Wall clock time and date at job start Tue Mar 31 2020 10:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35387 * 126.97575 * 2 1 4 4 N 1.33768 * 106.53187 * 179.85516 * 3 2 1 5 5 N 1.28601 * 109.05863 * 0.42063 * 4 3 2 6 6 N 1.28727 * 110.24009 * 359.73472 * 5 4 3 7 7 C 1.40328 * 125.94071 * 179.97438 * 6 5 4 8 8 C 1.38836 * 119.99230 * 144.75235 * 7 6 5 9 9 C 1.38035 * 120.00279 * 179.76612 * 8 7 6 10 10 C 1.38885 * 119.99049 * 0.48433 * 9 8 7 11 11 N 1.40020 * 119.99936 * 179.74250 * 10 9 8 12 12 C 1.34781 * 120.00119 * 33.33913 * 11 10 9 13 13 O 1.21590 * 119.99773 * 5.29287 * 12 11 10 14 14 N 1.34771 * 120.00049 * 185.29253 * 12 11 10 15 15 C 1.46502 * 119.99858 * 0.02562 * 14 12 11 16 16 C 1.46502 * 120.00238 * 179.97438 * 14 12 11 17 17 C 1.50702 * 109.46547 * 89.99967 * 16 14 12 18 18 H 1.08001 * 120.00424 * 0.02562 * 17 16 14 19 19 C 1.37885 * 119.99614 * 180.02562 * 17 16 14 20 20 N 1.31512 * 119.99645 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47329 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46755 * 120.00140 * 21 19 17 24 24 H 1.48503 * 109.46813 * 239.99811 * 21 19 17 25 25 C 1.38875 * 119.99377 * 359.77002 * 10 9 8 26 26 C 1.38030 * 119.99653 * 359.97438 * 25 10 9 27 27 H 1.09009 * 109.46664 * 269.68556 * 1 2 3 28 28 H 1.08993 * 109.47264 * 149.68775 * 1 2 3 29 29 H 1.08998 * 109.47192 * 29.67790 * 1 2 3 30 30 H 1.07999 * 126.73346 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.99886 * 359.97438 * 8 7 6 32 32 H 1.07992 * 120.00160 * 180.24686 * 9 8 7 33 33 H 0.97002 * 119.99962 * 213.33405 * 11 10 9 34 34 H 1.08997 * 109.47331 * 89.99960 * 15 14 12 35 35 H 1.09005 * 109.46927 * 209.99814 * 15 14 12 36 36 H 1.09001 * 109.47252 * 329.99352 * 15 14 12 37 37 H 1.08995 * 109.47367 * 210.00307 * 16 14 12 38 38 H 1.09000 * 109.46623 * 330.00473 * 16 14 12 39 39 H 0.97004 * 119.99739 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.00562 * 179.97438 * 25 10 9 41 41 H 1.07994 * 119.99815 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3213 1.0816 0.0000 4 7 3.5747 0.6144 0.0032 5 7 3.5437 -0.6713 -0.0038 6 7 2.3255 -1.0873 -0.0060 7 6 1.9132 -2.4286 -0.0138 8 6 0.7708 -2.8076 0.6781 9 6 0.3624 -4.1261 0.6666 10 6 1.1000 -5.0753 -0.0290 11 7 0.6889 -6.4138 -0.0364 12 6 -0.6243 -6.7156 -0.0037 13 8 -1.4536 -5.8285 -0.0649 14 7 -1.0181 -8.0005 0.0970 15 6 -0.0188 -9.0692 0.1714 16 6 -2.4454 -8.3286 0.1331 17 6 -2.9459 -8.5486 -1.2713 18 1 -2.2684 -8.4540 -2.1071 19 6 -4.2687 -8.8707 -1.4892 20 7 -5.0937 -8.9855 -0.4715 21 14 -4.8889 -9.1441 -3.2299 22 1 -3.7705 -8.9578 -4.1889 23 1 -5.4222 -10.5245 -3.3542 24 1 -5.9670 -8.1680 -3.5302 25 6 2.2457 -4.6969 -0.7167 26 6 2.6508 -3.3774 -0.7093 27 1 -0.3633 -0.0056 1.0278 28 1 -0.3633 -0.8871 -0.5186 29 1 -0.3633 0.8928 -0.5088 30 1 2.0184 2.1182 -0.0004 31 1 0.1997 -2.0702 1.2226 32 1 -0.5285 -4.4201 1.2015 33 1 1.3491 -7.1238 -0.0651 34 1 0.2363 -9.2562 1.2144 35 1 -0.4253 -9.9783 -0.2719 36 1 0.8762 -8.7684 -0.3732 37 1 -2.5951 -9.2358 0.7185 38 1 -2.9957 -7.5063 0.5903 39 1 -6.0243 -9.2125 -0.6247 40 1 2.8196 -5.4349 -1.2573 41 1 3.5419 -3.0831 -1.2437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592273733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:48 Heat of formation + Delta-G solvation = 92.631339 kcal Electronic energy + Delta-G solvation = -25220.724924 eV Core-core repulsion = 21523.885886 eV Total energy + Delta-G solvation = -3696.839038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.47186 -41.77793 -40.02853 -36.99013 -36.37986 -34.97791 -34.33979 -33.97509 -32.11698 -30.43484 -29.34194 -28.43959 -27.37903 -25.58455 -24.64078 -24.08481 -23.00900 -21.87170 -20.97937 -19.42191 -19.19059 -18.67055 -18.39669 -17.65840 -16.88836 -16.65517 -16.13736 -15.94191 -15.67840 -15.23610 -15.08630 -14.86832 -14.77928 -14.41979 -14.23882 -14.06765 -13.96136 -13.77613 -13.49579 -13.31715 -13.11194 -12.84694 -12.81765 -12.61541 -12.53824 -12.20274 -12.13726 -11.80998 -11.67675 -11.20125 -11.04226 -10.63606 -10.18877 -10.14215 -9.56933 -9.05603 -8.21519 -6.35688 -0.39670 0.18089 0.74741 1.24170 1.37633 1.39855 1.48810 1.50600 1.64667 2.07033 2.38954 2.61018 2.99123 3.09084 3.36484 3.57971 3.72108 3.82459 3.99165 4.06853 4.14274 4.26710 4.35322 4.51156 4.62989 4.64437 4.65818 4.79252 4.85892 4.89162 4.97577 4.98271 5.12388 5.16484 5.22129 5.28911 5.29575 5.53937 5.61049 5.76290 5.89415 6.02807 6.06224 6.73243 6.98878 7.31080 7.38387 7.56703 8.85166 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002749 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.912552 B =10181.480957 C =10853.944931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.013 4.013 3 C -0.053 4.053 4 N -0.297 5.297 5 N -0.117 5.117 6 N -0.239 5.239 7 C 0.072 3.928 8 C -0.080 4.080 9 C -0.122 4.122 10 C 0.184 3.816 11 N -0.674 5.674 12 C 0.694 3.306 13 O -0.614 6.614 14 N -0.618 5.618 15 C 0.076 3.924 16 C 0.274 3.726 17 C -0.540 4.540 18 H 0.052 0.948 19 C 0.010 3.990 20 N -0.927 5.927 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.270 1.270 24 H -0.283 1.283 25 C -0.123 4.123 26 C -0.070 4.070 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.226 0.774 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.424 0.576 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.030 0.970 38 H 0.004 0.996 39 H 0.267 0.733 40 H 0.171 0.829 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.005 10.775 1.571 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C -0.210 4.210 4 N -0.161 5.161 5 N -0.094 5.094 6 N -0.028 5.028 7 C -0.020 4.020 8 C -0.101 4.101 9 C -0.143 4.143 10 C 0.087 3.913 11 N -0.325 5.325 12 C 0.395 3.605 13 O -0.493 6.493 14 N -0.352 5.352 15 C -0.067 4.067 16 C 0.153 3.847 17 C -0.579 4.579 18 H 0.070 0.930 19 C -0.190 4.190 20 N -0.567 5.567 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.196 1.196 24 H -0.209 1.209 25 C -0.144 4.144 26 C -0.091 4.091 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.134 0.866 30 H 0.243 0.757 31 H 0.169 0.831 32 H 0.146 0.854 33 H 0.265 0.735 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.022 0.978 39 H 0.076 0.924 40 H 0.189 0.811 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.720 10.842 1.602 19.164 hybrid contribution -1.538 -0.377 -0.650 1.712 sum 14.182 10.465 0.952 17.651 Atomic orbital electron populations 1.20667 0.83476 1.05539 1.04965 1.23123 0.98061 0.85768 1.07391 1.23989 0.87704 1.01761 1.07511 1.74997 1.23189 1.00850 1.17091 1.78332 1.01753 1.07205 1.22087 1.44750 1.05349 1.06384 1.46322 1.17664 0.98938 0.79812 1.05547 1.20945 0.94810 0.96417 0.97932 1.21053 1.00912 0.92296 1.00074 1.17920 0.94843 0.83789 0.94777 1.42716 1.06099 1.06703 1.76970 1.16060 0.82461 0.83709 0.78228 1.90880 1.52615 1.47417 1.58408 1.47386 1.09012 1.04357 1.74424 1.21938 0.91173 0.90880 1.02674 1.18741 0.75115 0.94857 0.96025 1.21731 0.95219 1.47458 0.93503 0.92965 1.25795 0.96808 0.94956 1.01406 1.70042 1.05335 1.49040 1.32278 0.85412 0.78182 0.78020 0.79449 1.19273 1.19555 1.20868 1.20982 0.97328 0.96279 0.99855 1.20901 0.99448 0.91536 0.97188 0.88187 0.91169 0.86576 0.75718 0.83121 0.85362 0.73531 0.90876 0.90803 0.89274 0.95169 0.97801 0.92399 0.81123 0.83238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 8.66 71.24 0.62 -0.54 16 2 C -0.01 -0.26 6.83 41.24 0.28 0.02 16 3 C -0.05 -1.05 11.99 83.74 1.00 -0.05 16 4 N -0.30 -8.09 12.39 -58.24 -0.72 -8.81 16 5 N -0.12 -3.31 12.84 37.02 0.48 -2.84 16 6 N -0.24 -5.90 3.51 -175.26 -0.61 -6.52 16 7 C 0.07 1.68 6.27 38.07 0.24 1.92 16 8 C -0.08 -1.87 8.33 22.36 0.19 -1.69 16 9 C -0.12 -3.40 8.65 22.38 0.19 -3.21 16 10 C 0.18 4.70 6.28 38.14 0.24 4.94 16 11 N -0.67 -18.03 5.22 -317.09 -1.66 -19.69 16 12 C 0.69 26.90 8.02 179.05 1.44 28.33 16 13 O -0.61 -29.59 13.61 -4.00 -0.05 -29.64 16 14 N -0.62 -24.20 2.86 -869.30 -2.48 -26.68 16 15 C 0.08 1.95 10.25 127.77 1.31 3.26 16 16 C 0.27 13.98 5.16 85.63 0.44 14.42 16 17 C -0.54 -29.86 9.39 25.60 0.24 -29.62 16 18 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 19 C 0.01 0.53 5.46 84.66 0.46 0.99 16 20 N -0.93 -54.30 13.29 21.45 0.28 -54.01 16 21 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 C -0.12 -2.39 9.95 22.37 0.22 -2.17 16 26 C -0.07 -1.47 9.70 22.37 0.22 -1.25 16 27 H 0.10 1.01 7.80 -2.38 -0.02 1.00 16 28 H 0.07 1.12 7.00 -2.39 -0.02 1.10 16 29 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.23 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.15 2.93 6.18 -2.91 -0.02 2.91 16 32 H 0.13 4.26 6.41 -2.91 -0.02 4.24 16 33 H 0.42 7.81 6.51 -92.71 -0.60 7.20 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 2.04 8.07 -2.38 -0.02 2.02 16 36 H 0.09 1.59 6.29 -2.39 -0.02 1.57 16 37 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 38 H 0.00 0.23 7.42 -2.39 -0.02 0.21 16 39 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.15 2.80 8.03 -2.91 -0.02 2.77 16 Total: -1.00 -77.66 349.81 4.82 -72.84 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.47 Total: 14.30 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 7.09 Total: 15.37 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -4.71 Total: -118.54 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.66 4.82 -72.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592273733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.475 kcal (2) G-P(sol) polarization free energy of solvation -77.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds