Wall clock time and date at job start Tue Mar 31 2020 10:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35717 * 126.24190 * 2 1 4 4 N 1.40767 * 126.06221 * 0.04378 * 3 2 1 5 5 C 1.46495 * 120.00116 * 185.09175 * 4 3 2 6 6 C 1.53002 * 109.47301 * 184.98294 * 5 4 3 7 7 C 1.50701 * 115.55122 * 275.78439 * 6 5 4 8 8 H 1.08001 * 120.00534 * 114.57901 * 7 6 5 9 9 C 1.37876 * 119.99529 * 294.58174 * 7 6 5 10 10 N 1.31519 * 120.00386 * 352.81210 * 9 7 6 11 11 Si 1.86805 * 119.99926 * 172.81504 * 9 7 6 12 12 H 1.48503 * 109.47183 * 89.99854 * 11 9 7 13 13 H 1.48496 * 109.47032 * 209.99529 * 11 9 7 14 14 H 1.48497 * 109.47105 * 330.00192 * 11 9 7 15 15 C 1.52997 * 117.49912 * 130.06922 * 6 5 4 16 16 C 1.52998 * 60.00214 * 252.51421 * 15 6 5 17 17 C 1.40271 * 107.87722 * 180.02562 * 3 2 1 18 18 N 1.30921 * 108.39627 * 0.02562 * 17 3 2 19 19 N 1.36222 * 126.23733 * 180.02562 * 2 1 3 20 20 C 1.40225 * 126.08196 * 0.22367 * 19 2 1 21 21 C 1.38800 * 120.07979 * 311.71400 * 20 19 2 22 22 C 1.38130 * 119.95622 * 179.74275 * 21 20 19 23 23 C 1.38291 * 120.11514 * 0.50637 * 22 21 20 24 24 C 1.38245 * 120.15349 * 359.77010 * 23 22 21 25 25 C 1.38337 * 120.04229 * 359.97288 * 24 23 22 26 26 F 1.35104 * 120.05689 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.46989 * 274.71733 * 1 2 3 28 28 H 1.09007 * 109.46933 * 34.72300 * 1 2 3 29 29 H 1.09007 * 109.46944 * 154.71916 * 1 2 3 30 30 H 0.97006 * 119.99741 * 5.08838 * 4 3 2 31 31 H 1.08997 * 109.47366 * 304.98658 * 5 4 3 32 32 H 1.09001 * 109.46939 * 64.98528 * 5 4 3 33 33 H 0.96994 * 119.99936 * 185.01235 * 10 9 7 34 34 H 1.08994 * 117.49937 * 0.02562 * 15 6 5 35 35 H 1.09003 * 117.49473 * 145.02407 * 15 6 5 36 36 H 1.09007 * 117.49832 * 252.51608 * 16 15 6 37 37 H 1.09000 * 117.52341 * 107.48187 * 16 15 6 38 38 H 1.07999 * 125.80721 * 180.02562 * 17 3 2 39 39 H 1.07995 * 120.01880 * 359.97438 * 21 20 19 40 40 H 1.08008 * 119.94211 * 180.27436 * 22 21 20 41 41 H 1.07999 * 119.92156 * 179.74351 * 23 22 21 42 42 H 1.08003 * 119.98288 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3093 1.0946 0.0000 4 7 1.8815 2.4357 0.0009 5 6 2.8626 3.5177 -0.1118 6 6 2.1548 4.8657 0.0386 7 6 1.5329 5.4172 -1.2185 8 1 0.4605 5.5247 -1.2883 9 6 2.3330 5.7845 -2.2796 10 7 3.6414 5.7879 -2.1463 11 14 1.5587 6.2774 -3.9065 12 1 1.3066 7.7408 -3.9116 13 1 2.4796 5.9299 -5.0184 14 1 0.2742 5.5533 -4.0829 15 6 2.7461 5.8671 1.0328 16 6 1.4386 5.1438 1.3617 17 6 3.6406 0.6526 -0.0006 18 7 3.6413 -0.6566 -0.0015 19 7 2.3122 -1.0987 -0.0005 20 6 1.8864 -2.4347 -0.0055 21 6 0.9108 -2.8573 0.8868 22 6 0.4894 -4.1727 0.8761 23 6 1.0452 -5.0721 -0.0153 24 6 2.0213 -4.6576 -0.9022 25 6 2.4444 -3.3405 -0.9006 26 9 3.3986 -2.9353 -1.7669 27 1 -0.3633 0.0845 1.0242 28 1 -0.3633 0.8447 -0.5854 29 1 -0.3633 -0.9293 -0.4389 30 1 0.9369 2.6433 0.0761 31 1 3.6123 3.4115 0.6722 32 1 3.3472 3.4686 -1.0870 33 1 4.2015 6.1152 -2.8674 34 1 3.6396 5.5657 1.5794 35 1 2.6856 6.9251 0.7776 36 1 0.5179 5.7260 1.3229 37 1 1.4713 4.3662 2.1249 38 1 4.5162 1.2848 -0.0004 39 1 0.4789 -2.1572 1.5865 40 1 -0.2729 -4.5002 1.5676 41 1 0.7164 -6.1008 -0.0181 42 1 2.4538 -5.3625 -1.5969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594706720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:13 Heat of formation + Delta-G solvation = 90.607582 kcal Electronic energy + Delta-G solvation = -25512.010526 eV Core-core repulsion = 21795.163770 eV Total energy + Delta-G solvation = -3716.846756 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.89969 -41.12317 -39.00643 -37.04558 -34.34452 -33.14892 -32.03993 -31.20124 -30.84260 -28.44545 -26.77470 -25.61837 -24.41961 -23.37656 -23.01624 -21.18939 -20.61715 -19.56185 -19.07817 -17.76496 -17.04439 -16.58510 -16.27510 -15.73743 -15.47001 -15.01971 -14.78022 -14.62557 -14.40137 -13.98339 -13.94608 -13.54176 -13.28725 -12.90765 -12.74764 -12.63001 -12.34056 -12.27456 -12.06330 -11.77399 -11.57498 -11.44269 -10.98991 -10.93556 -10.54834 -10.52037 -10.26860 -9.96841 -9.50583 -9.34869 -9.14253 -8.85585 -8.58123 -8.51728 -8.19591 -6.41717 -6.07529 -4.13234 0.68877 0.86737 2.14524 2.54744 3.26707 3.26822 3.33129 3.35095 3.37629 3.97826 4.31242 4.37529 4.45556 4.59141 4.89257 4.90494 4.95371 5.15576 5.19051 5.31760 5.41344 5.43262 5.66748 5.71426 5.74485 5.83357 5.91088 6.00589 6.04016 6.05198 6.25121 6.34687 6.45253 6.46921 6.66384 6.67196 6.72241 6.96146 7.06185 7.37640 7.42267 7.53037 7.85150 7.90344 8.21013 8.37232 8.65645 8.87500 9.51453 11.00058 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.003181 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.613655 B = 8800.859245 C = 9215.822059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.034 4.034 3 C 0.104 3.896 4 N -0.722 5.722 5 C 0.177 3.823 6 C 0.040 3.960 7 C -0.496 4.496 8 H 0.059 0.941 9 C 0.073 3.927 10 N -0.877 5.877 11 Si 0.889 3.111 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 C -0.167 4.167 16 C -0.207 4.207 17 C 0.027 3.973 18 N -0.268 5.268 19 N -0.337 5.337 20 C 0.145 3.855 21 C -0.100 4.100 22 C -0.114 4.114 23 C -0.100 4.100 24 C -0.142 4.142 25 C 0.102 3.898 26 F -0.124 7.124 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.397 0.603 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.262 0.738 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.186 0.814 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 -19.105 5.842 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.159 4.159 3 C -0.006 4.006 4 N -0.356 5.356 5 C 0.053 3.947 6 C 0.039 3.961 7 C -0.533 4.533 8 H 0.077 0.923 9 C -0.130 4.130 10 N -0.513 5.513 11 Si 0.717 3.283 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.206 4.206 16 C -0.244 4.244 17 C -0.163 4.163 18 N -0.086 5.086 19 N -0.121 5.121 20 C 0.051 3.949 21 C -0.121 4.121 22 C -0.133 4.133 23 C -0.119 4.119 24 C -0.161 4.161 25 C 0.081 3.919 26 F -0.102 7.102 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.231 0.769 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.203 0.797 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.953 -20.020 5.644 21.382 hybrid contribution -0.765 1.377 -1.073 1.906 sum -5.719 -18.643 4.571 20.029 Atomic orbital electron populations 1.20188 0.87667 1.02984 1.02225 1.20055 0.93686 0.85231 1.16882 1.17578 0.91595 0.86260 1.05158 1.44226 1.09184 0.99398 1.82789 1.20856 0.89209 0.84805 0.99793 1.18992 0.97128 0.91415 0.88560 1.20434 0.92781 1.43220 0.96901 0.92279 1.24951 0.94770 0.94965 0.98364 1.69950 1.03219 1.45126 1.33041 0.86637 0.79322 0.78646 0.83713 1.20732 1.21142 1.19812 1.22705 0.93987 0.98734 1.05138 1.22855 0.96274 1.03737 1.01549 1.23768 0.97364 0.91667 1.03550 1.77372 0.96123 1.12284 1.22854 1.44899 1.04013 1.01896 1.61337 1.17354 0.98741 0.81723 0.97080 1.21083 0.97314 0.96810 0.96911 1.21058 1.00456 0.92235 0.99528 1.21046 0.95696 1.00235 0.94891 1.21105 0.99641 0.93630 1.01748 1.17699 0.91002 0.93149 0.90096 1.91561 1.60882 1.91043 1.66724 0.91374 0.90245 0.91916 0.76895 0.95610 0.91331 0.92863 0.91760 0.90154 0.90618 0.91405 0.79718 0.84333 0.84585 0.84637 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 8.95 36.01 0.32 -0.59 16 2 C -0.03 -0.56 6.82 -81.55 -0.56 -1.11 16 3 C 0.10 1.92 6.91 -83.89 -0.58 1.34 16 4 N -0.72 -13.91 5.70 -58.79 -0.34 -14.25 16 5 C 0.18 3.87 5.48 -4.04 -0.02 3.85 16 6 C 0.04 0.92 1.31 -155.66 -0.20 0.72 16 7 C -0.50 -12.89 8.83 -34.44 -0.30 -13.20 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.07 1.94 5.24 -17.82 -0.09 1.85 16 10 N -0.88 -24.08 12.58 55.43 0.70 -23.38 16 11 Si 0.89 20.77 29.55 -169.99 -5.02 15.75 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 C -0.17 -3.73 9.88 -26.73 -0.26 -4.00 16 16 C -0.21 -4.24 9.79 -26.73 -0.26 -4.50 16 17 C 0.03 0.49 11.32 -17.18 -0.19 0.30 16 18 N -0.27 -5.00 12.03 30.72 0.37 -4.63 16 19 N -0.34 -5.67 3.59 -6.64 -0.02 -5.69 16 20 C 0.14 2.03 5.93 -83.51 -0.50 1.53 16 21 C -0.10 -1.05 8.54 -39.41 -0.34 -1.38 16 22 C -0.11 -0.87 10.04 -39.60 -0.40 -1.27 16 23 C -0.10 -0.73 10.04 -39.56 -0.40 -1.13 16 24 C -0.14 -1.36 10.02 -39.54 -0.40 -1.75 16 25 C 0.10 1.38 7.28 -39.25 -0.29 1.10 16 26 F -0.12 -2.00 16.66 2.25 0.04 -1.97 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.02 7.87 -51.92 -0.41 0.61 16 29 H 0.06 0.71 7.20 -51.92 -0.37 0.33 16 30 H 0.40 7.36 8.01 -40.82 -0.33 7.03 16 31 H 0.03 0.54 7.88 -51.93 -0.41 0.14 16 32 H 0.07 1.72 7.25 -51.93 -0.38 1.34 16 33 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 34 H 0.06 1.36 8.06 -51.93 -0.42 0.94 16 35 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.19 3.13 7.91 -52.49 -0.42 2.72 16 39 H 0.14 1.31 7.53 -52.49 -0.40 0.92 16 40 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -29.96 362.40 -8.91 -38.87 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.63 Total: 8.08 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -4.47 Total: -18.25 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.71 Total: -47.95 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.96 -8.91 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594706720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.477 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds