Wall clock time and date at job start Tue Mar 31 2020 10:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30892 * 125.87736 * 2 1 4 4 N 1.40089 * 108.21421 * 179.78792 * 3 2 1 5 5 C 1.40257 * 126.04884 * 180.24468 * 4 3 2 6 6 C 1.38797 * 120.06981 * 179.89100 * 5 4 3 7 7 C 1.38132 * 119.95104 * 179.74963 * 6 5 4 8 8 C 1.38292 * 120.11358 * 0.55017 * 7 6 5 9 9 C 1.38240 * 120.15695 * 359.70423 * 8 7 6 10 10 C 1.38343 * 120.03795 * 0.02562 * 9 8 7 11 11 F 1.35097 * 120.05839 * 179.97438 * 10 9 8 12 12 C 1.35204 * 107.89271 * 0.38977 * 4 3 2 13 13 C 1.35330 * 107.71805 * 359.61862 * 12 4 3 14 14 C 1.50703 * 126.03499 * 180.26306 * 13 12 4 15 15 N 1.46497 * 109.47003 * 259.97688 * 14 13 12 16 16 C 1.36934 * 120.00094 * 90.00088 * 15 14 13 17 17 H 1.07997 * 119.99961 * 217.30182 * 16 15 14 18 18 C 1.38815 * 120.00130 * 37.30114 * 16 15 14 19 19 N 1.31615 * 119.99806 * 20.76612 * 18 16 15 20 20 Si 1.86795 * 120.00047 * 200.76580 * 18 16 15 21 21 H 1.48501 * 109.47180 * 89.99753 * 20 18 16 22 22 H 1.48493 * 109.47245 * 209.99900 * 20 18 16 23 23 H 1.48501 * 109.47044 * 329.99980 * 20 18 16 24 24 C 1.46501 * 119.99794 * 269.99864 * 15 14 13 25 25 C 1.52996 * 117.50001 * 187.27460 * 24 15 14 26 26 C 1.52995 * 117.49880 * 118.61088 * 24 15 14 27 27 H 1.09002 * 109.47485 * 269.97125 * 1 2 3 28 28 H 1.09005 * 109.47598 * 29.97224 * 1 2 3 29 29 H 1.08999 * 109.47199 * 149.97326 * 1 2 3 30 30 H 1.07991 * 120.02177 * 0.02562 * 6 5 4 31 31 H 1.08007 * 119.94578 * 180.25355 * 7 6 5 32 32 H 1.08005 * 119.91957 * 179.71969 * 8 7 6 33 33 H 1.07993 * 119.98691 * 180.02562 * 9 8 7 34 34 H 1.08007 * 126.13630 * 179.88221 * 12 4 3 35 35 H 1.09006 * 109.46960 * 19.97717 * 14 13 12 36 36 H 1.08999 * 109.46807 * 139.97021 * 14 13 12 37 37 H 0.97004 * 119.99762 * 174.87335 * 19 18 16 38 38 H 1.09004 * 115.54553 * 332.94194 * 24 15 14 39 39 H 1.09005 * 117.49726 * 359.97438 * 25 24 15 40 40 H 1.08998 * 117.50286 * 145.01923 * 25 24 15 41 41 H 1.08997 * 117.49868 * 214.97959 * 26 24 15 42 42 H 1.08998 * 117.50097 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0606 0.0000 4 7 3.6089 0.6355 0.0049 5 6 4.7394 1.4656 0.0114 6 6 6.0109 0.9090 0.0180 7 6 7.1226 1.7289 0.0191 8 6 6.9710 3.1034 0.0251 9 6 5.7068 3.6627 0.0238 10 6 4.5890 2.8477 0.0170 11 9 3.3534 3.3938 0.0163 12 6 3.6144 -0.7165 -0.0009 13 6 2.3269 -1.1335 -0.0006 14 6 1.8591 -2.5661 -0.0004 15 7 1.4787 -2.9558 -1.3604 16 6 2.4110 -3.5004 -2.2026 17 1 2.3978 -3.2547 -3.2542 18 6 3.3731 -4.3685 -1.7048 19 7 3.1718 -4.9881 -0.5612 20 14 4.9535 -4.6571 -2.6579 21 1 5.9777 -3.6713 -2.2284 22 1 5.4477 -6.0319 -2.3922 23 1 4.6914 -4.4974 -4.1109 24 6 0.1009 -2.7627 -1.8194 25 6 -0.2769 -3.3426 -3.1839 26 6 -0.1225 -1.8295 -3.0110 27 1 -0.3634 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 6.1309 -0.1642 0.0179 31 1 8.1120 1.2956 0.0202 32 1 7.8425 3.7415 0.0305 33 1 5.5917 4.7365 0.0280 34 1 4.4892 -1.3499 -0.0010 35 1 2.6645 -3.2113 0.3506 36 1 0.9984 -2.6671 0.6607 37 1 3.8087 -5.6501 -0.2496 38 1 -0.6603 -2.7742 -1.0393 39 1 0.4997 -3.8674 -3.7403 40 1 -1.2869 -3.7351 -3.3017 41 1 -1.0310 -1.2272 -3.0151 42 1 0.7555 -1.3588 -3.4532 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594603722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:10 Heat of formation + Delta-G solvation = 117.713263 kcal Electronic energy + Delta-G solvation = -26371.367021 eV Core-core repulsion = 22655.695655 eV Total energy + Delta-G solvation = -3715.671365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.63915 -41.04276 -38.85514 -37.03187 -34.08526 -33.41485 -31.21243 -30.71897 -30.41424 -29.10599 -27.14029 -25.61804 -23.79201 -22.69289 -22.19471 -21.35873 -20.28910 -19.83476 -19.03265 -17.93620 -16.99256 -16.27980 -15.86190 -15.69344 -15.49631 -14.97422 -14.66809 -14.45410 -14.32592 -13.95705 -13.52758 -13.19201 -13.03797 -12.81544 -12.55881 -12.43694 -12.08322 -12.01444 -11.98214 -11.48198 -11.32978 -11.16972 -10.88948 -10.71286 -10.61761 -10.52886 -10.08559 -9.86635 -9.74731 -9.56153 -9.26775 -8.98168 -8.49571 -8.43255 -7.50401 -6.53018 -5.88487 -3.42295 0.82285 1.02975 2.49281 2.69969 3.25813 3.33139 3.36045 3.39276 3.58391 4.12836 4.38451 4.50290 4.68794 4.93841 4.97577 5.07804 5.17372 5.28880 5.35565 5.36303 5.46523 5.72376 5.84012 5.88327 5.91994 5.99422 6.03520 6.05752 6.18376 6.20389 6.25267 6.31361 6.46580 6.49575 6.58107 6.61792 6.66204 6.95007 7.02334 7.15817 7.23537 7.55591 7.58046 7.77724 8.16622 8.46156 9.10946 9.73140 10.30553 11.13021 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.005084 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.052290 B = 5506.140228 C = 7038.030645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.095 3.905 3 N -0.296 5.296 4 N -0.340 5.340 5 C 0.153 3.847 6 C -0.125 4.125 7 C -0.100 4.100 8 C -0.117 4.117 9 C -0.133 4.133 10 C 0.086 3.914 11 F -0.118 7.118 12 C 0.048 3.952 13 C -0.193 4.193 14 C 0.212 3.788 15 N -0.542 5.542 16 C -0.252 4.252 17 H 0.060 0.940 18 C 0.016 3.984 19 N -0.888 5.888 20 Si 0.895 3.105 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.129 3.871 25 C -0.193 4.193 26 C -0.227 4.227 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.170 0.830 35 H 0.106 0.894 36 H 0.039 0.961 37 H 0.257 0.743 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.786 11.968 3.189 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 N -0.115 5.115 4 N -0.116 5.116 5 C 0.058 3.942 6 C -0.146 4.146 7 C -0.119 4.119 8 C -0.136 4.136 9 C -0.153 4.153 10 C 0.064 3.936 11 F -0.097 7.097 12 C -0.091 4.091 13 C -0.205 4.205 14 C 0.085 3.915 15 N -0.257 5.257 16 C -0.382 4.382 17 H 0.078 0.922 18 C -0.184 4.184 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.203 1.203 24 C 0.020 3.980 25 C -0.231 4.231 26 C -0.268 4.268 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.188 0.812 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.949 13.106 3.337 14.089 hybrid contribution 0.787 -0.914 -0.766 1.429 sum 4.736 12.192 2.571 13.330 Atomic orbital electron populations 1.20322 0.86903 1.03888 1.02355 1.22486 0.96885 0.90683 0.97253 1.77488 0.85168 1.22353 1.26512 1.45567 1.03717 1.04279 1.58081 1.17698 0.85613 0.88453 1.02467 1.20836 0.89444 1.01377 1.02986 1.20995 0.98351 0.93258 0.99329 1.20964 0.96529 0.95100 1.01045 1.21053 0.91202 1.00258 1.02765 1.17302 0.81163 0.89189 1.05915 1.91574 1.39154 1.85343 1.93581 1.22358 1.00206 0.82795 1.03753 1.21543 0.90930 0.99451 1.08607 1.19413 0.99974 0.86367 0.85786 1.43342 1.02915 1.67759 1.11731 1.18931 1.06382 1.21051 0.91810 0.92241 1.25145 1.00053 0.96007 0.97218 1.69872 1.36115 1.25167 1.21859 0.86406 0.83943 0.77156 0.80019 1.21317 1.21586 1.20285 1.21101 0.88354 0.99938 0.88623 1.23072 1.00841 0.95623 1.03597 1.23402 1.01312 0.92585 1.09483 0.91067 0.91552 0.89099 0.84228 0.84623 0.84833 0.84303 0.81243 0.87665 0.94304 0.93230 0.89496 0.88375 0.90709 0.90919 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.26 36.01 0.37 -0.85 16 2 C 0.10 1.87 7.22 -82.37 -0.59 1.28 16 3 N -0.30 -6.07 10.81 33.69 0.36 -5.71 16 4 N -0.34 -6.62 3.80 -10.65 -0.04 -6.66 16 5 C 0.15 2.55 6.70 -83.50 -0.56 1.99 16 6 C -0.13 -1.70 9.46 -39.41 -0.37 -2.07 16 7 C -0.10 -1.05 10.04 -39.60 -0.40 -1.45 16 8 C -0.12 -1.13 10.04 -39.56 -0.40 -1.53 16 9 C -0.13 -1.54 10.02 -39.54 -0.40 -1.94 16 10 C 0.09 1.34 7.29 -39.25 -0.29 1.05 16 11 F -0.12 -2.08 15.54 2.25 0.03 -2.05 16 12 C 0.05 0.96 10.71 -17.10 -0.18 0.78 16 13 C -0.19 -4.03 5.68 -105.03 -0.60 -4.62 16 14 C 0.21 4.71 5.45 -5.19 -0.03 4.68 16 15 N -0.54 -12.74 2.75 -167.02 -0.46 -13.20 16 16 C -0.25 -6.51 8.26 -15.06 -0.12 -6.64 16 17 H 0.06 1.60 7.10 -52.49 -0.37 1.22 16 18 C 0.02 0.41 4.97 -17.43 -0.09 0.33 16 19 N -0.89 -23.82 11.40 55.49 0.63 -23.19 16 20 Si 0.90 20.61 29.61 -169.99 -5.03 15.58 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 C 0.13 2.64 4.83 -67.93 -0.33 2.32 16 25 C -0.19 -3.77 9.78 -26.69 -0.26 -4.03 16 26 C -0.23 -4.31 9.90 -26.69 -0.26 -4.57 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.47 4.61 -51.93 -0.24 1.23 16 30 H 0.14 1.81 6.74 -52.49 -0.35 1.45 16 31 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 32 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.17 3.15 7.04 -52.48 -0.37 2.78 16 35 H 0.11 2.61 5.46 -51.93 -0.28 2.33 16 36 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 38 H 0.09 1.63 7.39 -51.93 -0.38 1.24 16 39 H 0.10 2.13 6.69 -51.93 -0.35 1.78 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -29.89 352.13 -8.99 -38.88 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.29 Total: 6.31 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -4.51 Total: -15.27 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.50 Total: -48.76 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.03 Total: -2.05 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.89 -8.99 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594603722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.594 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds