Wall clock time and date at job start Tue Mar 31 2020 10:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40194 * 125.96966 * 180.14766 * 4 3 2 6 6 C 1.34769 * 120.00388 * 0.22800 * 5 4 3 7 7 O 1.21596 * 120.00202 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00102 * 180.02562 * 6 5 4 9 9 N 1.40094 * 120.00010 * 359.97438 * 8 6 5 10 10 C 1.39679 * 119.99969 * 180.02562 * 9 8 6 11 11 C 1.38910 * 120.07533 * 359.71993 * 10 9 8 12 12 C 1.38103 * 119.92662 * 179.79115 * 11 10 9 13 13 C 1.38290 * 120.07100 * 0.49468 * 12 11 10 14 14 C 1.38281 * 120.15031 * 359.73615 * 13 12 11 15 15 C 1.38106 * 120.07677 * 0.03109 * 14 13 12 16 16 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46501 * 125.97470 * 359.93137 * 17 2 1 19 19 C 1.50696 * 109.47264 * 89.99908 * 18 17 2 20 20 H 1.08000 * 120.00129 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00036 * 180.02562 * 19 18 17 22 22 N 1.31524 * 119.99722 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00247 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47094 * 89.99943 * 23 21 19 25 25 H 1.48498 * 109.46928 * 209.99880 * 23 21 19 26 26 H 1.48495 * 109.47226 * 329.99956 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08003 * 126.06496 * 0.04258 * 3 2 1 31 31 H 0.97007 * 119.99508 * 180.23370 * 5 4 3 32 32 H 0.96996 * 120.00047 * 180.02562 * 8 6 5 33 33 H 0.97002 * 120.00396 * 0.02562 * 9 8 6 34 34 H 1.08004 * 120.03675 * 0.02562 * 11 10 9 35 35 H 1.07991 * 119.96507 * 180.25059 * 12 11 10 36 36 H 1.08001 * 119.92342 * 179.72341 * 13 12 11 37 37 H 1.08008 * 119.96602 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.03790 * 179.97438 * 15 14 13 39 39 H 1.08996 * 109.46588 * 210.00143 * 18 17 2 40 40 H 1.08999 * 109.47071 * 329.99324 * 18 17 2 41 41 H 0.96996 * 119.99502 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 7 7.0079 3.0310 0.0121 10 6 8.1404 3.8485 0.0157 11 6 8.0013 5.2306 0.0164 12 6 9.1231 6.0360 0.0244 13 6 10.3840 5.4680 0.0213 14 6 10.5261 4.0925 0.0158 15 6 9.4084 3.2812 0.0127 16 7 3.6337 -0.6575 -0.0044 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4846 -0.0121 19 6 1.6938 -2.9557 -1.4350 20 1 1.9089 -2.2841 -2.2529 21 6 1.2752 -4.2439 -1.6926 22 7 1.0127 -5.0616 -0.6965 23 14 1.0808 -4.8277 -3.4564 24 1 2.3610 -5.4144 -3.9275 25 1 0.0112 -5.8557 -3.5224 26 1 0.7156 -3.6772 -4.3212 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9721 2.1211 0.0006 31 1 5.6587 1.0778 0.0036 32 1 5.6314 4.5696 0.0201 33 1 7.1064 2.0660 0.0075 34 1 7.0169 5.6749 0.0146 35 1 9.0157 7.1106 0.0290 36 1 11.2597 6.1001 0.0230 37 1 11.5123 3.6520 0.0138 38 1 9.5201 2.2070 0.0079 39 1 2.5852 -3.1069 0.4981 40 1 0.8920 -2.5583 0.5024 41 1 0.7178 -5.9677 -0.8778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777617935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:24 Heat of formation + Delta-G solvation = 125.573922 kcal Electronic energy + Delta-G solvation = -24585.079995 eV Core-core repulsion = 20889.669455 eV Total energy + Delta-G solvation = -3695.410540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99753 -40.11520 -39.28118 -36.46950 -34.97810 -33.40306 -32.29200 -31.42236 -31.13634 -30.72367 -28.27122 -26.70948 -26.37786 -23.78025 -22.94268 -22.39084 -21.84883 -19.99652 -19.76443 -18.60943 -18.21773 -16.72436 -16.53549 -16.22476 -15.90018 -15.77332 -15.30992 -14.99696 -14.45220 -14.33961 -14.17624 -14.10014 -13.75695 -13.68185 -13.04065 -12.50213 -12.39302 -12.31474 -11.90636 -11.86701 -11.71886 -11.44306 -11.35406 -11.13961 -10.87036 -10.55054 -10.35396 -10.20296 -9.80873 -9.68301 -9.56620 -9.27465 -8.66841 -8.01692 -7.65949 -7.43078 -6.28056 -4.35866 1.09273 1.23139 1.63102 2.49736 2.54454 2.95003 3.19993 3.26365 3.31020 3.55482 3.70848 3.75291 4.27784 4.43183 4.53665 4.67787 4.90245 5.05515 5.13296 5.23494 5.27977 5.47212 5.61685 5.65646 5.87064 5.89860 6.00468 6.07907 6.17887 6.20389 6.30748 6.39837 6.44281 6.57661 6.63489 6.89935 7.01633 7.13337 7.16278 7.43759 7.64588 7.85547 7.88096 8.01435 8.32563 8.59590 8.72109 9.30681 10.79172 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.002414 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.416074 B =11594.347677 C =12471.984095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.289 4.289 4 C 0.278 3.722 5 N -0.639 5.639 6 C 0.722 3.278 7 O -0.550 6.550 8 N -0.530 5.530 9 N -0.551 5.551 10 C 0.219 3.781 11 C -0.197 4.197 12 C -0.068 4.068 13 C -0.178 4.178 14 C -0.067 4.067 15 C -0.188 4.188 16 N -0.321 5.321 17 N -0.316 5.316 18 C 0.258 3.742 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.160 0.840 31 H 0.402 0.598 32 H 0.435 0.565 33 H 0.424 0.576 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.089 18.609 2.772 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.320 4.320 4 C 0.025 3.975 5 N -0.291 5.291 6 C 0.421 3.579 7 O -0.422 6.422 8 N -0.286 5.286 9 N -0.282 5.282 10 C 0.117 3.883 11 C -0.220 4.220 12 C -0.087 4.087 13 C -0.198 4.198 14 C -0.086 4.086 15 C -0.212 4.212 16 N -0.151 5.151 17 N -0.098 5.098 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.178 0.822 31 H 0.237 0.763 32 H 0.282 0.718 33 H 0.266 0.734 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.633 17.518 2.820 22.376 hybrid contribution 0.067 -0.026 -0.946 0.948 sum 13.700 17.492 1.874 22.298 Atomic orbital electron populations 1.20388 0.87814 1.03940 1.02595 1.21066 0.94973 0.87036 1.00690 1.21214 0.89567 0.99874 1.21312 1.18611 0.86296 0.89336 1.03287 1.41315 1.07660 1.03621 1.76493 1.15358 0.83198 0.80808 0.78582 1.90987 1.20914 1.72850 1.57418 1.44457 0.94027 1.08555 1.81570 1.43415 0.93780 1.06474 1.84487 1.17714 0.85062 0.90361 0.95180 1.20465 0.99315 0.91394 1.10823 1.20891 0.91985 0.99457 0.96330 1.20963 0.97264 0.95012 1.06562 1.20884 0.97831 0.93484 0.96389 1.20497 0.90187 1.00235 1.10284 1.77239 1.00160 1.08126 1.29582 1.48996 1.00771 1.07831 1.52220 1.19704 0.96017 0.71247 0.98958 1.21321 1.46862 0.97995 0.91350 0.91733 1.24933 0.94655 0.96050 0.98154 1.69923 1.44859 1.06997 1.31129 0.86352 0.78025 0.78578 0.83720 1.20344 1.20855 1.19647 0.91015 0.89853 0.90552 0.82230 0.76309 0.71849 0.73385 0.86427 0.85942 0.86268 0.85758 0.85623 0.92983 0.92705 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.50 9.89 36.01 0.36 -1.15 16 2 C 0.09 1.96 6.93 -82.28 -0.57 1.39 16 3 C -0.29 -5.89 9.52 -39.83 -0.38 -6.27 16 4 C 0.28 5.59 8.11 -154.37 -1.25 4.34 16 5 N -0.64 -9.82 5.41 -15.51 -0.08 -9.90 16 6 C 0.72 10.52 8.64 -86.92 -0.75 9.77 16 7 O -0.55 -9.74 14.31 5.28 0.08 -9.67 16 8 N -0.53 -5.60 6.22 27.63 0.17 -5.43 16 9 N -0.55 -4.90 6.45 32.41 0.21 -4.69 16 10 C 0.22 1.90 6.72 -83.78 -0.56 1.33 16 11 C -0.20 -1.61 9.48 -39.38 -0.37 -1.98 16 12 C -0.07 -0.49 10.04 -39.61 -0.40 -0.89 16 13 C -0.18 -1.25 10.04 -39.55 -0.40 -1.64 16 14 C -0.07 -0.47 10.04 -39.61 -0.40 -0.87 16 15 C -0.19 -1.45 9.90 -39.38 -0.39 -1.84 16 16 N -0.32 -7.28 12.59 31.44 0.40 -6.88 16 17 N -0.32 -7.40 3.59 -58.33 -0.21 -7.61 16 18 C 0.26 6.55 5.81 -5.20 -0.03 6.52 16 19 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 23 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.16 3.18 5.91 -52.48 -0.31 2.87 16 31 H 0.40 4.95 6.75 -40.82 -0.28 4.67 16 32 H 0.44 3.92 6.70 -182.61 -1.22 2.70 16 33 H 0.42 3.29 6.71 -182.60 -1.23 2.06 16 34 H 0.12 0.82 6.20 -52.48 -0.33 0.50 16 35 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.06 1.37 7.65 -51.93 -0.40 0.98 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -32.54 353.09 -10.63 -43.18 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.66 Total: 8.41 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -5.57 Total: -4.59 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 1.22 Total: -58.60 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.54 -10.63 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777617935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.751 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds