Wall clock time and date at job start Tue Mar 31 2020 10:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35717 * 126.24190 * 2 1 4 4 N 1.40767 * 126.06221 * 0.04378 * 3 2 1 5 5 C 1.46495 * 120.00116 * 185.09175 * 4 3 2 6 6 C 1.53002 * 109.47301 * 184.98294 * 5 4 3 7 7 C 1.50701 * 115.55122 * 275.78439 * 6 5 4 8 8 H 1.08001 * 120.00534 * 114.57901 * 7 6 5 9 9 C 1.37876 * 119.99529 * 294.58174 * 7 6 5 10 10 N 1.31519 * 120.00386 * 352.81210 * 9 7 6 11 11 Si 1.86805 * 119.99926 * 172.81504 * 9 7 6 12 12 H 1.48503 * 109.47183 * 89.99854 * 11 9 7 13 13 H 1.48496 * 109.47032 * 209.99529 * 11 9 7 14 14 H 1.48497 * 109.47105 * 330.00192 * 11 9 7 15 15 C 1.52997 * 117.49912 * 130.06922 * 6 5 4 16 16 C 1.52998 * 60.00214 * 252.51421 * 15 6 5 17 17 C 1.40271 * 107.87722 * 180.02562 * 3 2 1 18 18 N 1.30921 * 108.39627 * 0.02562 * 17 3 2 19 19 N 1.36222 * 126.23733 * 180.02562 * 2 1 3 20 20 C 1.40225 * 126.08196 * 0.22367 * 19 2 1 21 21 C 1.38800 * 120.07979 * 311.71400 * 20 19 2 22 22 C 1.38130 * 119.95622 * 179.74275 * 21 20 19 23 23 C 1.38291 * 120.11514 * 0.50637 * 22 21 20 24 24 C 1.38245 * 120.15349 * 359.77010 * 23 22 21 25 25 C 1.38337 * 120.04229 * 359.97288 * 24 23 22 26 26 F 1.35104 * 120.05689 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.46989 * 274.71733 * 1 2 3 28 28 H 1.09007 * 109.46933 * 34.72300 * 1 2 3 29 29 H 1.09007 * 109.46944 * 154.71916 * 1 2 3 30 30 H 0.97006 * 119.99741 * 5.08838 * 4 3 2 31 31 H 1.08997 * 109.47366 * 304.98658 * 5 4 3 32 32 H 1.09001 * 109.46939 * 64.98528 * 5 4 3 33 33 H 0.96994 * 119.99936 * 185.01235 * 10 9 7 34 34 H 1.08994 * 117.49937 * 0.02562 * 15 6 5 35 35 H 1.09003 * 117.49473 * 145.02407 * 15 6 5 36 36 H 1.09007 * 117.49832 * 252.51608 * 16 15 6 37 37 H 1.09000 * 117.52341 * 107.48187 * 16 15 6 38 38 H 1.07999 * 125.80721 * 180.02562 * 17 3 2 39 39 H 1.07995 * 120.01880 * 359.97438 * 21 20 19 40 40 H 1.08008 * 119.94211 * 180.27436 * 22 21 20 41 41 H 1.07999 * 119.92156 * 179.74351 * 23 22 21 42 42 H 1.08003 * 119.98288 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3093 1.0946 0.0000 4 7 1.8815 2.4357 0.0009 5 6 2.8626 3.5177 -0.1118 6 6 2.1548 4.8657 0.0386 7 6 1.5329 5.4172 -1.2185 8 1 0.4605 5.5247 -1.2883 9 6 2.3330 5.7845 -2.2796 10 7 3.6414 5.7879 -2.1463 11 14 1.5587 6.2774 -3.9065 12 1 1.3066 7.7408 -3.9116 13 1 2.4796 5.9299 -5.0184 14 1 0.2742 5.5533 -4.0829 15 6 2.7461 5.8671 1.0328 16 6 1.4386 5.1438 1.3617 17 6 3.6406 0.6526 -0.0006 18 7 3.6413 -0.6566 -0.0015 19 7 2.3122 -1.0987 -0.0005 20 6 1.8864 -2.4347 -0.0055 21 6 0.9108 -2.8573 0.8868 22 6 0.4894 -4.1727 0.8761 23 6 1.0452 -5.0721 -0.0153 24 6 2.0213 -4.6576 -0.9022 25 6 2.4444 -3.3405 -0.9006 26 9 3.3986 -2.9353 -1.7669 27 1 -0.3633 0.0845 1.0242 28 1 -0.3633 0.8447 -0.5854 29 1 -0.3633 -0.9293 -0.4389 30 1 0.9369 2.6433 0.0761 31 1 3.6123 3.4115 0.6722 32 1 3.3472 3.4686 -1.0870 33 1 4.2015 6.1152 -2.8674 34 1 3.6396 5.5657 1.5794 35 1 2.6856 6.9251 0.7776 36 1 0.5179 5.7260 1.3229 37 1 1.4713 4.3662 2.1249 38 1 4.5162 1.2848 -0.0004 39 1 0.4789 -2.1572 1.5865 40 1 -0.2729 -4.5002 1.5676 41 1 0.7164 -6.1008 -0.0181 42 1 2.4538 -5.3625 -1.5969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594706720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:12 Heat of formation + Delta-G solvation = 74.782585 kcal Electronic energy + Delta-G solvation = -25512.696749 eV Core-core repulsion = 21795.163770 eV Total energy + Delta-G solvation = -3717.532979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.97143 -42.38619 -39.85262 -38.76375 -35.72986 -34.32850 -34.02922 -32.35720 -31.62738 -29.53248 -28.19618 -27.44010 -26.00350 -24.36637 -23.87089 -22.90993 -21.82481 -20.93252 -20.75421 -18.78285 -18.19288 -17.99710 -17.52423 -16.95436 -16.67783 -16.58177 -16.11301 -15.95805 -15.64954 -15.35741 -15.09487 -14.94018 -14.53982 -14.23614 -13.93916 -13.72263 -13.64214 -13.40986 -13.28673 -13.03080 -12.90678 -12.86140 -12.81344 -12.37931 -12.27454 -12.01641 -11.84689 -11.34534 -11.23759 -10.83899 -10.55853 -10.44799 -10.03509 -9.95749 -9.55080 -8.10237 -7.83703 -6.19115 -0.18628 0.11214 0.92228 1.39649 1.40740 1.43632 1.51148 1.93367 2.42278 2.50082 2.84708 3.12867 3.17825 3.61564 3.66194 3.78414 3.88920 4.02572 4.18028 4.27145 4.29823 4.31381 4.46980 4.60341 4.62224 4.71976 4.72712 4.89456 4.96393 4.97990 5.00486 5.04103 5.08540 5.09253 5.21475 5.28069 5.35178 5.44356 5.63527 5.65354 5.73392 5.86186 6.27377 6.41171 6.55154 6.69808 6.84495 7.25287 7.47566 8.97697 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.003181 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.613655 B = 8800.859245 C = 9215.822059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.013 4.013 3 C 0.069 3.931 4 N -0.722 5.722 5 C 0.199 3.801 6 C 0.015 3.985 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.028 3.972 10 N -0.905 5.905 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.269 1.269 15 C -0.175 4.175 16 C -0.175 4.175 17 C 0.007 3.993 18 N -0.298 5.298 19 N -0.332 5.332 20 C 0.099 3.901 21 C -0.100 4.100 22 C -0.098 4.098 23 C -0.080 4.080 24 C -0.140 4.140 25 C 0.065 3.935 26 F -0.152 7.152 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.400 0.600 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.259 0.741 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.184 0.816 39 H 0.149 0.851 40 H 0.178 0.822 41 H 0.179 0.821 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 -22.050 7.063 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.139 4.139 3 C -0.040 4.040 4 N -0.358 5.358 5 C 0.074 3.926 6 C 0.015 3.985 7 C -0.543 4.543 8 H 0.073 0.927 9 C -0.173 4.173 10 N -0.542 5.542 11 Si 0.770 3.230 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.193 1.193 15 C -0.214 4.214 16 C -0.212 4.212 17 C -0.181 4.181 18 N -0.118 5.118 19 N -0.116 5.116 20 C 0.007 3.993 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.098 4.098 24 C -0.159 4.159 25 C 0.044 3.956 26 F -0.131 7.131 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.235 0.765 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.201 0.799 39 H 0.166 0.834 40 H 0.195 0.805 41 H 0.197 0.803 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.056 -23.016 6.874 25.335 hybrid contribution 0.083 2.018 -1.400 2.458 sum -7.973 -20.997 5.474 23.118 Atomic orbital electron populations 1.20347 0.84683 1.03791 1.04069 1.20709 0.95405 0.84616 1.13208 1.17723 0.91959 0.86367 1.07934 1.43872 1.08589 0.99174 1.84140 1.20353 0.89475 0.85263 0.97491 1.19016 0.98713 0.91994 0.88823 1.20734 0.92681 1.42667 0.98175 0.92657 1.25599 0.95164 0.95413 1.01109 1.70060 1.04215 1.46311 1.33659 0.85770 0.78484 0.78480 0.80231 1.20151 1.21630 1.19309 1.22658 0.95642 0.97690 1.05394 1.22832 0.95332 1.03086 0.99922 1.23815 0.97819 0.91924 1.04580 1.77299 0.97970 1.12267 1.24270 1.45200 1.03272 1.03310 1.59814 1.17899 1.01198 0.80631 0.99581 1.21331 0.96072 0.98479 0.96109 1.21580 1.00099 0.90643 0.99299 1.21612 0.93400 1.02136 0.92658 1.21454 0.99867 0.92089 1.02466 1.18245 0.91633 0.94931 0.90820 1.91482 1.62248 1.91545 1.67811 0.88650 0.90421 0.90218 0.76513 0.95559 0.95440 0.93191 0.90920 0.91824 0.90016 0.89272 0.79932 0.83375 0.80452 0.80317 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 8.95 71.24 0.64 -1.00 16 2 C -0.01 -0.42 6.82 41.29 0.28 -0.14 16 3 C 0.07 2.61 6.91 37.61 0.26 2.87 16 4 N -0.72 -28.36 5.70 -339.92 -1.94 -30.30 16 5 C 0.20 9.04 5.48 86.38 0.47 9.51 16 6 C 0.02 0.72 1.31 -52.93 -0.07 0.65 16 7 C -0.50 -26.62 8.83 25.60 0.23 -26.39 16 8 H 0.06 2.88 7.82 -2.91 -0.02 2.86 16 9 C 0.03 1.50 5.24 84.65 0.44 1.95 16 10 N -0.90 -51.35 12.58 21.45 0.27 -51.08 16 11 Si 0.94 43.34 29.55 68.60 2.03 45.37 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 C -0.18 -7.88 9.88 30.59 0.30 -7.58 16 16 C -0.17 -6.96 9.79 30.59 0.30 -6.66 16 17 C 0.01 0.27 11.32 85.32 0.97 1.24 16 18 N -0.30 -11.70 12.03 -56.71 -0.68 -12.39 16 19 N -0.33 -11.28 3.59 -174.91 -0.63 -11.91 16 20 C 0.10 2.68 5.93 38.12 0.23 2.91 16 21 C -0.10 -1.77 8.54 22.38 0.19 -1.57 16 22 C -0.10 -0.98 10.04 22.26 0.22 -0.76 16 23 C -0.08 -0.76 10.04 22.28 0.22 -0.54 16 24 C -0.14 -2.30 10.02 22.30 0.22 -2.08 16 25 C 0.06 1.73 7.28 22.48 0.16 1.89 16 26 F -0.15 -5.17 16.66 44.97 0.75 -4.42 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.86 7.87 -2.38 -0.02 1.84 16 29 H 0.08 1.58 7.20 -2.38 -0.02 1.56 16 30 H 0.40 14.78 8.01 -92.70 -0.74 14.03 16 31 H 0.03 1.16 7.88 -2.39 -0.02 1.14 16 32 H 0.03 1.46 7.25 -2.39 -0.02 1.44 16 33 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 34 H 0.07 3.09 8.06 -2.39 -0.02 3.07 16 35 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 37 H 0.09 3.18 8.14 -2.39 -0.02 3.17 16 38 H 0.18 6.85 7.91 -2.91 -0.02 6.83 16 39 H 0.15 2.29 7.53 -2.91 -0.02 2.26 16 40 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 41 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 42 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.20 362.40 5.17 -64.03 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.30 Total: 26.39 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 5.07 Total: -25.70 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -2.98 Total: -105.68 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.75 Total: -4.42 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -69.20 5.17 -64.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594706720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.816 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds