Wall clock time and date at job start Tue Mar 31 2020 11:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47305 * 2 1 4 4 H 1.09004 * 109.47221 * 303.75724 * 3 2 1 5 5 C 1.50703 * 109.47498 * 183.75805 * 3 2 1 6 6 H 1.07998 * 119.99738 * 245.99057 * 5 3 2 7 7 C 1.37875 * 120.00077 * 65.98234 * 5 3 2 8 8 N 1.31508 * 120.00010 * 188.42539 * 7 5 3 9 9 Si 1.86799 * 119.99930 * 8.43033 * 7 5 3 10 10 H 1.48499 * 109.47163 * 269.99691 * 9 7 5 11 11 H 1.48504 * 109.47236 * 29.99855 * 9 7 5 12 12 H 1.48499 * 109.47367 * 149.99582 * 9 7 5 13 13 N 1.46503 * 109.47008 * 63.75549 * 3 2 1 14 14 C 1.34777 * 119.99957 * 274.99878 * 13 3 2 15 15 O 1.21566 * 119.99949 * 0.02562 * 14 13 3 16 16 C 1.47698 * 119.99970 * 180.02562 * 14 13 3 17 17 C 1.39707 * 120.07899 * 0.02562 * 16 14 13 18 18 C 1.37721 * 119.92095 * 180.02562 * 17 16 14 19 19 C 1.39035 * 120.07917 * 359.97438 * 18 17 16 20 20 N 1.39977 * 119.92280 * 179.97438 * 19 18 17 21 21 C 1.35139 * 127.39147 * 353.95893 * 20 19 18 22 22 N 1.30709 * 107.26381 * 179.97438 * 21 20 19 23 23 N 1.28421 * 110.65996 * 359.97438 * 22 21 20 24 24 N 1.28952 * 110.21170 * 359.74948 * 23 22 21 25 25 C 1.38993 * 120.16131 * 359.97438 * 19 18 17 26 26 C 1.50701 * 119.96234 * 179.97438 * 25 19 18 27 27 C 1.37765 * 120.07975 * 359.72144 * 25 19 18 28 28 H 1.08993 * 109.46923 * 299.99711 * 1 2 3 29 29 H 1.09003 * 109.47170 * 60.00160 * 1 2 3 30 30 H 1.09001 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46962 * 239.99837 * 2 1 3 32 32 H 1.08995 * 109.47343 * 120.00167 * 2 1 3 33 33 H 0.97002 * 120.00535 * 354.91628 * 8 7 5 34 34 H 0.97004 * 119.99783 * 95.00415 * 13 3 2 35 35 H 1.08001 * 120.04233 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.96548 * 179.97438 * 18 17 16 37 37 H 1.07999 * 126.36688 * 359.97438 * 21 20 19 38 38 H 1.08999 * 109.47397 * 81.58666 * 26 25 19 39 39 H 1.09003 * 109.47460 * 201.59253 * 26 25 19 40 40 H 1.09003 * 109.47131 * 321.58775 * 26 25 19 41 41 H 1.08002 * 120.04659 * 180.29801 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6228 1.9754 -0.8544 5 6 3.5442 1.4435 -0.0931 6 1 4.1361 1.8057 0.7344 7 6 4.1645 0.9819 -1.2346 8 7 5.4702 0.8266 -1.2564 9 14 3.1504 0.5774 -2.7503 10 1 2.7325 -0.8468 -2.7006 11 1 1.9462 1.4457 -2.7864 12 1 3.9662 0.8116 -3.9688 13 7 1.6270 2.1064 1.2389 14 6 0.4076 2.6741 1.3249 15 8 -0.3496 2.6347 0.3747 16 6 -0.0086 3.3440 2.5737 17 6 0.8605 3.3907 3.6665 18 6 0.4689 4.0157 4.8296 19 6 -0.7896 4.6003 4.9167 20 7 -1.1845 5.2343 6.1006 21 6 -0.5170 5.2688 7.2751 22 7 -1.2396 5.9663 8.1116 23 7 -2.3178 6.3758 7.5468 24 7 -2.3575 5.9775 6.3210 25 6 -1.6566 4.5568 3.8312 26 6 -3.0198 5.1914 3.9308 27 6 -1.2692 3.9388 2.6625 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 6.0047 1.1057 -0.4966 34 1 2.2311 2.1375 1.9972 35 1 1.8381 2.9364 3.5997 36 1 1.1400 4.0518 5.6749 37 1 0.4363 4.8060 7.4837 38 1 -2.9352 6.2638 3.7547 39 1 -3.6809 4.7516 3.1840 40 1 -3.4295 5.0180 4.9259 41 1 -1.9414 3.9095 1.8177 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:17 Heat of formation + Delta-G solvation = 92.408226 kcal Electronic energy + Delta-G solvation = -25521.295776 eV Core-core repulsion = 21824.447064 eV Total energy + Delta-G solvation = -3696.848713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.34646 -41.49985 -40.07870 -37.15575 -36.19323 -34.68145 -34.25422 -33.38497 -32.90721 -31.40637 -29.23350 -28.29748 -26.41936 -24.62691 -24.42463 -23.90354 -22.56525 -22.10397 -21.23733 -19.93954 -19.53061 -18.32767 -17.81902 -17.49371 -17.26513 -16.60558 -16.13848 -15.84503 -15.46638 -15.09374 -15.06095 -14.69627 -14.59050 -14.50876 -14.44575 -14.14602 -13.91079 -13.66154 -13.55868 -13.42062 -12.91457 -12.73082 -12.52625 -12.47506 -12.28907 -12.26304 -11.96499 -11.71018 -11.59811 -11.53492 -11.01791 -10.86743 -10.63244 -10.11141 -9.93366 -9.69131 -8.76726 -6.45437 -0.97535 0.07627 0.23780 0.65077 1.14361 1.42741 1.51867 1.68255 1.78526 2.32704 2.40901 2.65114 2.95717 3.04334 3.26765 3.50757 3.64619 3.70710 3.79506 4.00740 4.11415 4.23060 4.30660 4.33884 4.38846 4.49612 4.56983 4.68083 4.70131 4.84200 4.90824 5.02799 5.08253 5.14014 5.17856 5.20113 5.26254 5.29842 5.54091 5.58518 5.63133 5.66890 6.01847 6.52990 6.78280 7.24404 7.27026 7.37581 8.63315 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.002871 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.255329 B = 9750.799944 C =10366.980587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 C 0.245 3.755 4 H 0.027 0.973 5 C -0.603 4.603 6 H 0.046 0.954 7 C -0.007 4.007 8 N -0.935 5.935 9 Si 1.074 2.926 10 H -0.258 1.258 11 H -0.265 1.265 12 H -0.289 1.289 13 N -0.692 5.692 14 C 0.542 3.458 15 O -0.575 6.575 16 C -0.124 4.124 17 C -0.066 4.066 18 C -0.100 4.100 19 C 0.135 3.865 20 N -0.325 5.325 21 C 0.245 3.755 22 N -0.356 5.356 23 N -0.065 5.065 24 N -0.090 5.090 25 C -0.078 4.078 26 C -0.114 4.114 27 C -0.051 4.051 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.259 0.741 34 H 0.405 0.595 35 H 0.161 0.839 36 H 0.190 0.810 37 H 0.295 0.705 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.158 5.202 15.565 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.141 3.859 4 H 0.045 0.955 5 C -0.641 4.641 6 H 0.064 0.936 7 C -0.208 4.208 8 N -0.571 5.571 9 Si 0.898 3.102 10 H -0.183 1.183 11 H -0.190 1.190 12 H -0.215 1.215 13 N -0.341 5.341 14 C 0.329 3.671 15 O -0.456 6.456 16 C -0.128 4.128 17 C -0.085 4.085 18 C -0.120 4.120 19 C 0.042 3.958 20 N -0.115 5.115 21 C -0.050 4.050 22 N -0.205 5.205 23 N -0.060 5.060 24 N -0.075 5.075 25 C -0.081 4.081 26 C -0.171 4.171 27 C -0.071 4.071 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.241 0.759 35 H 0.179 0.821 36 H 0.207 0.793 37 H 0.310 0.690 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.708 5.365 13.835 19.536 hybrid contribution 1.291 0.179 1.179 1.758 sum -11.416 5.545 15.014 19.660 Atomic orbital electron populations 1.21784 0.95422 1.00551 1.01487 1.22152 0.95463 0.98259 1.01428 1.18962 0.93371 0.89686 0.83911 0.95531 1.22334 0.91290 1.47081 1.03390 0.93566 1.26718 0.97232 0.93459 1.03342 1.70932 1.06486 1.44863 1.34838 0.83597 0.74621 0.78618 0.73355 1.18335 1.19021 1.21514 1.45999 1.15505 1.55199 1.17410 1.18595 0.81930 0.78671 0.87857 1.90742 1.53567 1.61254 1.40049 1.20178 0.96514 1.01683 0.94379 1.21429 0.99761 0.96606 0.90735 1.21144 0.93100 0.97429 1.00373 1.17784 0.95764 0.98911 0.83362 1.49054 1.15681 1.35908 1.10863 1.28549 1.01267 0.95350 0.79854 1.74423 1.01633 1.16018 1.28400 1.78104 1.13209 1.14539 1.00165 1.82768 1.02592 1.10206 1.11966 1.19753 0.97452 0.99163 0.91700 1.21037 0.91388 1.00775 1.03924 1.21067 0.95056 0.93915 0.97013 0.93200 0.94090 0.92343 0.93052 0.91890 0.93138 0.75904 0.82107 0.79307 0.69036 0.90331 0.90054 0.90152 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 8.49 71.98 0.61 -4.22 16 2 C -0.13 -5.39 5.25 30.59 0.16 -5.23 16 3 C 0.25 10.76 1.83 44.24 0.08 10.84 16 4 H 0.03 1.32 5.95 -2.39 -0.01 1.31 16 5 C -0.60 -30.71 9.07 25.60 0.23 -30.47 16 6 H 0.05 2.45 7.95 -2.91 -0.02 2.43 16 7 C -0.01 -0.39 5.41 84.66 0.46 0.06 16 8 N -0.94 -54.70 13.69 21.45 0.29 -54.40 16 9 Si 1.07 48.99 25.51 68.60 1.75 50.74 16 10 H -0.26 -10.82 6.75 99.48 0.67 -10.15 16 11 H -0.27 -11.67 6.36 99.48 0.63 -11.04 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 13 N -0.69 -24.28 4.96 -449.12 -2.23 -26.50 16 14 C 0.54 18.04 6.28 86.74 0.54 18.58 16 15 O -0.57 -23.07 13.47 -3.92 -0.05 -23.13 16 16 C -0.12 -2.95 5.87 -20.08 -0.12 -3.07 16 17 C -0.07 -1.05 9.53 22.50 0.21 -0.84 16 18 C -0.10 -1.06 9.47 22.34 0.21 -0.85 16 19 C 0.13 2.09 6.68 38.21 0.26 2.34 16 20 N -0.33 -5.20 3.82 -190.95 -0.73 -5.93 16 21 C 0.25 2.71 12.14 180.17 2.19 4.90 16 22 N -0.36 -6.86 12.15 -60.10 -0.73 -7.59 16 23 N -0.07 -1.55 13.39 37.02 0.50 -1.05 16 24 N -0.09 -1.95 10.19 37.02 0.38 -1.58 16 25 C -0.08 -1.48 5.89 -19.79 -0.12 -1.60 16 26 C -0.11 -2.01 8.66 71.24 0.62 -1.40 16 27 C -0.05 -1.14 9.20 22.50 0.21 -0.93 16 28 H 0.05 1.75 5.67 -2.39 -0.01 1.74 16 29 H 0.04 1.56 7.77 -2.39 -0.02 1.54 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 2.16 4.69 -2.38 -0.01 2.14 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.26 15.08 8.72 -92.71 -0.81 14.28 16 34 H 0.40 11.86 6.55 -92.71 -0.61 11.25 16 35 H 0.16 2.03 6.40 -2.91 -0.02 2.01 16 36 H 0.19 0.12 6.89 -2.91 -0.02 0.10 16 37 H 0.29 -0.66 7.21 -2.91 -0.02 -0.68 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.25 8.02 -2.39 -0.02 1.23 16 40 H 0.08 1.52 5.92 -2.39 -0.01 1.51 16 41 H 0.14 3.35 7.63 -2.91 -0.02 3.33 16 Total: -1.00 -72.37 334.98 5.07 -67.30 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.34 Total: 14.02 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.55 Total: -11.88 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -2.52 Total: -97.06 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.75 Total: 50.74 kcal Total: -72.37 5.07 -67.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.710 kcal (2) G-P(sol) polarization free energy of solvation -72.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds