Wall clock time and date at job start Tue Mar 31 2020 10:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30892 * 125.87736 * 2 1 4 4 N 1.40089 * 108.21421 * 179.78792 * 3 2 1 5 5 C 1.40257 * 126.04884 * 180.24468 * 4 3 2 6 6 C 1.38797 * 120.06981 * 179.89100 * 5 4 3 7 7 C 1.38132 * 119.95104 * 179.74963 * 6 5 4 8 8 C 1.38292 * 120.11358 * 0.55017 * 7 6 5 9 9 C 1.38240 * 120.15695 * 359.70423 * 8 7 6 10 10 C 1.38343 * 120.03795 * 0.02562 * 9 8 7 11 11 F 1.35097 * 120.05839 * 179.97438 * 10 9 8 12 12 C 1.35204 * 107.89271 * 0.38977 * 4 3 2 13 13 C 1.35330 * 107.71805 * 359.61862 * 12 4 3 14 14 C 1.50703 * 126.03499 * 180.26306 * 13 12 4 15 15 N 1.46497 * 109.47003 * 259.97688 * 14 13 12 16 16 C 1.36934 * 120.00094 * 90.00088 * 15 14 13 17 17 H 1.07997 * 119.99961 * 217.30182 * 16 15 14 18 18 C 1.38815 * 120.00130 * 37.30114 * 16 15 14 19 19 N 1.31615 * 119.99806 * 20.76612 * 18 16 15 20 20 Si 1.86795 * 120.00047 * 200.76580 * 18 16 15 21 21 H 1.48501 * 109.47180 * 89.99753 * 20 18 16 22 22 H 1.48493 * 109.47245 * 209.99900 * 20 18 16 23 23 H 1.48501 * 109.47044 * 329.99980 * 20 18 16 24 24 C 1.46501 * 119.99794 * 269.99864 * 15 14 13 25 25 C 1.52996 * 117.50001 * 187.27460 * 24 15 14 26 26 C 1.52995 * 117.49880 * 118.61088 * 24 15 14 27 27 H 1.09002 * 109.47485 * 269.97125 * 1 2 3 28 28 H 1.09005 * 109.47598 * 29.97224 * 1 2 3 29 29 H 1.08999 * 109.47199 * 149.97326 * 1 2 3 30 30 H 1.07991 * 120.02177 * 0.02562 * 6 5 4 31 31 H 1.08007 * 119.94578 * 180.25355 * 7 6 5 32 32 H 1.08005 * 119.91957 * 179.71969 * 8 7 6 33 33 H 1.07993 * 119.98691 * 180.02562 * 9 8 7 34 34 H 1.08007 * 126.13630 * 179.88221 * 12 4 3 35 35 H 1.09006 * 109.46960 * 19.97717 * 14 13 12 36 36 H 1.08999 * 109.46807 * 139.97021 * 14 13 12 37 37 H 0.97004 * 119.99762 * 174.87335 * 19 18 16 38 38 H 1.09004 * 115.54553 * 332.94194 * 24 15 14 39 39 H 1.09005 * 117.49726 * 359.97438 * 25 24 15 40 40 H 1.08998 * 117.50286 * 145.01923 * 25 24 15 41 41 H 1.08997 * 117.49868 * 214.97959 * 26 24 15 42 42 H 1.08998 * 117.50097 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0606 0.0000 4 7 3.6089 0.6355 0.0049 5 6 4.7394 1.4656 0.0114 6 6 6.0109 0.9090 0.0180 7 6 7.1226 1.7289 0.0191 8 6 6.9710 3.1034 0.0251 9 6 5.7068 3.6627 0.0238 10 6 4.5890 2.8477 0.0170 11 9 3.3534 3.3938 0.0163 12 6 3.6144 -0.7165 -0.0009 13 6 2.3269 -1.1335 -0.0006 14 6 1.8591 -2.5661 -0.0004 15 7 1.4787 -2.9558 -1.3604 16 6 2.4110 -3.5004 -2.2026 17 1 2.3978 -3.2547 -3.2542 18 6 3.3731 -4.3685 -1.7048 19 7 3.1718 -4.9881 -0.5612 20 14 4.9535 -4.6571 -2.6579 21 1 5.9777 -3.6713 -2.2284 22 1 5.4477 -6.0319 -2.3922 23 1 4.6914 -4.4974 -4.1109 24 6 0.1009 -2.7627 -1.8194 25 6 -0.2769 -3.3426 -3.1839 26 6 -0.1225 -1.8295 -3.0110 27 1 -0.3634 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 6.1309 -0.1642 0.0179 31 1 8.1120 1.2956 0.0202 32 1 7.8425 3.7415 0.0305 33 1 5.5917 4.7365 0.0280 34 1 4.4892 -1.3499 -0.0010 35 1 2.6645 -3.2113 0.3506 36 1 0.9984 -2.6671 0.6607 37 1 3.8087 -5.6501 -0.2496 38 1 -0.6603 -2.7742 -1.0393 39 1 0.4997 -3.8674 -3.7403 40 1 -1.2869 -3.7351 -3.3017 41 1 -1.0310 -1.2272 -3.0151 42 1 0.7555 -1.3588 -3.4532 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594603722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:09 Heat of formation + Delta-G solvation = 103.419848 kcal Electronic energy + Delta-G solvation = -26371.986830 eV Core-core repulsion = 22655.695655 eV Total energy + Delta-G solvation = -3716.291174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.85270 -42.47654 -39.90109 -38.68943 -35.57075 -34.97940 -32.95025 -31.77812 -31.64940 -30.67939 -28.42667 -27.34156 -25.39489 -23.83510 -23.40307 -22.91619 -21.83115 -21.43816 -20.45390 -19.22081 -18.24964 -17.89194 -17.26270 -17.04583 -16.94860 -16.29813 -15.97849 -15.87245 -15.75540 -15.51048 -14.76394 -14.74747 -14.37011 -14.12386 -14.02999 -13.80785 -13.56299 -13.17449 -13.10260 -12.97730 -12.86751 -12.69631 -12.58915 -12.34439 -12.20838 -12.14248 -11.90465 -11.37522 -11.31062 -11.04426 -10.84996 -10.39071 -10.01062 -9.85935 -8.86567 -8.40199 -7.82179 -5.40242 -0.28984 0.06058 1.15596 1.38393 1.41496 1.45430 1.52942 1.80653 2.48964 2.56517 3.06608 3.17662 3.38851 3.49120 3.67893 3.73926 3.84293 3.96903 4.15897 4.23788 4.30771 4.35498 4.46341 4.54327 4.59169 4.62537 4.76651 4.82001 4.89833 4.95526 4.97213 5.06741 5.12056 5.16006 5.19560 5.30992 5.32831 5.41583 5.56269 5.64228 5.70085 5.74287 5.86071 6.18808 6.50585 6.69524 7.18474 7.88203 8.39843 9.14875 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.005084 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.052290 B = 5506.140228 C = 7038.030645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.087 3.913 3 N -0.318 5.318 4 N -0.340 5.340 5 C 0.105 3.895 6 C -0.134 4.134 7 C -0.090 4.090 8 C -0.094 4.094 9 C -0.127 4.127 10 C 0.057 3.943 11 F -0.139 7.139 12 C 0.044 3.956 13 C -0.215 4.215 14 C 0.222 3.778 15 N -0.556 5.556 16 C -0.255 4.255 17 H 0.042 0.958 18 C -0.021 4.021 19 N -0.911 5.911 20 Si 0.945 3.055 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.281 1.281 24 C 0.112 3.888 25 C -0.191 4.191 26 C -0.207 4.207 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.137 0.863 31 H 0.173 0.827 32 H 0.181 0.819 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.255 0.745 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 13.827 3.148 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 N -0.138 5.138 4 N -0.116 5.116 5 C 0.012 3.988 6 C -0.155 4.155 7 C -0.109 4.109 8 C -0.113 4.113 9 C -0.146 4.146 10 C 0.036 3.964 11 F -0.118 7.118 12 C -0.097 4.097 13 C -0.228 4.228 14 C 0.095 3.905 15 N -0.273 5.273 16 C -0.385 4.385 17 H 0.059 0.941 18 C -0.219 4.219 19 N -0.555 5.555 20 Si 0.773 3.227 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.003 3.997 25 C -0.230 4.230 26 C -0.248 4.248 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.155 0.845 31 H 0.190 0.810 32 H 0.198 0.802 33 H 0.184 0.816 34 H 0.191 0.809 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.325 15.007 3.291 16.261 hybrid contribution 0.516 -1.359 -0.754 1.637 sum 5.841 13.648 2.537 15.061 Atomic orbital electron populations 1.20406 0.84642 1.04203 1.03831 1.22917 0.98384 0.89850 0.96923 1.77411 0.85961 1.23075 1.27396 1.45712 1.04189 1.04245 1.57484 1.18230 0.85708 0.89005 1.05905 1.21074 0.89387 1.01900 1.03108 1.21490 0.98751 0.93584 0.97045 1.21550 0.97130 0.95234 0.97342 1.21466 0.90602 1.01328 1.01205 1.17805 0.81584 0.89357 1.07678 1.91509 1.40738 1.85523 1.94007 1.22457 1.00281 0.83563 1.03399 1.21407 0.91672 0.99053 1.10627 1.19148 0.99215 0.86715 0.85373 1.43462 1.03934 1.68129 1.11744 1.18908 1.07388 1.20800 0.91438 0.94050 1.25626 1.02075 0.96154 0.98081 1.69976 1.36765 1.25786 1.22941 0.85638 0.81380 0.76965 0.78695 1.20608 1.21564 1.20648 1.21362 0.87487 1.01164 0.89653 1.23080 1.01558 0.95903 1.02411 1.23280 1.01413 0.92437 1.07650 0.88993 0.90613 0.89169 0.84500 0.80977 0.80161 0.81594 0.80865 0.90440 0.93577 0.93515 0.87287 0.91177 0.87640 0.87656 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.26 71.24 0.73 -1.54 16 2 C 0.09 3.48 7.22 43.10 0.31 3.79 16 3 N -0.32 -13.41 10.81 -47.34 -0.51 -13.92 16 4 N -0.34 -13.68 3.80 -187.60 -0.71 -14.39 16 5 C 0.11 3.54 6.70 38.11 0.26 3.79 16 6 C -0.13 -3.51 9.46 22.38 0.21 -3.30 16 7 C -0.09 -1.56 10.04 22.26 0.22 -1.34 16 8 C -0.09 -1.38 10.04 22.28 0.22 -1.16 16 9 C -0.13 -2.56 10.02 22.30 0.22 -2.34 16 10 C 0.06 1.75 7.29 22.48 0.16 1.92 16 11 F -0.14 -4.99 15.54 44.97 0.70 -4.30 16 12 C 0.04 1.83 10.71 83.50 0.89 2.72 16 13 C -0.22 -9.27 5.68 -20.13 -0.11 -9.38 16 14 C 0.22 10.20 5.45 85.63 0.47 10.67 16 15 N -0.56 -26.72 2.75 -682.34 -1.88 -28.60 16 16 C -0.25 -13.57 8.26 84.03 0.69 -12.88 16 17 H 0.04 2.32 7.10 -2.91 -0.02 2.30 16 18 C -0.02 -1.14 4.97 84.86 0.42 -0.72 16 19 N -0.91 -50.16 11.40 21.65 0.25 -49.91 16 20 Si 0.94 43.13 29.61 68.60 2.03 45.17 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 C 0.11 4.53 4.83 44.99 0.22 4.74 16 25 C -0.19 -7.35 9.78 30.62 0.30 -7.05 16 26 C -0.21 -7.70 9.90 30.62 0.30 -7.40 16 27 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.09 2.82 4.61 -2.39 -0.01 2.80 16 30 H 0.14 3.55 6.74 -2.92 -0.02 3.53 16 31 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.17 6.80 7.04 -2.91 -0.02 6.78 16 35 H 0.08 4.01 5.46 -2.38 -0.01 4.00 16 36 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 37 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 38 H 0.11 3.92 7.39 -2.39 -0.02 3.90 16 39 H 0.07 3.10 6.69 -2.38 -0.02 3.08 16 40 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -68.33 352.13 6.44 -61.89 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 1.04 Total: 23.54 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 5.53 Total: -19.47 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -2.86 Total: -106.82 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.70 Total: -4.30 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.17 kcal Total: -68.33 6.44 -61.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594603722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.305 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds