Wall clock time and date at job start Tue Mar 31 2020 10:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39871 * 126.03637 * 2 1 4 4 N 1.30920 * 108.23700 * 179.71676 * 3 2 1 5 5 N 1.40088 * 108.21301 * 0.43720 * 4 3 2 6 6 C 1.40379 * 126.04920 * 179.81860 * 5 4 3 7 7 C 1.38802 * 120.00341 * 359.69450 * 6 5 4 8 8 C 1.38044 * 120.03188 * 180.02562 * 7 6 5 9 9 C 1.38932 * 120.04139 * 0.02562 * 8 7 6 10 10 N 1.39782 * 120.00258 * 179.97438 * 9 8 7 11 11 C 1.46502 * 119.99907 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.46955 * 179.45692 * 11 10 9 13 13 C 1.50700 * 115.55156 * 294.86738 * 12 11 10 14 14 H 1.08009 * 119.99674 * 94.64954 * 13 12 11 15 15 C 1.37879 * 120.00557 * 274.65343 * 13 12 11 16 16 N 1.31515 * 119.99313 * 6.61687 * 15 13 12 17 17 Si 1.86797 * 120.00213 * 186.61659 * 15 13 12 18 18 H 1.48495 * 109.47210 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46857 * 119.99807 * 17 15 13 20 20 H 1.48498 * 109.47204 * 239.99557 * 17 15 13 21 21 C 1.53003 * 117.49930 * 80.53972 * 12 11 10 22 22 C 1.52999 * 117.50084 * 149.20191 * 12 11 10 23 23 C 1.38883 * 119.99937 * 0.26039 * 9 8 7 24 24 C 1.38254 * 119.96711 * 359.46381 * 23 9 8 25 25 F 1.35093 * 120.01835 * 180.27370 * 24 23 9 26 26 C 1.35170 * 107.89852 * 359.55552 * 5 4 3 27 27 H 1.08994 * 109.47413 * 270.00145 * 1 2 3 28 28 H 1.09008 * 109.46808 * 30.00516 * 1 2 3 29 29 H 1.09001 * 109.46906 * 149.99845 * 1 2 3 30 30 H 1.08005 * 125.88222 * 0.02924 * 3 2 1 31 31 H 1.08005 * 119.97943 * 0.02562 * 7 6 5 32 32 H 1.08011 * 119.98024 * 180.02562 * 8 7 6 33 33 H 0.96992 * 119.99855 * 0.02562 * 10 9 8 34 34 H 1.09000 * 109.47222 * 59.45670 * 11 10 9 35 35 H 1.09000 * 109.47096 * 299.45509 * 11 10 9 36 36 H 0.96997 * 119.99941 * 174.95428 * 16 15 13 37 37 H 1.09003 * 117.49786 * 215.00258 * 21 12 11 38 38 H 1.08999 * 117.49613 * 0.02562 * 21 12 11 39 39 H 1.09006 * 117.49649 * 359.97098 * 22 12 11 40 40 H 1.08998 * 117.50307 * 144.97498 * 22 12 11 41 41 H 1.07999 * 120.01551 * 179.72659 * 23 9 8 42 42 H 1.07998 * 126.13786 * 180.24117 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1311 0.0000 4 7 3.5764 0.7309 0.0061 5 7 3.5865 -0.6700 0.0001 6 6 4.7275 -1.4878 0.0002 7 6 5.9919 -0.9153 0.0002 8 6 7.1142 -1.7190 -0.0002 9 6 6.9795 -3.1017 -0.0013 10 7 8.1166 -3.9148 -0.0023 11 6 7.9744 -5.3729 -0.0040 12 6 9.3605 -6.0203 -0.0185 13 6 10.1797 -5.7748 -1.2594 14 1 10.8914 -4.9627 -1.2847 15 6 10.0207 -6.5867 -2.3624 16 7 9.0661 -7.4912 -2.3809 17 14 11.1611 -6.4020 -3.8303 18 1 12.1436 -5.3216 -3.5610 19 1 11.8820 -7.6797 -4.0609 20 1 10.3647 -6.0585 -5.0357 21 6 10.1077 -6.1200 1.3129 22 6 9.5139 -7.3770 0.6720 23 6 5.7151 -3.6762 -0.0074 24 6 4.5909 -2.8715 -0.0011 25 9 3.3605 -3.4293 -0.0015 26 6 2.3033 -1.0947 0.0001 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3633 -0.8900 -0.5139 30 1 1.9946 2.1578 0.0004 31 1 6.0976 0.1596 0.0007 32 1 8.0978 -1.2725 0.0003 33 1 8.9996 -3.5136 -0.0019 34 1 7.4193 -5.6828 -0.8894 35 1 7.4363 -5.6865 0.8904 36 1 8.9070 -8.0121 -3.1835 37 1 11.1917 -6.0079 1.2913 38 1 9.6115 -5.7247 2.1992 39 1 8.6273 -7.8080 1.1372 40 1 10.2069 -8.0920 0.2287 41 1 5.6101 -4.7511 -0.0127 42 1 1.9727 -2.1228 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594705895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:52 Heat of formation + Delta-G solvation = 74.979808 kcal Electronic energy + Delta-G solvation = -25093.864861 eV Core-core repulsion = 21376.340434 eV Total energy + Delta-G solvation = -3717.524427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.26187 -42.38046 -40.38768 -38.67684 -36.19349 -34.04362 -33.75922 -32.55442 -31.71661 -29.92479 -27.87393 -27.22561 -26.50628 -23.89969 -23.70995 -22.88212 -22.07564 -21.28317 -20.80795 -19.10842 -18.71512 -18.07627 -17.16347 -17.10399 -16.70600 -16.50252 -16.08554 -15.99256 -15.87222 -15.56790 -15.12749 -14.67538 -14.44732 -14.38195 -14.12290 -13.83495 -13.66043 -13.48769 -13.36402 -13.19499 -12.94967 -12.85874 -12.63547 -12.43030 -12.36125 -12.04223 -11.67970 -11.57754 -11.43164 -10.83400 -10.47254 -10.37306 -10.04307 -9.99837 -9.49425 -8.14595 -8.09542 -6.23602 -0.11716 0.13122 1.20058 1.38201 1.38558 1.43538 1.51145 1.79388 2.39113 2.46647 2.63958 2.99528 3.16822 3.44612 3.54473 3.70789 3.95155 4.11628 4.17589 4.22789 4.36709 4.42928 4.55199 4.61212 4.62940 4.66173 4.74150 4.86055 4.93717 4.96906 4.99642 5.00946 5.11385 5.15954 5.27237 5.27254 5.28449 5.52217 5.61986 5.63430 5.76798 5.77552 6.13835 6.31904 6.40931 6.64731 6.81656 6.91374 7.45602 8.94821 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002781 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.467632 B =10064.787015 C =10213.843767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.241 4.241 3 C 0.052 3.948 4 N -0.324 5.324 5 N -0.320 5.320 6 C 0.034 3.966 7 C -0.039 4.039 8 C -0.178 4.178 9 C 0.245 3.755 10 N -0.708 5.708 11 C 0.177 3.823 12 C 0.007 3.993 13 C -0.503 4.503 14 H 0.057 0.943 15 C 0.029 3.971 16 N -0.904 5.904 17 Si 0.943 3.057 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.287 1.287 21 C -0.181 4.181 22 C -0.158 4.158 23 C -0.226 4.226 24 C 0.127 3.873 25 F -0.135 7.135 26 C 0.021 3.979 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.409 0.591 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.259 0.741 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.137 0.863 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 13.299 6.111 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.252 4.252 3 C -0.134 4.134 4 N -0.144 5.144 5 N -0.095 5.095 6 C -0.060 4.060 7 C -0.059 4.059 8 C -0.202 4.202 9 C 0.135 3.865 10 N -0.331 5.331 11 C 0.053 3.947 12 C 0.006 3.994 13 C -0.541 4.541 14 H 0.076 0.924 15 C -0.172 4.172 16 N -0.542 5.542 17 Si 0.769 3.231 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.218 4.218 22 C -0.197 4.197 23 C -0.251 4.251 24 C 0.104 3.896 25 F -0.113 7.113 26 C -0.122 4.122 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.237 0.763 31 H 0.170 0.830 32 H 0.177 0.823 33 H 0.246 0.754 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.155 0.845 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.013 13.144 6.024 18.175 hybrid contribution -0.131 -0.868 -1.098 1.406 sum -11.143 12.276 4.926 17.295 Atomic orbital electron populations 1.20128 0.86648 1.03310 1.02528 1.20646 0.98861 0.90989 1.14660 1.24543 0.89127 1.01519 0.98192 1.77327 1.23000 0.87765 1.26306 1.45617 1.03919 1.04659 1.55313 1.17343 0.86570 0.86649 1.15478 1.20553 0.88276 1.01067 0.96010 1.20758 1.00068 0.90285 1.09055 1.17831 0.86842 0.90773 0.91026 1.44835 1.05698 1.05139 1.77449 1.20717 0.97099 0.78798 0.98110 1.19041 0.92630 0.96686 0.91054 1.20663 1.21562 1.14078 0.97769 0.92441 1.25590 0.96294 0.94597 1.00708 1.70063 1.31547 1.24036 1.28504 0.85745 0.79559 0.77827 0.79921 1.19026 1.21185 1.21309 1.23006 0.99288 1.02675 0.96800 1.22441 1.01392 0.91603 1.04230 1.20386 0.89948 1.00465 1.14282 1.16889 0.79997 0.88481 1.04196 1.91344 1.40187 1.85756 1.94034 1.23357 0.83508 1.02244 1.03118 0.91077 0.90025 0.91654 0.76323 0.82976 0.82305 0.75438 0.94408 0.93700 0.93211 0.90198 0.89083 0.90621 0.92192 0.84477 0.79363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.37 71.24 0.74 -0.20 16 2 C -0.24 -5.17 6.10 -20.13 -0.12 -5.29 16 3 C 0.05 1.12 11.96 85.22 1.02 2.14 16 4 N -0.32 -9.12 11.87 -56.97 -0.68 -9.79 16 5 N -0.32 -9.53 3.80 -187.49 -0.71 -10.24 16 6 C 0.03 1.04 6.70 38.10 0.26 1.30 16 7 C -0.04 -1.05 9.65 22.36 0.22 -0.83 16 8 C -0.18 -4.71 9.89 22.39 0.22 -4.49 16 9 C 0.25 7.60 6.65 38.19 0.25 7.85 16 10 N -0.71 -23.86 5.65 -339.33 -1.92 -25.78 16 11 C 0.18 6.99 4.74 86.38 0.41 7.40 16 12 C 0.01 0.28 1.37 -52.93 -0.07 0.21 16 13 C -0.50 -24.72 8.66 25.60 0.22 -24.50 16 14 H 0.06 2.80 7.82 -2.91 -0.02 2.77 16 15 C 0.03 1.49 5.39 84.65 0.46 1.95 16 16 N -0.90 -48.82 12.92 21.45 0.28 -48.55 16 17 Si 0.94 41.46 29.55 68.60 2.03 43.48 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 21 C -0.18 -6.76 9.96 30.62 0.30 -6.45 16 22 C -0.16 -6.76 9.42 30.62 0.29 -6.47 16 23 C -0.23 -7.23 9.28 22.43 0.21 -7.02 16 24 C 0.13 3.92 7.22 22.47 0.16 4.08 16 25 F -0.13 -3.97 13.93 44.97 0.63 -3.35 16 26 C 0.02 0.54 10.45 83.52 0.87 1.41 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.22 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.15 3.78 7.69 -2.91 -0.02 3.75 16 32 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.41 13.17 8.40 -92.71 -0.78 12.39 16 34 H 0.04 1.73 7.91 -2.39 -0.02 1.72 16 35 H 0.04 1.65 7.93 -2.39 -0.02 1.63 16 36 H 0.26 13.56 8.32 -92.71 -0.77 12.79 16 37 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 40 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.14 4.51 6.72 -2.91 -0.02 4.49 16 42 H 0.19 4.57 5.71 -2.91 -0.02 4.55 16 Total: -1.00 -58.48 360.48 5.32 -53.15 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.27 Total: 29.98 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 5.43 Total: -28.90 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -3.03 Total: -94.36 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.63 Total: -3.35 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -58.48 5.32 -53.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594705895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.133 kcal (2) G-P(sol) polarization free energy of solvation -58.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds