Wall clock time and date at job start Tue Mar 31 2020 11:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 N 1.46506 * 109.47182 * 120.00044 * 2 1 3 5 5 C 1.38466 * 120.00291 * 84.72314 * 4 2 1 6 6 C 1.39405 * 119.53366 * 359.73187 * 5 4 2 7 7 C 1.36860 * 119.37456 * 179.70299 * 6 5 4 8 8 C 1.40349 * 118.49591 * 0.55783 * 7 6 5 9 9 C 1.47521 * 120.48007 * 179.74789 * 8 7 6 10 10 O 1.21614 * 120.00067 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00136 * 179.97438 * 9 8 7 12 12 C 1.40537 * 119.99892 * 180.02562 * 11 9 8 13 13 C 1.40663 * 126.08679 * 359.68760 * 12 11 9 14 14 N 1.30905 * 108.38764 * 179.87704 * 13 12 11 15 15 N 1.40065 * 108.41358 * 0.38325 * 14 13 12 16 16 C 1.37317 * 126.06748 * 179.73394 * 15 14 13 17 17 H 1.07998 * 119.99711 * 180.02562 * 16 15 14 18 18 C 1.38986 * 120.00431 * 0.02667 * 16 15 14 19 19 N 1.31295 * 119.99407 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00166 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47195 * 89.99668 * 20 18 16 22 22 H 1.48502 * 109.47184 * 209.99704 * 20 18 16 23 23 H 1.48494 * 109.47209 * 329.99920 * 20 18 16 24 24 C 1.35693 * 126.08554 * 179.97438 * 12 11 9 25 25 C 1.39572 * 119.04536 * 359.72467 * 8 7 6 26 26 N 1.31682 * 120.51894 * 359.97438 * 25 8 7 27 27 H 1.08997 * 109.47379 * 300.00069 * 1 2 3 28 28 H 1.09002 * 109.47097 * 60.00557 * 1 2 3 29 29 H 1.09007 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47189 * 239.99632 * 2 1 3 31 31 H 1.09005 * 109.47224 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47121 * 299.99952 * 3 2 1 33 33 H 1.08997 * 109.47013 * 59.99707 * 3 2 1 34 34 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 35 35 H 1.07999 * 120.31242 * 359.97438 * 6 5 4 36 36 H 1.08002 * 120.75405 * 180.27894 * 7 6 5 37 37 H 0.96997 * 120.00268 * 359.97438 * 11 9 8 38 38 H 1.08004 * 125.80707 * 0.02562 * 13 12 11 39 39 H 0.97008 * 119.99343 * 180.02562 * 19 18 16 40 40 H 1.08002 * 126.24539 * 359.93773 * 24 12 11 41 41 H 1.08003 * 119.74056 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1452 -2.0695 1.1963 6 6 1.8000 -2.7914 0.0548 7 6 1.9325 -4.1536 0.0564 8 6 2.4036 -4.7792 1.2211 9 6 2.5578 -6.2454 1.2729 10 8 2.2755 -6.9212 0.3021 11 7 3.0116 -6.8360 2.3962 12 6 3.1590 -8.2328 2.4453 13 6 2.8670 -9.1338 1.4054 14 7 3.1330 -10.3458 1.8223 15 7 3.5950 -10.2683 3.1423 16 6 3.9726 -11.3276 3.9302 17 1 4.3150 -11.1545 4.9397 18 6 3.9142 -12.6225 3.4286 19 7 3.4974 -12.8328 2.2014 20 14 4.4272 -14.0635 4.5007 21 1 3.2484 -14.5666 5.2510 22 1 4.9693 -15.1491 3.6447 23 1 5.4715 -13.6204 5.4589 24 6 3.6032 -8.9527 3.5063 25 6 2.7246 -3.9941 2.3295 26 7 2.5881 -2.6851 2.2839 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 2.2490 -0.1823 1.9895 35 1 1.4358 -2.2802 -0.8240 36 1 1.6759 -4.7345 -0.8172 37 1 3.2371 -6.2970 3.1705 38 1 2.4900 -8.8702 0.4282 39 1 3.4563 -13.7366 1.8514 40 1 3.9078 -8.5571 4.4639 41 1 3.0877 -4.4638 3.2317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787271279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:00 Heat of formation + Delta-G solvation = 90.039682 kcal Electronic energy + Delta-G solvation = -24532.916607 eV Core-core repulsion = 20835.965187 eV Total energy + Delta-G solvation = -3696.951420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.66980 -39.69232 -38.43426 -37.16022 -34.23512 -33.21618 -32.87542 -32.12730 -30.26504 -29.45249 -27.76623 -27.42709 -24.94317 -24.12825 -23.34134 -21.53988 -20.93605 -20.35326 -19.35550 -18.22493 -17.55520 -17.08081 -16.67171 -15.52332 -15.41687 -15.21157 -14.94925 -14.82042 -14.50728 -14.14599 -13.90338 -13.67234 -13.33615 -13.03815 -13.02639 -12.97534 -12.77819 -12.68024 -12.29642 -11.87825 -11.64134 -11.50685 -11.38222 -11.23992 -10.91407 -10.51145 -10.45951 -10.09647 -9.92556 -9.78033 -9.12813 -9.09708 -8.75966 -8.03040 -7.94047 -6.63611 -6.52180 -4.18459 0.90562 1.27944 2.77261 2.94917 3.07360 3.12371 3.15539 3.64631 3.66612 3.92195 4.03342 4.26730 4.44796 4.52639 4.55036 4.66924 4.74533 4.81889 4.93356 5.05923 5.06279 5.08930 5.24721 5.28489 5.32100 5.42205 5.53107 5.58239 5.78096 5.91265 6.14431 6.29414 6.31942 6.52778 6.75104 6.95536 7.01322 7.17778 7.24793 7.28800 7.90082 7.93761 8.23664 8.33053 8.68081 8.91804 9.42228 9.71645 10.43891 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.052193 B = 0.002106 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.343203 B =13291.568977 C =13686.480596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.143 3.857 3 C -0.160 4.160 4 N -0.716 5.716 5 C 0.416 3.584 6 C -0.247 4.247 7 C 0.022 3.978 8 C -0.233 4.233 9 C 0.552 3.448 10 O -0.539 6.539 11 N -0.620 5.620 12 C -0.058 4.058 13 C -0.032 4.032 14 N -0.261 5.261 15 N -0.143 5.143 16 C -0.323 4.323 17 H 0.116 0.884 18 C 0.045 3.955 19 N -0.770 5.770 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.084 4.084 25 C 0.182 3.818 26 N -0.549 5.549 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.404 0.596 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.395 0.605 38 H 0.177 0.823 39 H 0.274 0.726 40 H 0.146 0.854 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.040 24.754 -1.744 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.038 3.962 3 C -0.218 4.218 4 N -0.348 5.348 5 C 0.180 3.820 6 C -0.272 4.272 7 C -0.004 4.004 8 C -0.241 4.241 9 C 0.339 3.661 10 O -0.417 6.417 11 N -0.262 5.262 12 C -0.164 4.164 13 C -0.207 4.207 14 N -0.092 5.092 15 N 0.089 4.911 16 C -0.455 4.455 17 H 0.134 0.866 18 C -0.172 4.172 19 N -0.397 5.397 20 Si 0.758 3.242 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.235 4.235 25 C 0.022 3.978 26 N -0.266 5.266 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.228 0.772 38 H 0.193 0.807 39 H 0.085 0.915 40 H 0.163 0.837 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.124 23.419 -2.376 23.745 hybrid contribution 0.210 0.307 0.821 0.901 sum -2.915 23.726 -1.555 23.955 Atomic orbital electron populations 1.22327 0.95338 1.02913 1.02462 1.21020 0.94050 0.93130 0.87996 1.22059 1.01943 0.94747 1.03060 1.44558 1.71050 1.02527 1.16674 1.18503 0.88674 0.85420 0.89402 1.21132 1.11899 0.94676 0.99458 1.21177 0.88886 0.93394 0.96980 1.20708 1.11640 0.94589 0.97187 1.17723 0.78949 0.86370 0.83097 1.90661 1.51132 1.64416 1.35489 1.42396 1.63468 1.05703 1.14602 1.17256 1.19818 0.81752 0.97526 1.24131 1.06864 0.89591 1.00155 1.78247 1.20862 1.18325 0.91741 1.44540 1.35216 1.02994 1.08341 1.19861 1.45262 0.83746 0.96616 0.86636 1.25641 0.95874 0.99311 0.96325 1.70225 1.33737 1.22352 1.13369 0.85831 0.79207 0.79763 0.79360 1.19619 1.20115 1.18829 1.21262 1.17149 0.85525 0.99520 1.22639 0.90731 0.87728 0.96654 1.67198 1.21282 1.11490 1.26641 0.92150 0.91438 0.91912 0.89763 0.91777 0.90727 0.91923 0.76021 0.84721 0.83709 0.77150 0.80662 0.91503 0.83664 0.82439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 9.37 37.16 0.35 -0.57 16 2 C 0.14 0.80 2.86 -67.93 -0.19 0.60 16 3 C -0.16 -0.62 9.38 37.16 0.35 -0.27 16 4 N -0.72 -5.65 5.23 -53.96 -0.28 -5.93 16 5 C 0.42 4.56 7.61 -155.27 -1.18 3.38 16 6 C -0.25 -2.64 8.71 -39.65 -0.35 -2.98 16 7 C 0.02 0.28 9.65 -39.29 -0.38 -0.10 16 8 C -0.23 -3.38 5.89 -104.82 -0.62 -4.00 16 9 C 0.55 10.22 7.74 -12.47 -0.10 10.12 16 10 O -0.54 -11.92 13.55 5.26 0.07 -11.85 16 11 N -0.62 -11.41 5.42 -10.94 -0.06 -11.47 16 12 C -0.06 -1.36 6.90 -83.86 -0.58 -1.94 16 13 C -0.03 -0.86 10.85 -17.03 -0.18 -1.04 16 14 N -0.26 -7.70 10.39 30.80 0.32 -7.38 16 15 N -0.14 -3.98 3.74 -11.41 -0.04 -4.03 16 16 C -0.32 -8.63 10.25 -14.82 -0.15 -8.78 16 17 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 18 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.78 11.81 55.49 0.66 -21.12 16 20 Si 0.93 19.13 29.55 -169.99 -5.02 14.10 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 24 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 25 C 0.18 2.29 10.71 -17.12 -0.18 2.11 16 26 N -0.55 -6.81 10.38 -12.13 -0.13 -6.94 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.43 7.56 -51.93 -0.39 0.03 16 30 H 0.08 0.47 6.45 -51.93 -0.34 0.13 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.40 2.89 8.72 -40.82 -0.36 2.54 16 35 H 0.14 1.10 5.98 -52.49 -0.31 0.78 16 36 H 0.15 1.84 7.73 -52.49 -0.41 1.44 16 37 H 0.39 5.61 6.87 -40.82 -0.28 5.33 16 38 H 0.18 4.67 5.91 -52.48 -0.31 4.36 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 41 H 0.16 1.60 6.41 -52.48 -0.34 1.27 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -34.79 348.87 -7.54 -42.33 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.81 Total: 11.59 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.50 Total: -4.56 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.47 Total: -56.87 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.79 -7.54 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787271279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.369 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds