Wall clock time and date at job start Tue Mar 31 2020 10:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39871 * 126.03637 * 2 1 4 4 N 1.30920 * 108.23700 * 179.71676 * 3 2 1 5 5 N 1.40088 * 108.21301 * 0.43720 * 4 3 2 6 6 C 1.40379 * 126.04920 * 179.81860 * 5 4 3 7 7 C 1.38802 * 120.00341 * 359.69450 * 6 5 4 8 8 C 1.38044 * 120.03188 * 180.02562 * 7 6 5 9 9 C 1.38932 * 120.04139 * 0.02562 * 8 7 6 10 10 N 1.39782 * 120.00258 * 179.97438 * 9 8 7 11 11 C 1.46502 * 119.99907 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.46955 * 179.45692 * 11 10 9 13 13 C 1.50700 * 115.55156 * 294.86738 * 12 11 10 14 14 H 1.08009 * 119.99674 * 94.64954 * 13 12 11 15 15 C 1.37879 * 120.00557 * 274.65343 * 13 12 11 16 16 N 1.31515 * 119.99313 * 6.61687 * 15 13 12 17 17 Si 1.86797 * 120.00213 * 186.61659 * 15 13 12 18 18 H 1.48495 * 109.47210 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46857 * 119.99807 * 17 15 13 20 20 H 1.48498 * 109.47204 * 239.99557 * 17 15 13 21 21 C 1.53003 * 117.49930 * 80.53972 * 12 11 10 22 22 C 1.52999 * 117.50084 * 149.20191 * 12 11 10 23 23 C 1.38883 * 119.99937 * 0.26039 * 9 8 7 24 24 C 1.38254 * 119.96711 * 359.46381 * 23 9 8 25 25 F 1.35093 * 120.01835 * 180.27370 * 24 23 9 26 26 C 1.35170 * 107.89852 * 359.55552 * 5 4 3 27 27 H 1.08994 * 109.47413 * 270.00145 * 1 2 3 28 28 H 1.09008 * 109.46808 * 30.00516 * 1 2 3 29 29 H 1.09001 * 109.46906 * 149.99845 * 1 2 3 30 30 H 1.08005 * 125.88222 * 0.02924 * 3 2 1 31 31 H 1.08005 * 119.97943 * 0.02562 * 7 6 5 32 32 H 1.08011 * 119.98024 * 180.02562 * 8 7 6 33 33 H 0.96992 * 119.99855 * 0.02562 * 10 9 8 34 34 H 1.09000 * 109.47222 * 59.45670 * 11 10 9 35 35 H 1.09000 * 109.47096 * 299.45509 * 11 10 9 36 36 H 0.96997 * 119.99941 * 174.95428 * 16 15 13 37 37 H 1.09003 * 117.49786 * 215.00258 * 21 12 11 38 38 H 1.08999 * 117.49613 * 0.02562 * 21 12 11 39 39 H 1.09006 * 117.49649 * 359.97098 * 22 12 11 40 40 H 1.08998 * 117.50307 * 144.97498 * 22 12 11 41 41 H 1.07999 * 120.01551 * 179.72659 * 23 9 8 42 42 H 1.07998 * 126.13786 * 180.24117 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1311 0.0000 4 7 3.5764 0.7309 0.0061 5 7 3.5865 -0.6700 0.0001 6 6 4.7275 -1.4878 0.0002 7 6 5.9919 -0.9153 0.0002 8 6 7.1142 -1.7190 -0.0002 9 6 6.9795 -3.1017 -0.0013 10 7 8.1166 -3.9148 -0.0023 11 6 7.9744 -5.3729 -0.0040 12 6 9.3605 -6.0203 -0.0185 13 6 10.1797 -5.7748 -1.2594 14 1 10.8914 -4.9627 -1.2847 15 6 10.0207 -6.5867 -2.3624 16 7 9.0661 -7.4912 -2.3809 17 14 11.1611 -6.4020 -3.8303 18 1 12.1436 -5.3216 -3.5610 19 1 11.8820 -7.6797 -4.0609 20 1 10.3647 -6.0585 -5.0357 21 6 10.1077 -6.1200 1.3129 22 6 9.5139 -7.3770 0.6720 23 6 5.7151 -3.6762 -0.0074 24 6 4.5909 -2.8715 -0.0011 25 9 3.3605 -3.4293 -0.0015 26 6 2.3033 -1.0947 0.0001 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3633 -0.8900 -0.5139 30 1 1.9946 2.1578 0.0004 31 1 6.0976 0.1596 0.0007 32 1 8.0978 -1.2725 0.0003 33 1 8.9996 -3.5136 -0.0019 34 1 7.4193 -5.6828 -0.8894 35 1 7.4363 -5.6865 0.8904 36 1 8.9070 -8.0121 -3.1835 37 1 11.1917 -6.0079 1.2913 38 1 9.6115 -5.7247 2.1992 39 1 8.6273 -7.8080 1.1372 40 1 10.2069 -8.0920 0.2287 41 1 5.6101 -4.7511 -0.0127 42 1 1.9727 -2.1228 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594705895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:53 Heat of formation + Delta-G solvation = 87.212933 kcal Electronic energy + Delta-G solvation = -25093.334393 eV Core-core repulsion = 21376.340434 eV Total energy + Delta-G solvation = -3716.993959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.09634 -41.37215 -39.16861 -37.11319 -34.91195 -32.73993 -32.08501 -31.57945 -30.54900 -28.74532 -26.55323 -25.73225 -25.14606 -22.72446 -22.56221 -21.27693 -20.97068 -20.05337 -19.33290 -17.93601 -17.52464 -16.47365 -15.95270 -15.83132 -15.37859 -14.94896 -14.89247 -14.81482 -14.57807 -14.05783 -13.82571 -13.42917 -13.34660 -13.21073 -13.07994 -12.75330 -12.56665 -12.43879 -11.92490 -11.75136 -11.62822 -11.35040 -11.10003 -11.03658 -10.63002 -10.58736 -10.48422 -10.35365 -9.71158 -9.32031 -8.98504 -8.82984 -8.61437 -8.47120 -8.33101 -6.88709 -6.19888 -4.28194 1.02149 1.29773 2.29263 2.42797 2.70762 3.18116 3.27859 3.29956 3.75598 3.82459 4.17890 4.27083 4.49103 4.76680 4.93717 5.08642 5.14571 5.17952 5.23450 5.30437 5.36546 5.58806 5.61708 5.72032 5.83233 5.87432 5.94274 6.04916 6.09975 6.16314 6.24473 6.27038 6.27999 6.40638 6.55325 6.60173 6.63841 6.76388 6.94376 7.21833 7.24794 7.32597 7.65037 7.70551 7.72800 8.17588 8.22330 8.73101 9.39605 10.87979 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002781 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.467632 B =10064.787015 C =10213.843767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.247 4.247 3 C 0.048 3.952 4 N -0.296 5.296 5 N -0.299 5.299 6 C 0.035 3.965 7 C -0.036 4.036 8 C -0.195 4.195 9 C 0.259 3.741 10 N -0.704 5.704 11 C 0.158 3.842 12 C 0.028 3.972 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.074 3.926 16 N -0.876 5.876 17 Si 0.890 3.110 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.210 4.210 22 C -0.147 4.147 23 C -0.219 4.219 24 C 0.137 3.863 25 F -0.136 7.136 26 C 0.044 3.956 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.184 0.816 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.407 0.593 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.145 0.855 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 11.104 5.487 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.258 4.258 3 C -0.138 4.138 4 N -0.116 5.116 5 N -0.074 5.074 6 C -0.060 4.060 7 C -0.057 4.057 8 C -0.218 4.218 9 C 0.147 3.853 10 N -0.325 5.325 11 C 0.035 3.965 12 C 0.027 3.973 13 C -0.538 4.538 14 H 0.079 0.921 15 C -0.130 4.130 16 N -0.512 5.512 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.247 4.247 22 C -0.186 4.186 23 C -0.244 4.244 24 C 0.115 3.885 25 F -0.114 7.114 26 C -0.100 4.100 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.201 0.799 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.242 0.758 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.163 0.837 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.263 10.921 5.391 15.927 hybrid contribution -0.221 -0.313 -0.933 1.009 sum -10.484 10.608 4.458 15.567 Atomic orbital electron populations 1.20022 0.89198 1.02083 1.01440 1.20169 0.97182 0.91737 1.16723 1.23843 0.89953 0.99802 1.00204 1.77370 1.21299 0.87873 1.25035 1.45501 1.03684 1.04383 1.53793 1.17108 0.85706 0.86519 1.16656 1.20392 0.88671 1.00496 0.96134 1.20541 0.98981 0.91223 1.11076 1.17731 0.87417 0.90138 0.90024 1.45093 1.05206 1.06254 1.75961 1.21157 0.98840 0.77323 0.99205 1.18971 0.91509 0.96022 0.90768 1.20373 1.21851 1.14783 0.96776 0.92135 1.24976 0.95183 0.94400 0.98418 1.69963 1.30085 1.22969 1.28135 0.86567 0.81072 0.78076 0.82503 1.19692 1.20888 1.20950 1.23033 0.99296 1.05088 0.97277 1.22506 1.01083 0.91613 1.03358 1.20368 0.89440 1.00653 1.13942 1.16887 0.80014 0.88265 1.03366 1.91351 1.40358 1.85747 1.93971 1.23023 0.83524 1.01253 1.02246 0.92204 0.91929 0.92143 0.79903 0.84114 0.84716 0.75757 0.91015 0.94756 0.92823 0.90291 0.91566 0.91671 0.89749 0.83737 0.79754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.37 36.00 0.37 -0.20 16 2 C -0.25 -2.92 6.10 -105.04 -0.64 -3.56 16 3 C 0.05 0.57 11.96 -17.33 -0.21 0.37 16 4 N -0.30 -4.38 11.87 30.64 0.36 -4.02 16 5 N -0.30 -4.58 3.80 -10.61 -0.04 -4.62 16 6 C 0.03 0.53 6.70 -83.43 -0.56 -0.02 16 7 C -0.04 -0.52 9.65 -39.44 -0.38 -0.90 16 8 C -0.19 -2.71 9.89 -39.40 -0.39 -3.10 16 9 C 0.26 4.08 6.65 -83.74 -0.56 3.52 16 10 N -0.70 -12.05 5.65 -58.61 -0.33 -12.38 16 11 C 0.16 3.11 4.74 -4.04 -0.02 3.09 16 12 C 0.03 0.61 1.37 -155.66 -0.21 0.40 16 13 C -0.50 -12.27 8.66 -34.44 -0.30 -12.57 16 14 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 15 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 16 N -0.88 -23.12 12.92 55.43 0.72 -22.40 16 17 Si 0.89 20.02 29.55 -169.99 -5.02 15.00 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.21 -4.08 9.96 -26.69 -0.27 -4.35 16 22 C -0.15 -3.15 9.42 -26.69 -0.25 -3.40 16 23 C -0.22 -3.47 9.28 -39.34 -0.37 -3.83 16 24 C 0.14 2.11 7.22 -39.28 -0.28 1.83 16 25 F -0.14 -1.98 13.93 2.25 0.03 -1.95 16 26 C 0.04 0.60 10.45 -17.10 -0.18 0.42 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.18 1.52 8.06 -52.48 -0.42 1.10 16 31 H 0.14 1.86 7.69 -52.48 -0.40 1.45 16 32 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 33 H 0.41 6.75 8.40 -40.82 -0.34 6.40 16 34 H 0.07 1.59 7.91 -51.93 -0.41 1.18 16 35 H 0.03 0.63 7.93 -51.93 -0.41 0.22 16 36 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 41 H 0.14 2.29 6.72 -52.49 -0.35 1.94 16 42 H 0.19 2.26 5.71 -52.49 -0.30 1.96 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -27.19 360.48 -8.76 -35.95 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.57 Total: 9.50 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -4.33 Total: -20.52 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.71 Total: -43.42 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.03 Total: -1.95 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.19 -8.76 -35.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594705895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.160 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds