Wall clock time and date at job start Tue Mar 31 2020 11:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52995 * 109.47488 * 2 1 4 4 C 1.50700 * 109.47340 * 120.00062 * 2 1 3 5 5 N 1.28017 * 119.99996 * 359.97438 * 4 2 1 6 6 N 1.40093 * 120.00341 * 180.02562 * 5 4 2 7 7 C 1.37515 * 120.00482 * 180.02562 * 6 5 4 8 8 N 1.32011 * 126.56599 * 180.02562 * 7 6 5 9 9 C 1.35006 * 105.47996 * 179.97438 * 8 7 6 10 10 C 1.48502 * 126.32698 * 180.02562 * 9 8 7 11 11 C 1.39700 * 120.90374 * 179.97438 * 10 9 8 12 12 C 1.38039 * 119.02762 * 180.02562 * 11 10 9 13 13 N 1.31894 * 120.87717 * 359.97438 * 12 11 10 14 14 C 1.31885 * 121.99250 * 0.02562 * 13 12 11 15 15 C 1.38037 * 120.88033 * 359.97438 * 14 13 12 16 16 N 1.30785 * 107.35033 * 0.25927 * 9 8 7 17 17 O 1.21273 * 110.34681 * 359.54483 * 16 9 8 18 18 C 1.53004 * 109.47021 * 239.99915 * 2 1 3 19 19 C 1.50700 * 109.46944 * 59.99904 * 18 2 1 20 20 H 1.08000 * 120.00121 * 0.02562 * 19 18 2 21 21 C 1.37877 * 119.99570 * 179.97438 * 19 18 2 22 22 N 1.31517 * 120.00441 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99570 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47085 * 90.00283 * 23 21 19 25 25 H 1.48497 * 109.46998 * 209.99891 * 23 21 19 26 26 H 1.48495 * 109.47166 * 330.00339 * 23 21 19 27 27 H 1.09007 * 109.46907 * 300.00181 * 1 2 3 28 28 H 1.08998 * 109.47469 * 59.99594 * 1 2 3 29 29 H 1.09003 * 109.47653 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47745 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47309 * 300.00233 * 3 2 1 32 32 H 1.09001 * 109.47620 * 60.00004 * 3 2 1 33 33 H 1.07998 * 120.00131 * 179.97438 * 4 2 1 34 34 H 0.97005 * 120.00052 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.48578 * 0.04228 * 11 10 9 36 36 H 1.08001 * 119.56550 * 179.97438 * 12 11 10 37 37 H 1.08002 * 119.55345 * 179.97438 * 14 13 12 38 38 H 1.08003 * 120.48987 * 180.02562 * 15 14 13 39 39 H 1.09003 * 109.46750 * 180.02562 * 18 2 1 40 40 H 1.08997 * 109.47182 * 299.99799 * 18 2 1 41 41 H 0.96999 * 119.99628 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.2004 -1.1965 2.0734 6 7 1.6674 -1.8565 3.2175 7 6 0.7738 -2.3791 4.1227 8 7 1.0687 -3.0217 5.2376 9 6 -0.1190 -3.3425 5.7935 10 6 -0.3241 -4.0766 7.0680 11 6 -1.6103 -4.3487 7.5403 12 6 -1.7561 -5.0334 8.7300 13 7 -0.7019 -5.4290 9.4169 14 6 0.5288 -5.1924 9.0061 15 6 0.7640 -4.5139 7.8272 16 7 -1.0556 -2.8917 4.9998 17 8 -0.5640 -2.3330 4.0422 18 6 2.0399 -0.7213 -1.2493 19 6 1.5375 -0.0109 -2.4797 20 1 0.9169 0.8675 -2.3806 21 6 1.8710 -0.4817 -3.7319 22 7 2.6271 -1.5510 -3.8526 23 14 1.2489 0.3993 -5.2572 24 1 2.2272 1.4410 -5.6608 25 1 1.0842 -0.5795 -6.3616 26 1 -0.0593 1.0369 -4.9615 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.0941 -0.8094 1.4011 34 1 2.6211 -1.9454 3.3708 35 1 -2.4780 -4.0283 6.9826 36 1 -2.7465 -5.2480 9.1035 37 1 1.3636 -5.5340 9.6000 38 1 1.7745 -4.3239 7.4965 39 1 3.1299 -0.7217 -1.2490 40 1 1.6766 -1.7489 -1.2492 41 1 2.8620 -1.8819 -4.7337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755679025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:56 Heat of formation + Delta-G solvation = 127.598914 kcal Electronic energy + Delta-G solvation = -24296.348028 eV Core-core repulsion = 20601.025298 eV Total energy + Delta-G solvation = -3695.322730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.50708 -41.10568 -39.65441 -37.79756 -37.02420 -34.95018 -34.13899 -32.88694 -32.35312 -30.97452 -28.95430 -27.91610 -26.52167 -25.89319 -25.09104 -24.01817 -23.87500 -22.32477 -20.13442 -19.70778 -19.28720 -18.33406 -18.12460 -17.77067 -17.62630 -16.80852 -16.69179 -16.50905 -15.42524 -15.21960 -15.05254 -14.85103 -14.65126 -14.54570 -14.44480 -13.96441 -13.66919 -13.27745 -13.02722 -12.81371 -12.73660 -12.72002 -12.60334 -12.27168 -12.19675 -12.15922 -12.05454 -11.69122 -11.28236 -11.11179 -10.88534 -10.65561 -10.62530 -10.46638 -10.22706 -9.51584 -8.11381 -6.17275 -0.54911 0.07990 0.20395 0.56055 1.08296 1.44717 1.46169 1.48170 1.56994 1.80500 2.43904 2.48818 2.78732 3.09625 3.24593 3.50122 3.76323 3.90323 3.91998 3.97960 4.07301 4.16304 4.33686 4.38623 4.50177 4.54768 4.73397 4.81407 4.84079 4.93523 5.05318 5.12766 5.18714 5.19809 5.43648 5.48283 5.55605 5.57753 5.58208 5.59901 5.79866 5.92699 6.32929 6.67787 6.87578 6.96853 7.18896 7.50148 9.00497 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.034880 B = 0.002012 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.567293 B =13911.117767 C =13982.840110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.010 4.010 3 C -0.119 4.119 4 C 0.132 3.868 5 N -0.275 5.275 6 N -0.514 5.514 7 C 0.468 3.532 8 N -0.532 5.532 9 C 0.232 3.768 10 C 0.007 3.993 11 C -0.142 4.142 12 C 0.103 3.897 13 N -0.493 5.493 14 C 0.102 3.898 15 C -0.130 4.130 16 N -0.397 5.397 17 O 0.047 5.953 18 C 0.045 3.955 19 C -0.512 4.512 20 H 0.073 0.927 21 C -0.001 4.001 22 N -0.935 5.935 23 Si 0.952 3.048 24 H -0.274 1.274 25 H -0.293 1.293 26 H -0.263 1.263 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.141 0.859 34 H 0.429 0.571 35 H 0.147 0.853 36 H 0.192 0.808 37 H 0.194 0.806 38 H 0.155 0.845 39 H 0.007 0.993 40 H -0.013 1.013 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -2.023 22.708 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.013 4.013 3 C -0.178 4.178 4 C -0.083 4.083 5 N -0.078 5.078 6 N -0.253 5.253 7 C 0.159 3.841 8 N -0.279 5.279 9 C -0.039 4.039 10 C -0.003 4.003 11 C -0.164 4.164 12 C -0.054 4.054 13 N -0.203 5.203 14 C -0.055 4.055 15 C -0.152 4.152 16 N -0.117 5.117 17 O 0.000 6.000 18 C 0.007 3.993 19 C -0.551 4.551 20 H 0.091 0.909 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.779 3.221 24 H -0.200 1.200 25 H -0.220 1.220 26 H -0.188 1.188 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.276 0.724 35 H 0.165 0.835 36 H 0.209 0.791 37 H 0.210 0.790 38 H 0.173 0.827 39 H 0.026 0.974 40 H 0.005 0.995 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.907 -2.942 23.998 24.491 hybrid contribution 1.417 0.618 -2.433 2.882 sum -2.490 -2.323 21.566 21.833 Atomic orbital electron populations 1.21570 0.93824 1.00873 1.01030 1.19673 0.96539 0.95862 0.89184 1.21677 1.01263 0.92771 1.02058 1.26644 0.98235 0.90973 0.92438 1.74541 1.28472 1.09822 0.94944 1.43905 1.05713 1.57258 1.18394 1.23494 0.81825 0.90617 0.88192 1.72338 1.24527 1.23762 1.07252 1.23697 0.83951 0.99024 0.97262 1.17885 0.95782 0.97409 0.89178 1.22364 0.96583 0.99195 0.98260 1.23180 0.99234 0.92787 0.90151 1.67719 1.00110 1.18656 1.33797 1.23251 0.95158 0.93753 0.93296 1.22394 0.99925 0.97502 0.95360 1.74842 1.21085 1.16892 0.98924 1.85438 1.19127 1.58469 1.36959 1.18983 0.95386 0.93972 0.90938 1.21578 1.30399 1.12130 0.90962 0.90941 1.25831 0.95741 0.95820 1.02389 1.70085 1.38752 1.24746 1.24026 0.85627 0.79176 0.78192 0.79142 1.19957 1.21963 1.18765 0.92373 0.92553 0.94616 0.91993 0.91762 0.91845 0.84197 0.72425 0.83483 0.79133 0.78962 0.82735 0.97433 0.99493 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 7.45 71.98 0.54 -3.48 16 2 C -0.01 -0.33 0.75 -52.93 -0.04 -0.37 16 3 C -0.12 -3.50 8.20 71.98 0.59 -2.91 16 4 C 0.13 3.72 9.56 88.66 0.85 4.57 16 5 N -0.27 -8.06 10.04 -50.46 -0.51 -8.57 16 6 N -0.51 -12.98 6.37 -170.88 -1.09 -14.07 16 7 C 0.47 13.32 9.30 179.19 1.67 14.98 16 8 N -0.53 -14.46 11.39 -311.32 -3.55 -18.00 16 9 C 0.23 6.32 7.83 137.38 1.08 7.39 16 10 C 0.01 0.16 5.91 -19.83 -0.12 0.04 16 11 C -0.14 -2.61 9.79 22.58 0.22 -2.39 16 12 C 0.10 1.56 11.17 84.64 0.95 2.51 16 13 N -0.49 -8.55 10.35 -196.08 -2.03 -10.58 16 14 C 0.10 1.49 11.17 84.64 0.95 2.44 16 15 C -0.13 -2.28 9.80 22.57 0.22 -2.05 16 16 N -0.40 -11.96 11.93 -57.86 -0.69 -12.65 16 17 O 0.05 1.49 11.26 70.55 0.79 2.29 16 18 C 0.05 2.06 4.02 29.85 0.12 2.18 16 19 C -0.51 -25.61 7.65 25.60 0.20 -25.41 16 20 H 0.07 3.42 5.68 -2.91 -0.02 3.40 16 21 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 22 N -0.93 -53.66 13.29 21.45 0.28 -53.37 16 23 Si 0.95 41.86 29.54 68.60 2.03 43.88 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 H 0.06 1.78 8.06 -2.38 -0.02 1.76 16 28 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 29 H 0.03 1.33 8.06 -2.39 -0.02 1.31 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 31 H 0.06 2.07 6.62 -2.39 -0.02 2.05 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.14 3.07 8.00 -2.91 -0.02 3.05 16 34 H 0.43 8.18 8.75 -213.32 -1.87 6.32 16 35 H 0.15 2.53 7.95 -2.91 -0.02 2.50 16 36 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.19 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.15 2.41 7.96 -2.91 -0.02 2.38 16 39 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 40 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 41 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -64.72 358.24 2.12 -62.60 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.80 Total: 10.53 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 7.67 Total: -2.06 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -7.57 Total: -117.24 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.79 Total: 2.29 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -64.72 2.12 -62.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755679025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.196 kcal (2) G-P(sol) polarization free energy of solvation -64.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds