Wall clock time and date at job start Tue Mar 31 2020 10:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35232 * 126.06830 * 2 1 4 4 C 1.40420 * 107.86791 * 179.84616 * 3 2 1 5 5 N 1.40071 * 125.97905 * 180.14509 * 4 3 2 6 6 C 1.34779 * 119.99775 * 0.29285 * 5 4 3 7 7 O 1.21755 * 120.00045 * 0.02562 * 6 5 4 8 8 C 1.41801 * 119.99982 * 180.02562 * 6 5 4 9 9 C 1.35057 * 119.99515 * 173.20434 * 8 6 5 10 10 C 1.46966 * 120.00262 * 349.45348 * 9 8 6 11 11 C 1.41429 * 126.44184 * 318.16606 * 10 9 8 12 12 N 1.30446 * 108.03751 * 179.85591 * 11 10 9 13 13 N 1.39916 * 108.96931 * 0.41050 * 12 11 10 14 14 C 1.46505 * 125.74735 * 179.75710 * 13 12 11 15 15 C 1.34410 * 108.51346 * 359.73571 * 13 12 11 16 16 N 1.31238 * 108.04886 * 0.41561 * 4 3 2 17 17 N 1.34968 * 126.06920 * 180.30286 * 2 1 3 18 18 C 1.46499 * 125.97278 * 359.96837 * 17 2 1 19 19 C 1.50699 * 109.47274 * 90.00039 * 18 17 2 20 20 H 1.08001 * 119.99851 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00085 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00302 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00051 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47183 * 90.00099 * 23 21 19 25 25 H 1.48496 * 109.47379 * 210.00077 * 23 21 19 26 26 H 1.48504 * 109.47200 * 330.00302 * 23 21 19 27 27 H 1.09004 * 109.47563 * 269.69242 * 1 2 3 28 28 H 1.09003 * 109.47512 * 149.69460 * 1 2 3 29 29 H 1.08997 * 109.47133 * 29.69855 * 1 2 3 30 30 H 1.08002 * 126.06288 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00498 * 180.29378 * 5 4 3 32 32 H 1.07992 * 119.99811 * 353.20236 * 8 6 5 33 33 H 1.08005 * 119.99520 * 169.45237 * 9 8 6 34 34 H 1.08004 * 125.98252 * 0.02562 * 11 10 9 35 35 H 1.09004 * 109.46631 * 269.97482 * 14 13 12 36 36 H 1.08992 * 109.46758 * 29.97568 * 14 13 12 37 37 H 1.08992 * 109.46821 * 149.97662 * 14 13 12 38 38 H 1.07997 * 126.31998 * 180.02562 * 15 13 12 39 39 H 1.09001 * 109.47492 * 210.00248 * 18 17 2 40 40 H 1.09008 * 109.47166 * 329.99690 * 18 17 2 41 41 H 0.97000 * 120.00319 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3031 1.0931 0.0000 4 6 3.6371 0.6545 0.0036 5 7 4.7728 1.4743 0.0076 6 6 4.6361 2.8151 0.0143 7 8 3.5253 3.3137 0.0173 8 6 5.7858 3.6450 0.0178 9 6 5.6534 4.9826 -0.1139 10 6 4.3552 5.5590 -0.4911 11 6 3.4659 5.0575 -1.4698 12 7 2.4244 5.8419 -1.5091 13 7 2.5965 6.8733 -0.5794 14 6 1.6500 7.9619 -0.3237 15 6 3.7763 6.6971 0.0399 16 7 3.6336 -0.6578 -0.0034 17 7 2.3016 -1.0909 -0.0058 18 6 1.8499 -2.4845 -0.0125 19 6 1.6944 -2.9554 -1.4356 20 1 1.9100 -2.2836 -2.2532 21 6 1.2758 -4.2435 -1.6937 22 7 1.1396 -4.6543 -2.9356 23 14 0.9022 -5.4052 -0.2794 24 1 -0.5286 -5.2810 0.0985 25 1 1.1840 -6.8017 -0.6983 26 1 1.7540 -5.0565 0.8859 27 1 -0.3634 -0.0055 1.0277 28 1 -0.3634 -0.8872 -0.5186 29 1 -0.3633 0.8926 -0.5091 30 1 1.9717 2.1210 -0.0004 31 1 5.6577 1.0771 0.0056 32 1 6.7672 3.2075 0.1259 33 1 6.5017 5.6287 0.0579 34 1 3.6206 4.1773 -2.0764 35 1 1.8777 8.8028 -0.9788 36 1 0.6354 7.6142 -0.5180 37 1 1.7327 8.2784 0.7160 38 1 4.1948 7.3277 0.8104 39 1 2.5847 -3.1072 0.4980 40 1 0.8914 -2.5584 0.5015 41 1 0.8455 -5.5606 -3.1172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767934015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:00 Heat of formation + Delta-G solvation = 134.238353 kcal Electronic energy + Delta-G solvation = -25267.545923 eV Core-core repulsion = 21572.511101 eV Total energy + Delta-G solvation = -3695.034822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35062 -41.93252 -40.52403 -36.41844 -35.24400 -34.87634 -33.61071 -33.06843 -32.80058 -30.51229 -29.04917 -27.90650 -27.47413 -25.39948 -24.10746 -22.48045 -21.81196 -21.29047 -21.16123 -19.79112 -19.24130 -18.20358 -17.74409 -17.23106 -16.81750 -16.49957 -16.27808 -16.10272 -15.51237 -15.31788 -14.97309 -14.92313 -14.62859 -14.35204 -13.90221 -13.87237 -13.76066 -13.66428 -13.53206 -13.38080 -13.22316 -12.92348 -12.83072 -12.55958 -12.25959 -11.84856 -11.61301 -11.50350 -11.33764 -10.94598 -10.90308 -10.52783 -10.17330 -9.55382 -9.04754 -8.71810 -8.41521 -6.52928 0.07706 1.01352 1.14589 1.33490 1.34803 1.45329 1.52472 1.79813 1.84231 2.20958 2.25955 2.51567 2.69120 2.90581 3.70604 3.78190 4.04766 4.09801 4.18321 4.28253 4.39488 4.43650 4.48395 4.52993 4.64833 4.71448 4.72883 4.79748 4.86150 4.87829 4.94134 4.99521 5.13440 5.22236 5.27100 5.39698 5.60730 5.75197 5.91510 6.03569 6.26221 6.36709 6.42353 6.51566 6.86840 7.05381 7.11253 7.32511 8.75371 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.002846 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.173413 B = 9837.499926 C =10454.416420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.086 3.914 3 C -0.295 4.295 4 C 0.280 3.720 5 N -0.627 5.627 6 C 0.544 3.456 7 O -0.540 6.540 8 C -0.254 4.254 9 C 0.068 3.932 10 C -0.256 4.256 11 C 0.113 3.887 12 N -0.357 5.357 13 N -0.380 5.380 14 C 0.093 3.907 15 C 0.090 3.910 16 N -0.360 5.360 17 N -0.345 5.345 18 C 0.243 3.757 19 C -0.551 4.551 20 H 0.022 0.978 21 C 0.021 3.979 22 N -0.938 5.938 23 Si 0.952 3.048 24 H -0.250 1.250 25 H -0.277 1.277 26 H -0.245 1.245 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.162 0.838 31 H 0.422 0.578 32 H 0.168 0.832 33 H 0.182 0.818 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.223 0.777 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 25.904 11.647 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C -0.326 4.326 4 C 0.025 3.975 5 N -0.277 5.277 6 C 0.338 3.662 7 O -0.417 6.417 8 C -0.275 4.275 9 C 0.047 3.953 10 C -0.268 4.268 11 C -0.073 4.073 12 N -0.178 5.178 13 N -0.160 5.160 14 C -0.046 4.046 15 C -0.059 4.059 16 N -0.191 5.191 17 N -0.127 5.127 18 C 0.123 3.877 19 C -0.590 4.590 20 H 0.040 0.960 21 C -0.179 4.179 22 N -0.576 5.576 23 Si 0.773 3.227 24 H -0.174 1.174 25 H -0.202 1.202 26 H -0.168 1.168 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.179 0.821 31 H 0.260 0.740 32 H 0.185 0.815 33 H 0.199 0.801 34 H 0.171 0.829 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.239 0.761 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.067 25.324 10.999 28.268 hybrid contribution 0.431 -0.957 -0.038 1.051 sum 6.498 24.366 10.961 27.497 Atomic orbital electron populations 1.20505 0.85504 1.04174 1.04313 1.21725 0.96577 0.86583 0.99531 1.21402 0.90179 0.99648 1.21352 1.19379 0.89144 0.89156 0.99818 1.42835 1.06467 1.05623 1.72782 1.18116 0.91663 0.80474 0.75940 1.90807 1.28565 1.73186 1.49186 1.21880 0.97791 0.94448 1.13358 1.22117 0.94295 0.93729 0.85147 1.19659 1.00722 1.00273 1.06140 1.23633 0.90712 0.95828 0.97171 1.77043 1.24212 1.01980 1.14613 1.48549 1.16582 1.21662 1.29200 1.22172 0.92009 0.86032 1.04432 1.23628 0.87010 0.97157 0.98065 1.77167 0.99575 1.10236 1.32106 1.48397 1.01971 1.06946 1.55385 1.19742 0.96310 0.74709 0.96951 1.21259 1.47776 0.98778 0.91138 0.96008 1.25857 0.93676 0.99252 0.99088 1.70038 1.46899 1.19240 1.21456 0.85658 0.80489 0.77655 0.78907 1.17411 1.20185 1.16811 0.88114 0.91313 0.88838 0.82103 0.74039 0.81499 0.80126 0.82930 0.89153 0.90280 0.86405 0.76088 0.93285 0.91177 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.01 9.89 71.23 0.70 -2.30 16 2 C 0.09 3.73 6.92 41.38 0.29 4.02 16 3 C -0.30 -12.66 9.51 22.11 0.21 -12.45 16 4 C 0.28 11.78 8.10 133.35 1.08 12.86 16 5 N -0.63 -19.68 5.44 -315.45 -1.71 -21.40 16 6 C 0.54 15.33 7.03 85.12 0.60 15.93 16 7 O -0.54 -18.59 8.93 -4.52 -0.04 -18.63 16 8 C -0.25 -4.34 9.81 22.42 0.22 -4.12 16 9 C 0.07 0.95 10.15 23.83 0.24 1.19 16 10 C -0.26 -5.37 4.69 -20.19 -0.09 -5.46 16 11 C 0.11 3.30 8.86 85.68 0.76 4.06 16 12 N -0.36 -10.77 12.49 -56.18 -0.70 -11.47 16 13 N -0.38 -7.79 3.98 -367.45 -1.46 -9.25 16 14 C 0.09 0.99 11.44 127.77 1.46 2.45 16 15 C 0.09 1.44 11.52 84.31 0.97 2.41 16 16 N -0.36 -17.28 12.59 -54.49 -0.69 -17.96 16 17 N -0.34 -16.81 3.59 -338.45 -1.22 -18.03 16 18 C 0.24 12.04 4.88 85.63 0.42 12.46 16 19 C -0.55 -32.67 9.94 25.60 0.25 -32.42 16 20 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 21 C 0.02 1.20 5.47 84.65 0.46 1.66 16 22 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 23 Si 0.95 41.75 27.47 68.60 1.88 43.64 16 24 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 27 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 28 H 0.07 2.57 7.71 -2.39 -0.02 2.56 16 29 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.16 6.87 5.90 -2.91 -0.02 6.85 16 31 H 0.42 10.53 8.78 -92.71 -0.81 9.72 16 32 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.15 4.89 7.49 -2.91 -0.02 4.87 16 35 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.22 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.05 2.41 7.20 -2.39 -0.02 2.39 16 40 H 0.07 3.09 7.07 -2.38 -0.02 3.07 16 41 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -87.93 352.84 4.13 -83.79 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.20 Total: 27.00 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 7.58 Total: 0.28 kcal Atomic # 7 Polarization: -130.60 SS G_CDS: -5.48 Total: -136.08 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.04 Total: -18.63 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.64 kcal Total: -87.93 4.13 -83.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767934015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.030 kcal (2) G-P(sol) polarization free energy of solvation -87.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds