Wall clock time and date at job start Tue Mar 31 2020 10:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30490 * 125.72202 * 2 1 4 4 C 1.34150 * 109.37120 * 180.02562 * 3 2 1 5 5 C 1.34626 * 108.21965 * 0.02562 * 4 3 2 6 6 N 1.35923 * 125.72525 * 180.02562 * 2 1 3 7 7 C 1.39840 * 126.48200 * 0.23585 * 6 2 1 8 8 N 1.32326 * 119.68638 * 55.10812 * 7 6 2 9 9 C 1.31874 * 121.64668 * 179.97438 * 8 7 6 10 10 C 1.38157 * 120.84319 * 0.02562 * 9 8 7 11 11 C 1.38756 * 119.28846 * 359.97438 * 10 9 8 12 12 C 1.38457 * 118.48317 * 359.74931 * 11 10 9 13 13 C 1.50703 * 120.44907 * 180.26504 * 12 11 10 14 14 N 1.46496 * 109.47417 * 254.01709 * 13 12 11 15 15 C 1.34779 * 120.00055 * 179.97438 * 14 13 12 16 16 O 1.21587 * 120.00120 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00124 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00102 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47460 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99326 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00457 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00145 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99849 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47245 * 89.99883 * 23 21 19 25 25 H 1.48502 * 109.47119 * 210.00320 * 23 21 19 26 26 H 1.48507 * 109.46896 * 329.99907 * 23 21 19 27 27 H 1.08997 * 109.47788 * 269.95913 * 1 2 3 28 28 H 1.09001 * 109.46851 * 29.96238 * 1 2 3 29 29 H 1.09000 * 109.46792 * 149.95890 * 1 2 3 30 30 H 1.08004 * 125.89167 * 179.97438 * 4 3 2 31 31 H 1.07998 * 126.58453 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.57971 * 179.97438 * 9 8 7 33 33 H 1.07994 * 120.35697 * 180.02562 * 10 9 8 34 34 H 1.08000 * 120.75940 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.46678 * 14.01955 * 13 12 11 36 36 H 1.09001 * 109.47153 * 134.01236 * 13 12 11 37 37 H 0.97003 * 120.00187 * 359.97438 * 14 13 12 38 38 H 0.96996 * 119.99744 * 359.97438 * 17 15 14 39 39 H 1.09002 * 109.47097 * 299.99887 * 18 17 15 40 40 H 1.09003 * 109.47309 * 59.99330 * 18 17 15 41 41 H 0.97001 * 119.99762 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2688 1.0594 0.0000 4 6 3.5561 0.6817 -0.0006 5 6 3.6000 -0.6638 -0.0015 6 7 2.3006 -1.1035 -0.0005 7 6 1.8733 -2.4350 -0.0057 8 7 1.0501 -2.8553 -0.9526 9 6 0.6233 -4.1024 -0.9949 10 6 1.0239 -5.0208 -0.0436 11 6 1.8869 -4.6196 0.9661 12 6 2.3216 -3.3051 0.9797 13 6 3.2641 -2.8234 2.0525 14 7 2.5321 -1.9851 3.0052 15 6 3.1758 -1.4404 4.0566 16 8 4.3638 -1.6451 4.2148 17 7 2.5023 -0.6696 4.9334 18 6 3.2020 -0.0771 6.0760 19 6 2.2304 0.7332 6.8949 20 1 1.1954 0.8003 6.5941 21 6 2.6631 1.3895 8.0276 22 7 1.8153 2.0970 8.7419 23 14 4.4540 1.2750 8.5467 24 1 5.2237 2.3768 7.9154 25 1 4.5492 1.3879 10.0243 26 1 5.0125 -0.0308 8.1130 27 1 -0.3634 -0.0007 1.0276 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 4.4100 1.3431 -0.0011 31 1 4.4877 -1.2789 -0.0018 32 1 -0.0487 -4.4095 -1.7827 33 1 0.6699 -6.0401 -0.0860 34 1 2.2149 -5.3176 1.7221 35 1 3.6889 -3.6808 2.5746 36 1 4.0656 -2.2415 1.5975 37 1 1.5842 -1.8221 2.8793 38 1 1.5544 -0.5066 4.8075 39 1 3.6257 -0.8693 6.6932 40 1 4.0018 0.5703 5.7163 41 1 2.1197 2.5584 9.5390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787363861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:52 Heat of formation + Delta-G solvation = 83.128736 kcal Electronic energy + Delta-G solvation = -25932.171556 eV Core-core repulsion = 22234.920454 eV Total energy + Delta-G solvation = -3697.251101 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.56147 -40.56606 -39.28172 -35.57022 -34.39377 -34.16013 -32.81989 -32.19799 -31.77615 -30.46891 -28.14470 -27.10965 -26.18688 -24.33390 -22.90967 -21.90363 -21.46900 -20.49630 -20.31494 -18.40965 -18.24922 -17.39242 -16.57913 -16.18411 -15.97749 -15.34681 -15.12577 -14.74705 -14.67279 -14.45999 -14.18345 -13.98138 -13.74098 -13.46487 -13.24527 -13.17518 -13.05264 -12.76157 -12.46630 -12.34356 -12.26684 -11.93156 -10.96701 -10.74387 -10.68328 -10.45437 -10.34270 -9.94978 -9.87515 -9.65164 -9.44146 -9.22911 -8.95325 -8.73332 -8.41196 -8.02329 -6.18001 -4.19820 0.23917 0.57794 1.88581 2.25366 2.96020 3.10469 3.29575 3.34337 3.39734 3.45006 3.76292 3.86956 4.16860 4.23948 4.33253 4.36745 4.40459 4.47389 4.84526 4.90794 4.99844 5.15017 5.17641 5.23161 5.32409 5.42411 5.48600 5.52302 5.66198 5.69145 5.78481 5.92309 6.03782 6.59277 6.64644 6.72547 7.06055 7.13503 7.22649 7.27457 7.39922 7.53240 7.99919 8.29251 8.67940 8.82347 9.17219 9.42901 10.94034 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.003529 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.188032 B = 7932.407530 C = 8536.006873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.236 3.764 3 N -0.481 5.481 4 C -0.010 4.010 5 C -0.045 4.045 6 N -0.413 5.413 7 C 0.349 3.651 8 N -0.484 5.484 9 C 0.124 3.876 10 C -0.169 4.169 11 C -0.041 4.041 12 C -0.141 4.141 13 C 0.182 3.818 14 N -0.749 5.749 15 C 0.699 3.301 16 O -0.602 6.602 17 N -0.720 5.720 18 C 0.240 3.760 19 C -0.542 4.542 20 H 0.079 0.921 21 C 0.078 3.922 22 N -0.893 5.893 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.261 1.261 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.391 0.609 38 H 0.392 0.608 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 -15.397 -21.572 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.025 4.025 3 N -0.199 5.199 4 C -0.156 4.156 5 C -0.174 4.174 6 N -0.097 5.097 7 C 0.122 3.878 8 N -0.194 5.194 9 C -0.034 4.034 10 C -0.189 4.189 11 C -0.068 4.068 12 C -0.146 4.146 13 C 0.056 3.944 14 N -0.406 5.406 15 C 0.399 3.601 16 O -0.481 6.481 17 N -0.371 5.371 18 C 0.117 3.883 19 C -0.580 4.580 20 H 0.097 0.903 21 C -0.126 4.126 22 N -0.530 5.530 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.185 1.185 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.192 0.808 31 H 0.193 0.807 32 H 0.185 0.815 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.223 0.777 38 H 0.225 0.775 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.655 -14.104 -21.840 26.134 hybrid contribution 0.664 -1.277 0.821 1.657 sum -1.991 -15.381 -21.019 26.122 Atomic orbital electron populations 1.20272 0.84785 1.04439 1.03647 1.23647 0.95678 0.80108 1.03057 1.70310 1.02329 1.27497 1.19738 1.22309 0.94843 0.92457 1.05989 1.22625 0.85848 0.96785 1.12119 1.42703 1.07134 1.03320 1.56574 1.17960 0.94707 0.83998 0.91150 1.67193 1.11731 1.18508 1.21963 1.22711 0.96345 0.86774 0.97561 1.22293 0.98850 1.01918 0.95815 1.21594 0.93474 0.94378 0.97349 1.20804 1.01781 0.94797 0.97219 1.19929 0.92179 0.95164 0.87084 1.45004 1.12343 1.55631 1.27626 1.16021 0.85269 0.79278 0.79540 1.90863 1.13842 1.66453 1.76979 1.45375 1.12707 1.51549 1.27491 1.19360 0.93215 0.93008 0.82698 1.21083 0.96956 1.30650 1.09285 0.90339 1.24774 0.97913 0.94196 0.95698 1.69883 1.34904 1.31539 1.16715 0.86814 0.85161 0.79800 0.77897 1.19801 1.20945 1.18487 0.90143 0.88948 0.90161 0.80825 0.80717 0.81491 0.83579 0.83312 0.90294 0.90232 0.77655 0.77541 0.95931 0.96353 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.18 36.00 0.37 -0.41 16 2 C 0.24 3.26 7.89 -154.62 -1.22 2.04 16 3 N -0.48 -7.62 11.24 -10.62 -0.12 -7.74 16 4 C -0.01 -0.15 11.85 -17.82 -0.21 -0.36 16 5 C -0.05 -0.57 9.50 -16.44 -0.16 -0.73 16 6 N -0.41 -5.18 2.65 -59.55 -0.16 -5.34 16 7 C 0.35 3.75 6.51 -154.35 -1.00 2.74 16 8 N -0.48 -4.70 9.26 -12.29 -0.11 -4.81 16 9 C 0.12 0.78 11.18 -17.56 -0.20 0.59 16 10 C -0.17 -0.85 10.11 -39.42 -0.40 -1.25 16 11 C -0.04 -0.27 9.80 -39.31 -0.39 -0.66 16 12 C -0.14 -1.33 5.26 -104.30 -0.55 -1.88 16 13 C 0.18 2.17 5.21 -5.19 -0.03 2.14 16 14 N -0.75 -10.88 5.55 -66.41 -0.37 -11.25 16 15 C 0.70 13.87 8.57 -86.92 -0.74 13.12 16 16 O -0.60 -14.10 16.34 5.29 0.09 -14.02 16 17 N -0.72 -15.23 5.55 -66.41 -0.37 -15.59 16 18 C 0.24 6.08 4.50 -5.20 -0.02 6.06 16 19 C -0.54 -15.19 9.83 -34.44 -0.34 -15.52 16 20 H 0.08 2.29 7.84 -52.48 -0.41 1.88 16 21 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 22 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 23 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.78 6.89 -51.93 -0.36 0.42 16 30 H 0.17 2.09 8.06 -52.48 -0.42 1.67 16 31 H 0.18 1.81 7.16 -52.49 -0.38 1.43 16 32 H 0.17 0.54 8.06 -52.48 -0.42 0.12 16 33 H 0.15 0.31 8.06 -52.49 -0.42 -0.12 16 34 H 0.15 0.71 8.04 -52.49 -0.42 0.29 16 35 H 0.08 0.91 7.99 -51.93 -0.41 0.50 16 36 H 0.08 1.03 5.40 -51.93 -0.28 0.75 16 37 H 0.39 5.07 8.48 -40.82 -0.35 4.72 16 38 H 0.39 7.44 8.33 -40.82 -0.34 7.10 16 39 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 40 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -36.50 352.33 -9.61 -46.11 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.00 Total: 8.29 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -4.99 Total: 8.02 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -0.36 Total: -70.85 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.50 -9.61 -46.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.242 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds