Wall clock time and date at job start Tue Mar 31 2020 11:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46988 * 2 1 4 4 N 1.46507 * 109.46869 * 119.99811 * 2 1 3 5 5 C 1.38274 * 119.99752 * 85.00303 * 4 2 1 6 6 N 1.32421 * 119.83057 * 354.54638 * 5 4 2 7 7 C 1.31852 * 121.78081 * 179.97438 * 6 5 4 8 8 C 1.38378 * 121.21666 * 0.02562 * 7 6 5 9 9 C 1.38337 * 119.50397 * 0.28315 * 8 7 6 10 10 C 1.39973 * 118.37073 * 359.45459 * 9 8 7 11 11 C 1.47410 * 120.61063 * 180.26741 * 10 9 8 12 12 O 1.21635 * 120.00124 * 185.69448 * 11 10 9 13 13 N 1.34779 * 119.99865 * 5.69362 * 11 10 9 14 14 C 1.40544 * 119.99588 * 180.02562 * 13 11 10 15 15 C 1.40659 * 126.08684 * 0.02562 * 14 13 11 16 16 N 1.30913 * 108.38729 * 180.02562 * 15 14 13 17 17 N 1.40065 * 108.40903 * 0.02562 * 16 15 14 18 18 C 1.37316 * 126.06556 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00094 * 179.97438 * 18 17 16 20 20 C 1.38986 * 120.00128 * 359.97438 * 18 17 16 21 21 N 1.31293 * 119.99855 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47256 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47287 * 119.99761 * 22 20 18 25 25 H 1.48504 * 109.47087 * 239.99558 * 22 20 18 26 26 C 1.35699 * 126.07902 * 179.71808 * 14 13 11 27 27 H 1.09002 * 109.46807 * 300.00047 * 1 2 3 28 28 H 1.08994 * 109.47057 * 60.00144 * 1 2 3 29 29 H 1.08997 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47143 * 239.99651 * 2 1 3 31 31 H 1.09007 * 109.46941 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47104 * 299.99827 * 3 2 1 33 33 H 1.09002 * 109.47385 * 60.00307 * 3 2 1 34 34 H 0.96998 * 119.99487 * 264.99749 * 4 2 1 35 35 H 1.07998 * 119.39034 * 180.02562 * 7 6 5 36 36 H 1.07990 * 120.24297 * 180.02562 * 8 7 6 37 37 H 1.08006 * 120.81254 * 179.69913 * 9 8 7 38 38 H 0.96999 * 120.00156 * 359.97438 * 13 11 10 39 39 H 1.07994 * 125.80872 * 0.02562 * 15 14 13 40 40 H 0.97000 * 119.99548 * 180.02562 * 21 20 18 41 41 H 1.08000 * 126.24676 * 359.95513 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1504 -2.0670 1.1944 6 7 1.7337 -2.7673 0.1506 7 6 1.8413 -4.0808 0.1079 8 6 2.3972 -4.7894 1.1585 9 6 2.8438 -4.1100 2.2778 10 6 2.7256 -2.7155 2.3005 11 6 3.1909 -1.9417 3.4658 12 8 2.9897 -0.7433 3.5197 13 7 3.8392 -2.5621 4.4714 14 6 4.2824 -1.8244 5.5825 15 6 4.1186 -0.4410 5.7773 16 7 4.6611 -0.1184 6.9242 17 7 5.1910 -1.2778 7.5046 18 6 5.8414 -1.3529 8.7116 19 1 6.2119 -2.3030 9.0671 20 6 6.0229 -0.2063 9.4758 21 7 5.5729 0.9489 9.0433 22 14 6.9083 -0.3084 11.1174 23 1 7.3145 -1.7136 11.3742 24 1 8.1142 0.5576 11.0842 25 1 5.9998 0.1494 12.1992 26 6 4.9392 -2.3210 6.6611 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.2490 -0.1822 1.9895 35 1 1.4891 -4.6133 -0.7631 36 1 2.4780 -5.8650 1.1067 37 1 3.2767 -4.6423 3.1119 38 1 3.9994 -3.5178 4.4285 39 1 3.6287 0.2393 5.0965 40 1 5.7000 1.7491 9.5765 41 1 5.2151 -3.3528 6.8214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746183469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:56 Heat of formation + Delta-G solvation = 70.178894 kcal Electronic energy + Delta-G solvation = -25429.944562 eV Core-core repulsion = 21732.131913 eV Total energy + Delta-G solvation = -3697.812649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.97305 -41.26579 -39.67900 -37.89379 -35.98727 -35.07582 -33.40108 -33.32011 -32.19996 -30.17401 -29.22338 -28.09547 -26.91015 -25.40339 -23.95109 -23.01288 -22.21288 -21.66260 -21.12064 -19.38397 -18.86609 -18.33265 -17.62541 -17.41007 -16.68092 -16.28910 -16.17189 -15.78734 -15.60653 -15.40633 -15.32866 -15.00780 -14.77882 -14.66999 -13.96711 -13.81188 -13.51216 -13.45126 -13.26648 -13.11020 -12.94144 -12.88313 -12.82859 -12.40518 -12.03073 -11.92256 -11.91030 -11.16887 -11.04410 -10.94149 -10.80304 -10.76974 -10.29061 -10.10303 -8.76565 -8.47338 -8.44238 -6.24150 -0.13072 0.57946 1.25859 1.40045 1.59038 1.64152 1.92923 2.02011 2.24350 2.40624 2.52574 2.91738 3.05019 3.10203 3.60706 3.82117 3.95610 3.98603 4.16805 4.20928 4.34789 4.41225 4.45356 4.57571 4.71532 4.72208 4.84715 4.90445 4.99963 5.00518 5.03033 5.10582 5.22344 5.27841 5.30219 5.34888 5.42550 5.69087 5.95403 6.28788 6.33908 6.49605 6.68968 6.74039 7.20076 7.41693 7.47012 7.67734 8.52235 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.002951 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.217709 B = 9486.975102 C =10664.833715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 C -0.157 4.157 4 N -0.710 5.710 5 C 0.435 3.565 6 N -0.562 5.562 7 C 0.174 3.826 8 C -0.239 4.239 9 C 0.002 3.998 10 C -0.284 4.284 11 C 0.556 3.444 12 O -0.578 6.578 13 N -0.607 5.607 14 C -0.045 4.045 15 C -0.057 4.057 16 N -0.310 5.310 17 N -0.168 5.168 18 C -0.353 4.353 19 H 0.142 0.858 20 C -0.007 4.007 21 N -0.825 5.825 22 Si 1.019 2.981 23 H -0.240 1.240 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.079 4.079 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.416 0.584 35 H 0.194 0.806 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.418 0.582 39 H 0.169 0.831 40 H 0.276 0.724 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.898 -11.913 -16.252 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 C -0.215 4.215 4 N -0.351 5.351 5 C 0.196 3.804 6 N -0.281 5.281 7 C 0.013 3.987 8 C -0.261 4.261 9 C -0.024 4.024 10 C -0.295 4.295 11 C 0.347 3.653 12 O -0.461 6.461 13 N -0.250 5.250 14 C -0.152 4.152 15 C -0.232 4.232 16 N -0.142 5.142 17 N 0.063 4.937 18 C -0.484 4.484 19 H 0.159 0.841 20 C -0.219 4.219 21 N -0.453 5.453 22 Si 0.838 3.162 23 H -0.163 1.163 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.230 4.230 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.265 0.735 35 H 0.211 0.789 36 H 0.191 0.809 37 H 0.176 0.824 38 H 0.256 0.744 39 H 0.186 0.814 40 H 0.086 0.914 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.206 -9.286 -16.139 19.627 hybrid contribution 0.579 -0.795 1.150 1.514 sum -5.627 -10.081 -14.989 18.919 Atomic orbital electron populations 1.22107 0.94938 1.01841 1.02200 1.21037 0.94566 0.92961 0.87961 1.22057 1.01189 0.94814 1.03446 1.45972 1.67835 1.02895 1.18359 1.18530 0.87244 0.86258 0.88349 1.67447 1.24662 1.10328 1.25664 1.23386 0.89117 0.87916 0.98245 1.22102 1.06279 1.03100 0.94613 1.21864 0.91178 0.90681 0.98655 1.19989 1.16614 0.95968 0.96931 1.18321 0.77767 0.86728 0.82451 1.90282 1.59669 1.16771 1.79335 1.42164 1.54952 1.11317 1.16606 1.17324 1.13714 0.91517 0.92606 1.24176 1.06502 0.95182 0.97349 1.78153 1.18924 1.07589 1.09505 1.44845 1.32019 1.03724 1.13095 1.20662 1.35916 0.98565 0.93252 0.84100 1.26883 0.96963 0.93773 1.04253 1.70406 1.37122 0.99823 1.37907 0.84532 0.77148 0.80275 0.74218 1.16262 1.19836 1.19835 1.21995 1.11983 0.95346 0.93644 0.93771 0.89781 0.93131 0.89848 0.93029 0.88621 0.92871 0.73515 0.78899 0.80906 0.82384 0.74422 0.81397 0.91446 0.79393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.50 71.98 0.68 -2.56 16 2 C 0.14 3.32 3.15 44.99 0.14 3.46 16 3 C -0.16 -3.33 9.38 71.98 0.68 -2.65 16 4 N -0.71 -21.52 5.09 -323.92 -1.65 -23.16 16 5 C 0.44 12.76 7.46 133.65 1.00 13.75 16 6 N -0.56 -13.68 9.15 -192.50 -1.76 -15.44 16 7 C 0.17 2.89 11.16 84.72 0.95 3.83 16 8 C -0.24 -3.48 10.09 22.33 0.23 -3.25 16 9 C 0.00 0.05 9.63 22.71 0.22 0.27 16 10 C -0.28 -8.19 5.91 -19.88 -0.12 -8.30 16 11 C 0.56 20.32 7.72 86.66 0.67 20.99 16 12 O -0.58 -25.04 10.82 -4.14 -0.04 -25.09 16 13 N -0.61 -21.34 5.42 -306.86 -1.66 -23.00 16 14 C -0.05 -2.10 6.90 37.75 0.26 -1.84 16 15 C -0.06 -3.11 10.85 85.42 0.93 -2.18 16 16 N -0.31 -18.77 10.40 -56.46 -0.59 -19.35 16 17 N -0.17 -9.34 3.74 -190.00 -0.71 -10.05 16 18 C -0.35 -18.66 10.25 84.01 0.86 -17.80 16 19 H 0.14 6.44 7.83 -2.91 -0.02 6.41 16 20 C -0.01 -0.38 5.50 84.95 0.47 0.09 16 21 N -0.82 -47.80 11.81 21.66 0.26 -47.54 16 22 Si 1.02 38.61 29.55 68.60 2.03 40.64 16 23 H -0.24 -8.09 7.11 99.48 0.71 -7.38 16 24 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 25 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 26 C -0.08 -3.66 11.50 83.38 0.96 -2.70 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.18 8.05 -2.39 -0.02 1.16 16 30 H 0.08 1.96 7.63 -2.39 -0.02 1.95 16 31 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.42 14.63 5.10 -94.32 -0.48 14.14 16 35 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.17 1.19 8.06 -2.92 -0.02 1.16 16 37 H 0.16 2.18 6.55 -2.91 -0.02 2.16 16 38 H 0.42 10.69 6.96 -92.71 -0.64 10.04 16 39 H 0.17 9.23 5.91 -2.91 -0.02 9.21 16 40 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.19 6.74 8.06 -2.91 -0.02 6.72 16 Total: -1.00 -77.40 347.49 3.74 -73.66 By element: Atomic # 1 Polarization: 48.27 SS G_CDS: -0.04 Total: 48.23 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 7.91 Total: 1.12 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -6.11 Total: -138.55 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.04 Total: -25.09 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -77.40 3.74 -73.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746183469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.842 kcal (2) G-P(sol) polarization free energy of solvation -77.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds