Wall clock time and date at job start Tue Mar 31 2020 10:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30713 * 126.36455 * 2 1 4 4 N 1.28422 * 110.65279 * 179.97438 * 3 2 1 5 5 N 1.28947 * 110.21803 * 0.02562 * 4 3 2 6 6 N 1.35127 * 126.36839 * 179.97438 * 2 1 3 7 7 C 1.39978 * 127.39201 * 0.02562 * 6 2 1 8 8 C 1.39015 * 119.92245 * 324.72882 * 7 6 2 9 9 C 1.37744 * 120.08117 * 179.76748 * 8 7 6 10 10 C 1.39693 * 119.91830 * 0.48000 * 9 8 7 11 11 C 1.47697 * 120.08101 * 179.79039 * 10 9 8 12 12 O 1.21575 * 119.99751 * 320.84366 * 11 10 9 13 13 N 1.34779 * 119.99870 * 140.84512 * 11 10 9 14 14 C 1.46494 * 120.00213 * 4.90050 * 13 11 10 15 15 C 1.46507 * 119.99690 * 184.89832 * 13 11 10 16 16 H 1.09004 * 109.47022 * 359.97438 * 15 13 11 17 17 C 1.53001 * 109.47039 * 240.00130 * 15 13 11 18 18 C 1.50701 * 109.46742 * 119.99940 * 15 13 11 19 19 H 1.08000 * 119.99992 * 34.08217 * 18 15 13 20 20 C 1.37874 * 119.99588 * 214.07493 * 18 15 13 21 21 N 1.31516 * 120.00049 * 183.28291 * 20 18 15 22 22 Si 1.86803 * 120.00244 * 3.28966 * 20 18 15 23 23 H 1.48496 * 109.47358 * 92.94128 * 22 20 18 24 24 H 1.48503 * 109.46694 * 212.94381 * 22 20 18 25 25 H 1.48497 * 109.46993 * 332.94114 * 22 20 18 26 26 C 1.39690 * 119.84040 * 359.77247 * 10 9 8 27 27 C 1.37752 * 119.91959 * 359.97438 * 26 10 9 28 28 H 1.08994 * 109.47416 * 270.02494 * 1 2 3 29 29 H 1.09006 * 109.47007 * 30.02549 * 1 2 3 30 30 H 1.09004 * 109.47033 * 150.02293 * 1 2 3 31 31 H 1.08002 * 119.95881 * 0.02562 * 8 7 6 32 32 H 1.08002 * 120.04329 * 180.23092 * 9 8 7 33 33 H 1.08995 * 109.47164 * 85.16453 * 14 13 11 34 34 H 1.08999 * 109.47055 * 205.17153 * 14 13 11 35 35 H 1.09003 * 109.46630 * 325.16679 * 14 13 11 36 36 H 1.09003 * 109.46675 * 294.85889 * 17 15 13 37 37 H 1.08994 * 109.46913 * 54.85646 * 17 15 13 38 38 H 1.08995 * 109.46736 * 174.86058 * 17 15 13 39 39 H 0.96997 * 120.00348 * 179.97438 * 21 20 18 40 40 H 1.07997 * 120.03971 * 180.02562 * 26 10 9 41 41 H 1.07992 * 119.95906 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0526 0.0000 4 7 3.5183 0.7048 0.0005 5 7 3.6196 -0.5807 0.0004 6 7 2.3083 -1.0881 0.0005 7 6 1.9168 -2.4320 0.0006 8 6 0.7782 -2.8226 0.6960 9 6 0.3874 -4.1434 0.6943 10 6 1.1423 -5.0925 0.0010 11 6 0.7290 -6.5105 0.0007 12 8 0.2827 -7.0138 1.0134 13 7 0.8467 -7.2464 -1.1223 14 6 1.4828 -6.6728 -2.3107 15 6 0.3384 -8.6201 -1.1544 16 1 -0.0966 -8.8693 -0.1865 17 6 1.4883 -9.5824 -1.4589 18 6 -0.7149 -8.7410 -2.2253 19 1 -0.6292 -8.1645 -3.1345 20 6 -1.7878 -9.5878 -2.0444 21 7 -2.6728 -9.7424 -3.0049 22 14 -1.9847 -10.5154 -0.4350 23 1 -2.8462 -9.7314 0.4861 24 1 -2.6132 -11.8349 -0.6979 25 1 -0.6511 -10.7173 0.1863 26 6 2.2887 -4.6973 -0.6923 27 6 2.6707 -3.3737 -0.6905 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 0.1971 -2.0888 1.2348 32 1 -0.4994 -4.4455 1.2317 33 1 2.5631 -6.8004 -2.2419 34 1 1.1130 -7.1804 -3.2015 35 1 1.2456 -5.6107 -2.3728 36 1 1.8641 -9.3926 -2.4644 37 1 2.2903 -9.4303 -0.7366 38 1 1.1297 -10.6095 -1.3929 39 1 -3.4274 -10.3384 -2.8779 40 1 2.8745 -5.4283 -1.2297 41 1 3.5571 -3.0675 -1.2259 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593454092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:53 Heat of formation + Delta-G solvation = 125.939482 kcal Electronic energy + Delta-G solvation = -25642.954741 eV Core-core repulsion = 21947.560052 eV Total energy + Delta-G solvation = -3695.394688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.51642 -40.41035 -38.68673 -35.70711 -35.48286 -33.68268 -32.92934 -31.58359 -31.09726 -29.79114 -29.10689 -26.62772 -25.49124 -25.21627 -23.65927 -22.79106 -21.79645 -21.16426 -19.07608 -18.70828 -17.58916 -17.09218 -16.61089 -16.10433 -15.56380 -15.45443 -14.97322 -14.63755 -14.41735 -14.17853 -13.91594 -13.78613 -13.66654 -13.19735 -13.16332 -12.76237 -12.64666 -12.58144 -12.40038 -12.38787 -11.99652 -11.80792 -11.46128 -11.33449 -11.20288 -11.05313 -10.83153 -10.58809 -10.50276 -9.86182 -9.52331 -9.42748 -9.33699 -8.99027 -8.72750 -7.89580 -6.28129 -4.31709 -0.01220 0.90121 1.01981 1.43153 1.92370 2.83010 3.20163 3.30283 3.35977 3.38362 3.51463 3.67344 3.96497 4.27523 4.30049 4.38025 4.57358 4.65541 4.80370 4.86320 4.96884 4.98953 5.08699 5.11094 5.14053 5.32732 5.50740 5.54305 5.65175 5.71169 5.82637 6.01485 6.03728 6.13513 6.20628 6.28256 6.41442 6.46231 6.79462 6.93604 7.28880 7.47814 7.91851 8.09748 8.32698 8.62576 8.73198 9.33289 10.83428 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026020 B = 0.002983 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.824555 B = 9383.412700 C = 9661.532063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.253 3.747 3 N -0.333 5.333 4 N -0.037 5.037 5 N -0.078 5.078 6 N -0.327 5.327 7 C 0.129 3.871 8 C -0.121 4.121 9 C -0.049 4.049 10 C -0.095 4.095 11 C 0.543 3.457 12 O -0.545 6.545 13 N -0.576 5.576 14 C 0.073 3.927 15 C 0.221 3.779 16 H 0.068 0.932 17 C -0.147 4.147 18 C -0.529 4.529 19 H 0.079 0.921 20 C 0.081 3.919 21 N -0.889 5.889 22 Si 0.873 3.127 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.260 1.260 26 C -0.078 4.078 27 C -0.101 4.101 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.056 0.944 39 H 0.267 0.733 40 H 0.153 0.847 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.742 14.589 4.042 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.023 4.023 3 N -0.184 5.184 4 N -0.032 5.032 5 N -0.062 5.062 6 N -0.118 5.118 7 C 0.037 3.963 8 C -0.141 4.141 9 C -0.068 4.068 10 C -0.099 4.099 11 C 0.329 3.671 12 O -0.425 6.425 13 N -0.306 5.306 14 C -0.070 4.070 15 C 0.121 3.879 16 H 0.086 0.914 17 C -0.206 4.206 18 C -0.567 4.567 19 H 0.097 0.903 20 C -0.124 4.124 21 N -0.525 5.525 22 Si 0.699 3.301 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.184 1.184 26 C -0.097 4.097 27 C -0.121 4.121 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.170 0.830 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.618 14.906 4.472 17.327 hybrid contribution -0.798 -1.067 0.619 1.469 sum 6.820 13.840 5.091 16.247 Atomic orbital electron populations 1.20722 0.81965 1.06401 1.05485 1.25922 0.98338 0.82258 0.95738 1.74466 0.96318 1.24749 1.22865 1.78035 1.11430 1.04057 1.09659 1.82710 0.96979 1.04861 1.21686 1.48873 1.05841 1.06635 1.50424 1.17629 0.97676 0.79031 1.01946 1.20973 0.96207 0.97257 0.99710 1.21128 0.99391 0.90459 0.95827 1.20466 0.96185 0.95180 0.98079 1.18171 0.79527 0.85151 0.84231 1.90763 1.46896 1.72402 1.32415 1.48317 1.56235 1.15512 1.10507 1.22008 0.96017 0.98716 0.90286 1.19449 0.92636 0.76333 0.99485 0.91446 1.22225 0.98071 1.00337 0.99955 1.21096 1.05807 1.26549 1.03217 0.90271 1.24949 0.94937 0.96004 0.96473 1.69880 1.13037 1.37116 1.32494 0.86907 0.79388 0.79521 0.84255 1.19813 1.21128 1.18413 1.21708 0.95817 0.95485 0.96678 1.20931 1.00037 0.92196 0.98956 0.87840 0.87352 0.88489 0.84229 0.83359 0.93339 0.89482 0.91920 0.93059 0.95384 0.92464 0.92259 0.83000 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 8.74 36.01 0.31 -0.12 16 2 C 0.25 2.50 7.97 -155.16 -1.24 1.26 16 3 N -0.33 -4.15 12.15 32.76 0.40 -3.76 16 4 N -0.04 -0.52 13.39 60.35 0.81 0.29 16 5 N -0.08 -1.04 13.74 60.35 0.83 -0.21 16 6 N -0.33 -3.64 3.77 -7.93 -0.03 -3.67 16 7 C 0.13 1.33 6.35 -83.56 -0.53 0.80 16 8 C -0.12 -1.11 8.39 -39.47 -0.33 -1.44 16 9 C -0.05 -0.56 9.62 -39.22 -0.38 -0.94 16 10 C -0.10 -1.30 5.24 -104.95 -0.55 -1.85 16 11 C 0.54 10.02 7.35 -12.40 -0.09 9.93 16 12 O -0.55 -12.09 16.25 5.30 0.09 -12.01 16 13 N -0.58 -10.84 2.75 -176.43 -0.49 -11.33 16 14 C 0.07 1.05 7.98 59.84 0.48 1.53 16 15 C 0.22 4.94 2.21 -69.08 -0.15 4.79 16 16 H 0.07 1.67 4.01 -51.93 -0.21 1.46 16 17 C -0.15 -2.88 9.09 37.16 0.34 -2.54 16 18 C -0.53 -13.60 8.70 -34.44 -0.30 -13.90 16 19 H 0.08 2.15 6.90 -52.49 -0.36 1.79 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 21 N -0.89 -25.52 13.96 55.43 0.77 -24.74 16 22 Si 0.87 20.95 26.99 -169.99 -4.59 16.36 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.26 -6.03 6.47 56.52 0.37 -5.66 16 26 C -0.08 -0.85 7.56 -39.22 -0.30 -1.15 16 27 C -0.10 -1.02 9.79 -39.47 -0.39 -1.41 16 28 H 0.10 0.32 7.83 -51.93 -0.41 -0.09 16 29 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.42 7.04 -51.93 -0.37 0.05 16 31 H 0.14 0.88 6.27 -52.49 -0.33 0.55 16 32 H 0.15 1.67 8.05 -52.49 -0.42 1.25 16 33 H 0.05 0.56 6.86 -51.93 -0.36 0.20 16 34 H 0.09 1.38 6.62 -51.93 -0.34 1.04 16 35 H 0.06 0.77 5.84 -51.93 -0.30 0.47 16 36 H 0.05 0.93 7.84 -51.93 -0.41 0.52 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 1.14 7.88 -51.93 -0.41 0.73 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.15 1.46 5.27 -52.49 -0.28 1.18 16 41 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -33.23 341.20 -4.92 -38.14 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.63 Total: -1.28 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -3.22 Total: -2.95 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 2.29 Total: -43.41 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.59 Total: 16.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.23 -4.92 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593454092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.084 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds