Wall clock time and date at job start Tue Mar 31 2020 11:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 N 1.46506 * 109.47182 * 120.00044 * 2 1 3 5 5 C 1.38466 * 120.00291 * 84.72314 * 4 2 1 6 6 C 1.39405 * 119.53366 * 359.73187 * 5 4 2 7 7 C 1.36860 * 119.37456 * 179.70299 * 6 5 4 8 8 C 1.40349 * 118.49591 * 0.55783 * 7 6 5 9 9 C 1.47521 * 120.48007 * 179.74789 * 8 7 6 10 10 O 1.21614 * 120.00067 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00136 * 179.97438 * 9 8 7 12 12 C 1.40537 * 119.99892 * 180.02562 * 11 9 8 13 13 C 1.40663 * 126.08679 * 359.68760 * 12 11 9 14 14 N 1.30905 * 108.38764 * 179.87704 * 13 12 11 15 15 N 1.40065 * 108.41358 * 0.38325 * 14 13 12 16 16 C 1.37317 * 126.06748 * 179.73394 * 15 14 13 17 17 H 1.07998 * 119.99711 * 180.02562 * 16 15 14 18 18 C 1.38986 * 120.00431 * 0.02667 * 16 15 14 19 19 N 1.31295 * 119.99407 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00166 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47195 * 89.99668 * 20 18 16 22 22 H 1.48502 * 109.47184 * 209.99704 * 20 18 16 23 23 H 1.48494 * 109.47209 * 329.99920 * 20 18 16 24 24 C 1.35693 * 126.08554 * 179.97438 * 12 11 9 25 25 C 1.39572 * 119.04536 * 359.72467 * 8 7 6 26 26 N 1.31682 * 120.51894 * 359.97438 * 25 8 7 27 27 H 1.08997 * 109.47379 * 300.00069 * 1 2 3 28 28 H 1.09002 * 109.47097 * 60.00557 * 1 2 3 29 29 H 1.09007 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47189 * 239.99632 * 2 1 3 31 31 H 1.09005 * 109.47224 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47121 * 299.99952 * 3 2 1 33 33 H 1.08997 * 109.47013 * 59.99707 * 3 2 1 34 34 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 35 35 H 1.07999 * 120.31242 * 359.97438 * 6 5 4 36 36 H 1.08002 * 120.75405 * 180.27894 * 7 6 5 37 37 H 0.96997 * 120.00268 * 359.97438 * 11 9 8 38 38 H 1.08004 * 125.80707 * 0.02562 * 13 12 11 39 39 H 0.97008 * 119.99343 * 180.02562 * 19 18 16 40 40 H 1.08002 * 126.24539 * 359.93773 * 24 12 11 41 41 H 1.08003 * 119.74056 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1452 -2.0695 1.1963 6 6 1.8000 -2.7914 0.0548 7 6 1.9325 -4.1536 0.0564 8 6 2.4036 -4.7792 1.2211 9 6 2.5578 -6.2454 1.2729 10 8 2.2755 -6.9212 0.3021 11 7 3.0116 -6.8360 2.3962 12 6 3.1590 -8.2328 2.4453 13 6 2.8670 -9.1338 1.4054 14 7 3.1330 -10.3458 1.8223 15 7 3.5950 -10.2683 3.1423 16 6 3.9726 -11.3276 3.9302 17 1 4.3150 -11.1545 4.9397 18 6 3.9142 -12.6225 3.4286 19 7 3.4974 -12.8328 2.2014 20 14 4.4272 -14.0635 4.5007 21 1 3.2484 -14.5666 5.2510 22 1 4.9693 -15.1491 3.6447 23 1 5.4715 -13.6204 5.4589 24 6 3.6032 -8.9527 3.5063 25 6 2.7246 -3.9941 2.3295 26 7 2.5881 -2.6851 2.2839 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 2.2490 -0.1823 1.9895 35 1 1.4358 -2.2802 -0.8240 36 1 1.6759 -4.7345 -0.8172 37 1 3.2371 -6.2970 3.1705 38 1 2.4900 -8.8702 0.4282 39 1 3.4563 -13.7366 1.8514 40 1 3.9078 -8.5571 4.4639 41 1 3.0877 -4.4638 3.2317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787271279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:59 Heat of formation + Delta-G solvation = 65.908337 kcal Electronic energy + Delta-G solvation = -24533.963021 eV Core-core repulsion = 20835.965187 eV Total energy + Delta-G solvation = -3697.997834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.88078 -41.31254 -39.91336 -37.91262 -35.95496 -35.00097 -33.81633 -32.97573 -32.22001 -30.60712 -29.17991 -28.06823 -26.79507 -25.11364 -24.43239 -22.88599 -22.25439 -21.68336 -21.10613 -19.43970 -19.01085 -18.28567 -17.72653 -17.38895 -16.69854 -16.21354 -16.13499 -16.01655 -15.57373 -15.47023 -15.16174 -14.97484 -14.81761 -14.60489 -14.02875 -13.87794 -13.71877 -13.44541 -13.27984 -13.05219 -12.90272 -12.89349 -12.81493 -12.34938 -12.07424 -11.95181 -11.84621 -11.24539 -11.00511 -10.99851 -10.85042 -10.79608 -10.40276 -10.07802 -8.84780 -8.45115 -8.44816 -6.21754 -0.12949 0.33309 1.29111 1.41097 1.59006 1.67875 1.95960 2.05854 2.07924 2.32017 2.53013 2.94840 3.00136 3.11813 3.51644 3.85253 3.90827 3.92878 4.02648 4.11395 4.20309 4.34084 4.47239 4.60235 4.67392 4.77508 4.83074 4.90032 4.96323 5.00674 5.02527 5.08508 5.26645 5.29348 5.32459 5.37811 5.43773 5.48883 5.98052 5.99357 6.33855 6.50159 6.75112 6.76830 7.05911 7.40026 7.49263 7.70412 8.54537 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.052193 B = 0.002106 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.343203 B =13291.568977 C =13686.480596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.137 3.863 3 C -0.155 4.155 4 N -0.703 5.703 5 C 0.418 3.582 6 C -0.240 4.240 7 C 0.014 3.986 8 C -0.258 4.258 9 C 0.553 3.447 10 O -0.582 6.582 11 N -0.612 5.612 12 C -0.044 4.044 13 C -0.059 4.059 14 N -0.310 5.310 15 N -0.168 5.168 16 C -0.353 4.353 17 H 0.142 0.858 18 C -0.009 4.009 19 N -0.826 5.826 20 Si 1.020 2.980 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.244 1.244 24 C -0.079 4.079 25 C 0.194 3.806 26 N -0.562 5.562 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.161 0.839 36 H 0.139 0.861 37 H 0.417 0.583 38 H 0.167 0.833 39 H 0.276 0.724 40 H 0.190 0.810 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 27.520 0.016 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.033 3.967 3 C -0.213 4.213 4 N -0.333 5.333 5 C 0.180 3.820 6 C -0.265 4.265 7 C -0.012 4.012 8 C -0.266 4.266 9 C 0.343 3.657 10 O -0.463 6.463 11 N -0.257 5.257 12 C -0.150 4.150 13 C -0.235 4.235 14 N -0.142 5.142 15 N 0.063 4.937 16 C -0.484 4.484 17 H 0.159 0.841 18 C -0.220 4.220 19 N -0.454 5.454 20 Si 0.839 3.161 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.167 1.167 24 C -0.230 4.230 25 C 0.034 3.966 26 N -0.280 5.280 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.178 0.822 36 H 0.157 0.843 37 H 0.255 0.745 38 H 0.184 0.816 39 H 0.086 0.914 40 H 0.207 0.793 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.689 26.304 -0.597 26.448 hybrid contribution 0.006 -0.198 0.203 0.284 sum -2.682 26.105 -0.394 26.246 Atomic orbital electron populations 1.22302 0.94890 1.02186 1.03364 1.21269 0.94323 0.94054 0.87034 1.22033 1.01733 0.93436 1.04089 1.44811 1.69369 1.01439 1.17700 1.18809 0.87460 0.86636 0.89074 1.21299 1.11164 0.93659 1.00355 1.21242 0.89023 0.94445 0.96466 1.20373 1.15280 0.91922 0.99065 1.18382 0.77218 0.87959 0.82121 1.90637 1.52780 1.65846 1.37009 1.42296 1.63777 1.03753 1.15862 1.17329 1.17645 0.83862 0.96143 1.24173 1.08150 0.90264 1.00884 1.78141 1.22630 1.19879 0.93572 1.44841 1.36270 1.04607 1.08024 1.20626 1.45838 0.84236 0.97724 0.84078 1.26905 0.95077 1.02419 0.97586 1.70412 1.35871 1.23131 1.15952 0.84579 0.79238 0.75016 0.77273 1.18912 1.20260 1.16658 1.22004 1.15579 0.84343 1.01030 1.22887 0.89366 0.87776 0.96538 1.67314 1.22238 1.11174 1.27243 0.92222 0.89664 0.93403 0.89384 0.92055 0.89210 0.91431 0.75386 0.82158 0.84309 0.74509 0.81596 0.91440 0.79288 0.80303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.37 71.98 0.67 -0.68 16 2 C 0.14 1.12 2.86 44.99 0.13 1.25 16 3 C -0.16 -0.71 9.38 71.98 0.68 -0.03 16 4 N -0.70 -9.18 5.23 -324.62 -1.70 -10.88 16 5 C 0.42 8.21 7.61 133.25 1.01 9.22 16 6 C -0.24 -4.70 8.71 22.23 0.19 -4.50 16 7 C 0.01 0.36 9.65 22.46 0.22 0.58 16 8 C -0.26 -7.35 5.89 -19.99 -0.12 -7.47 16 9 C 0.55 20.77 7.74 86.69 0.67 21.45 16 10 O -0.58 -26.89 13.55 -4.08 -0.06 -26.95 16 11 N -0.61 -22.24 5.42 -306.78 -1.66 -23.90 16 12 C -0.04 -2.07 6.90 37.75 0.26 -1.81 16 13 C -0.06 -3.35 10.85 85.42 0.93 -2.43 16 14 N -0.31 -19.18 10.39 -56.46 -0.59 -19.76 16 15 N -0.17 -9.53 3.74 -190.00 -0.71 -10.24 16 16 C -0.35 -18.96 10.25 84.01 0.86 -18.10 16 17 H 0.14 6.53 7.83 -2.91 -0.02 6.51 16 18 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 19 N -0.83 -48.53 11.81 21.66 0.26 -48.27 16 20 Si 1.02 39.15 29.55 68.60 2.03 41.17 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 23 H -0.24 -8.44 7.11 99.48 0.71 -7.73 16 24 C -0.08 -3.73 11.49 83.38 0.96 -2.78 16 25 C 0.19 4.54 10.71 85.04 0.91 5.45 16 26 N -0.56 -12.70 10.38 -192.30 -2.00 -14.69 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 0.54 7.56 -2.38 -0.02 0.53 16 30 H 0.09 0.70 6.45 -2.38 -0.02 0.69 16 31 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.41 4.71 8.72 -92.70 -0.81 3.90 16 35 H 0.16 2.21 5.98 -2.91 -0.02 2.20 16 36 H 0.14 3.63 7.73 -2.91 -0.02 3.61 16 37 H 0.42 11.07 6.87 -92.71 -0.64 10.43 16 38 H 0.17 9.49 5.91 -2.91 -0.02 9.47 16 39 H 0.28 14.90 8.31 -92.70 -0.77 14.13 16 40 H 0.19 6.95 8.06 -2.91 -0.02 6.92 16 41 H 0.18 3.19 6.41 -2.91 -0.02 3.17 16 Total: -1.00 -79.92 348.87 3.07 -76.85 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.35 Total: 36.50 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 7.84 Total: 0.17 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -6.40 Total: -127.75 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.06 Total: -26.95 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.17 kcal Total: -79.92 3.07 -76.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787271279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.754 kcal (2) G-P(sol) polarization free energy of solvation -79.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds