890 0.77713 0.84335 1.19838 1.20916 1.20805 1.20758 0.98638 0.95858 1.01267 1.20674 0.99256 0.91535 0.97475 0.89787 0.90062 0.89166 0.79168 0.84574 0.82868 0.75707 0.93365 0.90081 0.93125 0.94565 0.93556 0.92664 0.84406 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 8.66 36.01 0.31 -0.36 16 2 C -0.01 -0.15 6.83 -81.72 -0.56 -0.71 16 3 C -0.05 -0.57 11.99 -17.73 -0.21 -0.79 16 4 N -0.27 -3.80 12.39 30.24 0.37 -3.43 16 5 N -0.09 -1.24 12.84 60.35 0.77 -0.46 16 6 N -0.23 -2.99 3.51 -6.75 -0.02 -3.01 16 7 C 0.08 0.94 6.27 -83.52 -0.52 0.41 16 8 C -0.09 -1.02 8.33 -39.43 -0.33 -1.35 16 9 C -0.11 -1.48 8.65 -39.42 -0.34 -1.82 16 10 C 0.21 2.74 6.28 -83.64 -0.53 2.21 16 11 N -0.70 -9.75 5.22 -14.20 -0.07 -9.83 16 12 C 0.70 13.39 8.02 -86.92 -0.70 12.70 16 13 O -0.56 -13.09 13.61 5.29 0.07 -13.02 16 14 N -0.61 -11.88 2.86 -188.74 -0.54 -12.42 16 15 C 0.08 1.13 10.25 59.85 0.61 1.75 16 16 C 0.26 6.36 5.16 -5.19 -0.03 6.34 16 17 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 18 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 21 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.14 -1.57 9.95 -39.42 -0.39 -1.96 16 26 C -0.07 -0.78 9.70 -39.43 -0.38 -1.17 16 27 H 0.08 0.52 7.80 -51.92 -0.40 0.12 16 28 H 0.08 0.70 7.00 -51.93 -0.36 0.34 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 1.36 6.18 -52.49 -0.32 1.03 16 32 H 0.15 2.39 6.41 -52.49 -0.34 2.06 16 33 H 0.41 4.31 6.51 -40.82 -0.27 4.04 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 36 H 0.05 0.53 6.29 -51.93 -0.33 0.21 16 37 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.14 1.43 8.03 -52.49 -0.42 1.01 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -34.26 349.81 -6.81 -41.08 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.90 Total: 2.34 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -3.48 Total: 2.18 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 1.25 Total: -54.07 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.26 -6.81 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592273733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.082 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds