Wall clock time and date at job start Tue Mar 31 2020 11:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47305 * 2 1 4 4 H 1.09004 * 109.47221 * 303.75724 * 3 2 1 5 5 C 1.50703 * 109.47498 * 183.75805 * 3 2 1 6 6 H 1.07998 * 119.99738 * 245.99057 * 5 3 2 7 7 C 1.37875 * 120.00077 * 65.98234 * 5 3 2 8 8 N 1.31508 * 120.00010 * 188.42539 * 7 5 3 9 9 Si 1.86799 * 119.99930 * 8.43033 * 7 5 3 10 10 H 1.48499 * 109.47163 * 269.99691 * 9 7 5 11 11 H 1.48504 * 109.47236 * 29.99855 * 9 7 5 12 12 H 1.48499 * 109.47367 * 149.99582 * 9 7 5 13 13 N 1.46503 * 109.47008 * 63.75549 * 3 2 1 14 14 C 1.34777 * 119.99957 * 274.99878 * 13 3 2 15 15 O 1.21566 * 119.99949 * 0.02562 * 14 13 3 16 16 C 1.47698 * 119.99970 * 180.02562 * 14 13 3 17 17 C 1.39707 * 120.07899 * 0.02562 * 16 14 13 18 18 C 1.37721 * 119.92095 * 180.02562 * 17 16 14 19 19 C 1.39035 * 120.07917 * 359.97438 * 18 17 16 20 20 N 1.39977 * 119.92280 * 179.97438 * 19 18 17 21 21 C 1.35139 * 127.39147 * 353.95893 * 20 19 18 22 22 N 1.30709 * 107.26381 * 179.97438 * 21 20 19 23 23 N 1.28421 * 110.65996 * 359.97438 * 22 21 20 24 24 N 1.28952 * 110.21170 * 359.74948 * 23 22 21 25 25 C 1.38993 * 120.16131 * 359.97438 * 19 18 17 26 26 C 1.50701 * 119.96234 * 179.97438 * 25 19 18 27 27 C 1.37765 * 120.07975 * 359.72144 * 25 19 18 28 28 H 1.08993 * 109.46923 * 299.99711 * 1 2 3 29 29 H 1.09003 * 109.47170 * 60.00160 * 1 2 3 30 30 H 1.09001 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46962 * 239.99837 * 2 1 3 32 32 H 1.08995 * 109.47343 * 120.00167 * 2 1 3 33 33 H 0.97002 * 120.00535 * 354.91628 * 8 7 5 34 34 H 0.97004 * 119.99783 * 95.00415 * 13 3 2 35 35 H 1.08001 * 120.04233 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.96548 * 179.97438 * 18 17 16 37 37 H 1.07999 * 126.36688 * 359.97438 * 21 20 19 38 38 H 1.08999 * 109.47397 * 81.58666 * 26 25 19 39 39 H 1.09003 * 109.47460 * 201.59253 * 26 25 19 40 40 H 1.09003 * 109.47131 * 321.58775 * 26 25 19 41 41 H 1.08002 * 120.04659 * 180.29801 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6228 1.9754 -0.8544 5 6 3.5442 1.4435 -0.0931 6 1 4.1361 1.8057 0.7344 7 6 4.1645 0.9819 -1.2346 8 7 5.4702 0.8266 -1.2564 9 14 3.1504 0.5774 -2.7503 10 1 2.7325 -0.8468 -2.7006 11 1 1.9462 1.4457 -2.7864 12 1 3.9662 0.8116 -3.9688 13 7 1.6270 2.1064 1.2389 14 6 0.4076 2.6741 1.3249 15 8 -0.3496 2.6347 0.3747 16 6 -0.0086 3.3440 2.5737 17 6 0.8605 3.3907 3.6665 18 6 0.4689 4.0157 4.8296 19 6 -0.7896 4.6003 4.9167 20 7 -1.1845 5.2343 6.1006 21 6 -0.5170 5.2688 7.2751 22 7 -1.2396 5.9663 8.1116 23 7 -2.3178 6.3758 7.5468 24 7 -2.3575 5.9775 6.3210 25 6 -1.6566 4.5568 3.8312 26 6 -3.0198 5.1914 3.9308 27 6 -1.2692 3.9388 2.6625 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 6.0047 1.1057 -0.4966 34 1 2.2311 2.1375 1.9972 35 1 1.8381 2.9364 3.5997 36 1 1.1400 4.0518 5.6749 37 1 0.4363 4.8060 7.4837 38 1 -2.9352 6.2638 3.7547 39 1 -3.6809 4.7516 3.1840 40 1 -3.4295 5.0180 4.9259 41 1 -1.9414 3.9095 1.8177 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613038511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:18 Heat of formation + Delta-G solvation = 113.320367 kcal Electronic energy + Delta-G solvation = -25520.388958 eV Core-core repulsion = 21824.447064 eV Total energy + Delta-G solvation = -3695.941894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.60071 -40.46964 -38.90870 -35.65781 -35.21390 -33.69811 -32.65941 -32.32265 -31.63394 -30.47729 -27.71218 -27.34625 -25.47846 -23.86184 -23.22278 -22.38613 -21.79070 -20.72140 -19.78391 -18.78690 -18.19551 -17.06207 -16.91550 -16.68653 -16.08494 -15.31798 -14.96647 -14.80034 -14.33441 -14.11041 -13.99549 -13.77069 -13.54500 -13.16568 -12.87041 -12.74247 -12.63069 -12.60855 -12.44366 -12.09218 -11.97658 -11.58351 -11.52414 -11.22073 -11.01541 -10.84441 -10.82799 -10.56746 -9.91037 -9.86235 -9.50887 -9.34846 -9.02470 -8.94960 -8.60073 -8.26951 -6.65821 -4.34475 -0.19512 0.82016 1.05341 1.34738 1.87034 2.78730 3.29167 3.38646 3.51494 3.59747 3.64356 3.71165 3.80327 4.18092 4.32528 4.36355 4.45967 4.73846 4.83425 4.90427 4.94506 5.08959 5.09694 5.25848 5.42807 5.43684 5.66406 5.76599 5.88976 5.91605 5.96698 5.97819 6.02641 6.12736 6.36840 6.56669 6.64915 6.77191 6.88845 7.18019 7.21844 7.48958 7.99727 8.11065 8.25160 8.54508 8.75607 9.36230 10.74948 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.002871 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.255329 B = 9750.799944 C =10366.980587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.240 3.760 4 H 0.052 0.948 5 C -0.613 4.613 6 H 0.062 0.938 7 C 0.038 3.962 8 N -0.902 5.902 9 Si 1.046 2.954 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.286 1.286 13 N -0.691 5.691 14 C 0.540 3.460 15 O -0.539 6.539 16 C -0.103 4.103 17 C -0.073 4.073 18 C -0.120 4.120 19 C 0.131 3.869 20 N -0.319 5.319 21 C 0.224 3.776 22 N -0.330 5.330 23 N -0.043 5.043 24 N -0.073 5.073 25 C -0.071 4.071 26 C -0.118 4.118 27 C -0.047 4.047 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.269 0.731 34 H 0.392 0.608 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.240 0.760 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.952 5.524 13.587 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.137 3.863 4 H 0.069 0.931 5 C -0.651 4.651 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.535 5.535 9 Si 0.875 3.125 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.212 1.212 13 N -0.338 5.338 14 C 0.325 3.675 15 O -0.418 6.418 16 C -0.107 4.107 17 C -0.092 4.092 18 C -0.141 4.141 19 C 0.038 3.962 20 N -0.109 5.109 21 C -0.072 4.072 22 N -0.178 5.178 23 N -0.037 5.037 24 N -0.057 5.057 25 C -0.073 4.073 26 C -0.175 4.175 27 C -0.066 4.066 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.226 0.774 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.256 0.744 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.488 5.678 11.811 18.102 hybrid contribution 1.229 -0.007 1.650 2.058 sum -11.258 5.671 13.461 18.442 Atomic orbital electron populations 1.21904 0.97150 0.99153 1.02071 1.22249 0.93990 0.99710 1.01566 1.19328 0.95731 0.88484 0.82731 0.93058 1.22125 0.89407 1.49099 1.04446 0.91982 1.25688 0.97127 0.93275 1.00765 1.70838 1.05484 1.42294 1.34862 0.83963 0.75413 0.77331 0.75840 1.20589 1.19810 1.21227 1.46241 1.14502 1.54791 1.18287 1.18056 0.83013 0.79610 0.86800 1.90767 1.52740 1.60061 1.38262 1.20527 0.95181 0.99788 0.95212 1.21252 0.99778 0.96957 0.91210 1.20734 0.93560 0.99968 0.99852 1.17606 0.95358 0.99511 0.83762 1.49034 1.15780 1.35804 1.10278 1.27494 1.00705 0.97500 0.81551 1.74476 1.01382 1.14740 1.27238 1.78102 1.12176 1.13742 0.99712 1.82782 1.01363 1.09481 1.12107 1.19709 0.96820 0.99081 0.91693 1.21072 0.91504 1.00865 1.04026 1.21178 0.95373 0.93393 0.96657 0.93362 0.92709 0.94828 0.92038 0.92655 0.92070 0.77389 0.83721 0.84209 0.74420 0.90183 0.90842 0.89608 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.49 37.16 0.32 -2.40 16 2 C -0.14 -2.82 5.25 -26.73 -0.14 -2.96 16 3 C 0.24 5.32 1.83 -69.08 -0.13 5.19 16 4 H 0.05 1.26 5.95 -51.93 -0.31 0.95 16 5 C -0.61 -15.55 9.07 -34.44 -0.31 -15.87 16 6 H 0.06 1.63 7.95 -52.49 -0.42 1.22 16 7 C 0.04 1.02 5.41 -17.82 -0.10 0.92 16 8 N -0.90 -25.95 13.69 55.43 0.76 -25.19 16 9 Si 1.05 24.30 25.51 -169.99 -4.34 19.97 16 10 H -0.28 -6.15 6.75 56.52 0.38 -5.76 16 11 H -0.27 -6.11 6.36 56.52 0.36 -5.75 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.69 -12.42 4.96 -55.92 -0.28 -12.70 16 14 C 0.54 9.17 6.28 -12.40 -0.08 9.09 16 15 O -0.54 -10.77 13.47 5.31 0.07 -10.70 16 16 C -0.10 -1.31 5.87 -104.95 -0.62 -1.93 16 17 C -0.07 -0.70 9.53 -39.22 -0.37 -1.08 16 18 C -0.12 -0.93 9.47 -39.47 -0.37 -1.30 16 19 C 0.13 1.23 6.68 -83.56 -0.56 0.67 16 20 N -0.32 -3.06 3.82 -11.71 -0.04 -3.10 16 21 C 0.22 1.72 12.14 -90.11 -1.09 0.62 16 22 N -0.33 -3.58 12.15 29.65 0.36 -3.22 16 23 N -0.04 -0.53 13.39 60.35 0.81 0.28 16 24 N -0.07 -0.84 10.19 60.35 0.61 -0.22 16 25 C -0.07 -0.73 5.89 -104.51 -0.62 -1.34 16 26 C -0.12 -1.08 8.66 36.01 0.31 -0.77 16 27 C -0.05 -0.54 9.20 -39.22 -0.36 -0.90 16 28 H 0.05 0.88 5.67 -51.93 -0.29 0.58 16 29 H 0.05 1.07 7.77 -51.93 -0.40 0.67 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.33 4.69 -51.92 -0.24 1.09 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.27 7.64 8.72 -40.82 -0.36 7.28 16 34 H 0.39 6.04 6.55 -40.82 -0.27 5.78 16 35 H 0.15 1.19 6.40 -52.49 -0.34 0.86 16 36 H 0.14 0.56 6.89 -52.49 -0.36 0.20 16 37 H 0.24 0.54 7.21 -52.49 -0.38 0.16 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.58 8.02 -51.93 -0.42 0.16 16 40 H 0.09 0.85 5.92 -51.93 -0.31 0.54 16 41 H 0.15 1.76 7.63 -52.49 -0.40 1.36 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -31.98 334.98 -5.73 -37.72 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.62 Total: 4.17 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -4.12 Total: -12.05 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 2.22 Total: -44.16 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.34 Total: 19.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.98 -5.73 -37.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.039 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds