Wall clock time and date at job start Tue Mar 31 2020 11:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47324 * 2 1 4 4 N 1.46499 * 109.47132 * 120.00626 * 2 1 3 5 5 N 1.39890 * 125.74352 * 299.97084 * 4 2 1 6 6 C 1.30286 * 109.23903 * 180.02562 * 5 4 2 7 7 C 1.41498 * 108.19163 * 359.73917 * 6 5 4 8 8 C 1.46730 * 126.52434 * 180.30521 * 7 6 5 9 9 O 1.21684 * 120.00084 * 180.13091 * 8 7 6 10 10 N 1.34780 * 119.99869 * 0.13899 * 8 7 6 11 11 C 1.39393 * 119.99768 * 175.12863 * 10 8 7 12 12 C 1.38659 * 119.64604 * 184.90476 * 11 10 8 13 13 C 1.40818 * 118.66915 * 179.77597 * 12 11 10 14 14 C 1.41544 * 120.99636 * 180.25911 * 13 12 11 15 15 H 1.08004 * 120.00013 * 203.92975 * 14 13 12 16 16 C 1.40033 * 120.00347 * 23.92994 * 14 13 12 17 17 N 1.30744 * 119.99522 * 16.66900 * 16 14 13 18 18 Si 1.86796 * 120.00390 * 196.67382 * 16 14 13 19 19 H 1.48498 * 109.47139 * 89.99629 * 18 16 14 20 20 H 1.48493 * 109.47012 * 210.00083 * 18 16 14 21 21 H 1.48499 * 109.46965 * 329.99951 * 18 16 14 22 22 C 1.41164 * 118.00602 * 0.48589 * 13 12 11 23 23 C 1.36587 * 119.13117 * 359.74903 * 22 13 12 24 24 N 1.32061 * 121.26401 * 0.02562 * 23 22 13 25 25 C 1.34853 * 125.74698 * 119.99852 * 4 2 1 26 26 N 1.37996 * 126.44808 * 359.97438 * 25 4 2 27 27 H 1.09006 * 109.46934 * 299.99606 * 1 2 3 28 28 H 1.08998 * 109.47412 * 59.99817 * 1 2 3 29 29 H 1.09001 * 109.47488 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46547 * 240.00038 * 2 1 3 31 31 H 1.09006 * 109.46794 * 60.00308 * 3 2 1 32 32 H 1.09001 * 109.47486 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47693 * 300.00513 * 3 2 1 34 34 H 1.08003 * 125.90546 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00283 * 355.12286 * 10 8 7 36 36 H 1.07995 * 120.66704 * 0.02562 * 12 11 10 37 37 H 0.96999 * 119.99571 * 179.97438 * 17 16 14 38 38 H 1.08008 * 120.43414 * 179.77920 * 22 13 12 39 39 H 1.08006 * 119.36959 * 180.02562 * 23 22 13 40 40 H 0.97003 * 120.00157 * 0.02562 * 26 25 4 41 41 H 0.96998 * 120.00011 * 179.72626 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7559 -0.3188 2.5189 6 6 2.3471 -1.1543 3.3250 7 6 3.0225 -2.1205 2.5424 8 6 3.8124 -3.2518 3.0417 9 8 4.3476 -4.0132 2.2578 10 7 3.9449 -3.4476 4.3686 11 6 4.6089 -4.5776 4.8433 12 6 4.6527 -4.8249 6.2070 13 6 5.3249 -5.9749 6.6637 14 6 5.3952 -6.2780 8.0445 15 1 6.1945 -6.8992 8.4210 16 6 4.4285 -5.7724 8.9225 17 7 3.3002 -5.3064 8.4544 18 14 4.7510 -5.7638 10.7624 19 1 5.4068 -4.4872 11.1440 20 1 3.4640 -5.8964 11.4911 21 1 5.6388 -6.9009 11.1147 22 6 5.9306 -6.8139 5.7035 23 6 5.8388 -6.4853 4.3809 24 7 5.1963 -5.4008 3.9872 25 6 2.7968 -1.7918 1.2073 26 7 3.2751 -2.4690 0.1042 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.6767 1.9562 0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 2.3219 -1.1186 4.4042 35 1 3.5784 -2.8023 4.9931 36 1 4.1774 -4.1513 6.9045 37 1 2.6305 -4.9565 9.0626 38 1 6.4594 -7.7042 6.0106 39 1 6.3005 -7.1247 3.6430 40 1 3.0556 -2.1585 -0.7883 41 1 3.8343 -3.2528 0.2211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758357136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:45 Heat of formation + Delta-G solvation = 52.050357 kcal Electronic energy + Delta-G solvation = -25346.428626 eV Core-core repulsion = 21647.829865 eV Total energy + Delta-G solvation = -3698.598761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.40067 -40.87042 -39.23383 -36.61124 -36.15070 -35.73294 -35.17734 -32.42810 -31.44820 -30.43181 -29.33205 -28.20406 -27.86716 -24.68829 -23.91092 -23.70215 -22.49404 -21.03251 -20.80748 -19.36273 -18.98084 -18.28847 -17.31450 -17.06961 -16.82545 -16.54210 -16.02424 -15.88157 -15.66097 -15.59890 -15.39284 -15.01166 -14.50009 -14.32958 -14.16417 -14.10340 -13.79571 -13.15576 -13.10303 -13.09771 -12.89701 -12.62296 -12.38161 -12.37161 -12.20873 -12.02631 -11.88085 -11.70076 -11.41727 -11.09772 -10.84058 -9.99030 -9.89188 -9.52177 -8.97730 -8.71467 -8.56924 -6.52389 0.66983 1.02479 1.04726 1.23090 1.35396 1.43148 1.56124 1.62543 2.22449 2.37631 2.62317 2.72062 2.90653 3.39702 3.82159 3.84453 3.93451 4.00429 4.08042 4.21339 4.34926 4.60136 4.68697 4.70908 4.80822 4.82289 4.84796 4.92684 5.00263 5.15496 5.19217 5.23435 5.26555 5.43735 5.55693 5.64124 5.74409 5.96045 6.21584 6.25835 6.52320 6.54866 6.69195 6.85068 6.86878 6.92319 7.48897 7.92970 8.29942 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.002977 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.701066 B = 9402.089487 C =10475.523078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 C -0.155 4.155 4 N -0.388 5.388 5 N -0.312 5.312 6 C 0.110 3.890 7 C -0.394 4.394 8 C 0.586 3.414 9 O -0.544 6.544 10 N -0.649 5.649 11 C 0.341 3.659 12 C -0.265 4.265 13 C 0.114 3.886 14 C -0.485 4.485 15 H 0.083 0.917 16 C 0.040 3.960 17 N -0.810 5.810 18 Si 0.987 3.013 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.301 4.301 23 C 0.114 3.886 24 N -0.577 5.577 25 C 0.433 3.567 26 N -0.819 5.819 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.206 0.794 35 H 0.418 0.582 36 H 0.123 0.877 37 H 0.292 0.708 38 H 0.114 0.886 39 H 0.149 0.851 40 H 0.414 0.586 41 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 13.255 -13.334 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 C -0.212 4.212 4 N -0.177 5.177 5 N -0.130 5.130 6 C -0.080 4.080 7 C -0.413 4.413 8 C 0.377 3.623 9 O -0.421 6.421 10 N -0.295 5.295 11 C 0.115 3.885 12 C -0.291 4.291 13 C 0.106 3.894 14 C -0.515 4.515 15 H 0.101 0.899 16 C -0.178 4.178 17 N -0.435 5.435 18 Si 0.808 3.192 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.325 4.325 23 C -0.040 4.040 24 N -0.297 5.297 25 C 0.196 3.804 26 N -0.370 5.370 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.223 0.777 35 H 0.255 0.745 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.166 0.834 40 H 0.246 0.754 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.047 14.189 -14.981 21.804 hybrid contribution 0.620 -1.116 1.872 2.266 sum -6.427 13.073 -13.110 19.597 Atomic orbital electron populations 1.22104 0.92360 1.02615 1.04231 1.21681 0.96446 0.94556 0.82648 1.22099 1.01179 0.93735 1.04228 1.48778 1.41023 1.21189 1.06734 1.76955 1.25909 1.24167 0.85986 1.24100 0.92693 0.90408 1.00804 1.19272 1.22713 1.07511 0.91846 1.17543 0.79362 0.83843 0.81577 1.90704 1.48407 1.47497 1.55484 1.43115 1.55769 1.22672 1.07913 1.18435 0.92633 0.88105 0.89313 1.21520 1.13105 1.02068 0.92408 1.18004 0.88033 0.89247 0.94109 1.19860 1.10756 1.29015 0.91910 0.89881 1.26822 0.93001 0.91572 1.06392 1.69822 1.04990 1.28796 1.39906 0.85120 0.78940 0.80011 0.75149 1.18504 1.19161 1.18276 1.21825 1.13090 1.03353 0.94199 1.21938 0.94867 0.92899 0.94258 1.67376 1.17097 1.07470 1.37741 1.18087 0.87908 0.85604 0.88824 1.41769 1.57250 1.33482 1.04455 0.92312 0.87742 0.93085 0.86454 0.92293 0.92942 0.87778 0.77700 0.74462 0.85898 0.89681 0.86818 0.83410 0.75401 0.73810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.45 71.98 0.68 -1.24 16 2 C 0.15 2.04 3.67 44.99 0.17 2.20 16 3 C -0.15 -1.86 9.44 71.98 0.68 -1.18 16 4 N -0.39 -8.83 3.27 -323.34 -1.06 -9.89 16 5 N -0.31 -8.28 12.30 -56.22 -0.69 -8.97 16 6 C 0.11 3.05 11.50 85.73 0.99 4.04 16 7 C -0.39 -12.81 6.15 -19.99 -0.12 -12.94 16 8 C 0.59 24.04 7.75 86.46 0.67 24.71 16 9 O -0.54 -25.35 13.40 -4.30 -0.06 -25.41 16 10 N -0.65 -27.42 5.38 -312.15 -1.68 -29.09 16 11 C 0.34 17.42 7.42 132.78 0.98 18.41 16 12 C -0.27 -14.09 8.63 23.00 0.20 -13.89 16 13 C 0.11 6.26 5.60 -21.11 -0.12 6.14 16 14 C -0.48 -25.57 9.12 23.52 0.21 -25.36 16 15 H 0.08 4.20 7.90 -2.91 -0.02 4.17 16 16 C 0.04 1.92 5.20 85.29 0.44 2.36 16 17 N -0.81 -40.40 10.92 21.84 0.24 -40.16 16 18 Si 0.99 36.50 29.59 68.60 2.03 38.53 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 20 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 21 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 22 C -0.30 -15.32 9.85 22.60 0.22 -15.10 16 23 C 0.11 5.63 11.10 84.27 0.94 6.56 16 24 N -0.58 -30.50 7.85 -194.30 -1.53 -32.03 16 25 C 0.43 11.64 7.98 132.70 1.06 12.70 16 26 N -0.82 -17.66 9.02 -54.56 -0.49 -18.15 16 27 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.12 1.00 6.77 -2.39 -0.02 0.98 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.21 4.53 7.50 -2.91 -0.02 4.51 16 35 H 0.42 14.76 7.65 -92.71 -0.71 14.05 16 36 H 0.12 6.47 6.20 -2.91 -0.02 6.46 16 37 H 0.29 13.01 8.29 -92.71 -0.77 12.24 16 38 H 0.11 5.29 8.06 -2.91 -0.02 5.26 16 39 H 0.15 6.26 8.06 -2.91 -0.02 6.24 16 40 H 0.41 5.34 7.61 -92.71 -0.71 4.63 16 41 H 0.43 11.16 7.01 -92.71 -0.65 10.51 16 Total: -1.00 -73.02 349.84 2.81 -70.21 By element: Atomic # 1 Polarization: 48.51 SS G_CDS: -0.96 Total: 47.56 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 7.00 Total: 7.42 kcal Atomic # 7 Polarization: -133.10 SS G_CDS: -5.21 Total: -138.31 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.06 Total: -25.41 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -73.02 2.81 -70.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758357136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.262 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds