Wall clock time and date at job start Tue Mar 31 2020 10:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30481 * 125.71979 * 2 1 4 4 C 1.34151 * 109.37000 * 179.97438 * 3 2 1 5 5 C 1.34615 * 108.22047 * 0.02562 * 4 3 2 6 6 N 1.35917 * 125.72141 * 179.68554 * 2 1 3 7 7 C 1.39838 * 126.48756 * 0.02713 * 6 2 1 8 8 C 1.38942 * 119.68378 * 179.72282 * 7 6 2 9 9 C 1.38406 * 119.10224 * 179.79760 * 8 7 6 10 10 C 1.38802 * 118.48554 * 0.46604 * 9 8 7 11 11 C 1.50699 * 120.35702 * 179.72818 * 10 9 8 12 12 N 1.46503 * 109.47226 * 270.03109 * 11 10 9 13 13 C 1.34783 * 119.99957 * 179.97438 * 12 11 10 14 14 O 1.21591 * 119.99784 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99941 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99723 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46861 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00005 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00267 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99435 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00410 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47003 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47378 * 119.99670 * 21 19 17 24 24 H 1.48504 * 109.47070 * 239.99889 * 21 19 17 25 25 C 1.38109 * 119.29413 * 359.75585 * 10 9 8 26 26 N 1.31912 * 120.83751 * 0.02562 * 25 10 9 27 27 H 1.09001 * 109.46953 * 90.02383 * 1 2 3 28 28 H 1.09000 * 109.47318 * 210.01981 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.02612 * 1 2 3 30 30 H 1.08000 * 125.89046 * 179.97438 * 4 3 2 31 31 H 1.08001 * 126.59098 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.44638 * 0.02562 * 8 7 6 33 33 H 1.08002 * 120.75762 * 180.24742 * 9 8 7 34 34 H 1.09007 * 109.46990 * 30.02695 * 11 10 9 35 35 H 1.08999 * 109.47678 * 150.02328 * 11 10 9 36 36 H 0.96993 * 119.99897 * 359.97438 * 12 11 10 37 37 H 0.96995 * 119.99750 * 359.97438 * 15 13 12 38 38 H 1.09000 * 109.47176 * 299.99716 * 16 15 13 39 39 H 1.08996 * 109.46890 * 60.00353 * 16 15 13 40 40 H 0.97009 * 119.99724 * 180.02562 * 20 19 17 41 41 H 1.07997 * 119.58372 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2688 1.0594 0.0000 4 6 3.5561 0.6817 0.0006 5 6 3.6000 -0.6637 0.0004 6 7 2.3006 -1.1034 0.0061 7 6 1.8733 -2.4349 0.0128 8 6 2.8125 -3.4589 0.0127 9 6 2.3762 -4.7724 0.0237 10 6 1.0098 -5.0161 0.0246 11 6 0.4884 -6.4300 0.0302 12 7 0.3202 -6.8940 -1.3491 13 6 -0.1377 -8.1385 -1.5904 14 8 -0.4107 -8.8763 -0.6632 15 7 -0.2929 -8.5652 -2.8594 16 6 -0.7901 -9.9181 -3.1216 17 6 -0.8705 -10.1441 -4.6094 18 1 -0.5807 -9.3584 -5.2913 19 6 -1.3151 -11.3536 -5.1000 20 7 -1.6684 -12.3101 -4.2695 21 14 -1.4141 -11.6340 -6.9441 22 1 -0.9625 -10.4112 -7.6556 23 1 -0.5418 -12.7759 -7.3188 24 1 -2.8173 -11.9374 -7.3240 25 6 0.1330 -3.9491 0.0197 26 7 0.5789 -2.7076 0.0137 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3633 0.8902 0.5134 30 1 4.4099 1.3431 0.0003 31 1 4.4878 -1.2789 0.0003 32 1 3.8685 -3.2329 0.0078 33 1 3.0829 -5.5891 0.0279 34 1 1.1975 -7.0767 0.5472 35 1 -0.4726 -6.4610 0.5438 36 1 0.5383 -6.3057 -2.0887 37 1 -0.0755 -7.9765 -3.5990 38 1 -0.1104 -10.6469 -2.6800 39 1 -1.7810 -10.0326 -2.6823 40 1 -1.9808 -13.1612 -4.6146 41 1 -0.9311 -4.1333 0.0199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787371705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:54 Heat of formation + Delta-G solvation = 75.380375 kcal Electronic energy + Delta-G solvation = -24264.860508 eV Core-core repulsion = 20567.273412 eV Total energy + Delta-G solvation = -3697.587096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.80289 -40.69447 -39.19352 -35.74741 -34.25511 -33.92019 -33.21119 -32.34081 -31.81760 -30.66152 -27.62592 -27.23117 -25.92526 -24.53926 -23.26509 -22.34247 -21.31864 -20.65621 -20.29225 -18.56113 -18.27792 -17.06281 -16.53317 -16.33676 -15.82303 -15.61643 -15.26844 -14.86704 -14.70898 -14.55809 -14.21736 -14.12515 -13.80340 -13.55884 -13.38578 -13.18306 -13.02241 -12.91794 -12.47806 -12.19784 -11.99685 -11.75361 -11.12027 -10.96051 -10.93794 -10.55079 -10.48153 -10.33966 -9.99771 -9.58787 -9.39079 -9.10842 -8.91579 -8.74185 -8.72013 -7.83108 -6.18831 -4.25420 0.13165 0.62917 1.73498 1.98703 2.71312 3.08025 3.21678 3.28886 3.31666 3.50810 3.70496 3.84606 4.06584 4.16014 4.25865 4.30395 4.33042 4.41465 4.69660 4.89333 4.99873 5.04937 5.06465 5.17519 5.30519 5.33938 5.37759 5.47973 5.60832 5.69863 5.76240 5.87544 5.95448 6.28776 6.66751 6.78856 7.02574 7.19243 7.44617 7.50058 7.52557 7.66960 7.84137 7.99124 8.71768 8.86888 9.25670 9.43164 10.91368 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024056 B = 0.002045 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.694125 B =13687.973862 C =14096.786152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.245 3.755 3 N -0.491 5.491 4 C -0.012 4.012 5 C -0.061 4.061 6 N -0.410 5.410 7 C 0.347 3.653 8 C -0.180 4.180 9 C -0.027 4.027 10 C -0.161 4.161 11 C 0.188 3.812 12 N -0.756 5.756 13 C 0.693 3.307 14 O -0.599 6.599 15 N -0.728 5.728 16 C 0.266 3.734 17 C -0.542 4.542 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.153 3.847 26 N -0.497 5.497 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.177 0.823 31 H 0.180 0.820 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.392 0.608 37 H 0.387 0.613 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.265 0.735 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 22.617 9.366 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 N -0.210 5.210 4 C -0.157 4.157 5 C -0.189 4.189 6 N -0.092 5.092 7 C 0.119 3.881 8 C -0.203 4.203 9 C -0.053 4.053 10 C -0.164 4.164 11 C 0.062 3.938 12 N -0.414 5.414 13 C 0.393 3.607 14 O -0.478 6.478 15 N -0.380 5.380 16 C 0.145 3.855 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.005 4.005 26 N -0.208 5.208 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.194 0.806 31 H 0.198 0.802 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.225 0.775 37 H 0.219 0.781 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.610 23.118 10.224 26.704 hybrid contribution 1.286 -1.163 -1.702 2.430 sum 9.896 21.955 8.521 25.545 Atomic orbital electron populations 1.20476 0.83838 1.04855 1.04037 1.23967 0.96332 0.79977 1.01402 1.70374 1.02321 1.27862 1.20415 1.22403 0.94999 0.92522 1.05808 1.22698 0.86094 0.96897 1.13219 1.42995 1.07466 1.04146 1.54606 1.18258 0.90125 0.83039 0.96661 1.21598 1.00538 0.92219 1.05898 1.21527 0.95565 0.96220 0.92037 1.21064 0.94236 0.97397 1.03688 1.19793 1.01592 0.88197 0.84173 1.45194 1.73679 1.15266 1.07303 1.16131 0.78794 0.81104 0.84659 1.90889 1.58131 1.55370 1.43424 1.45737 1.69165 1.18994 1.04081 1.19002 0.94731 0.75831 0.95899 1.21256 1.45885 0.99857 0.91058 0.91912 1.24950 0.94874 0.95667 0.98583 1.69987 1.42969 1.04792 1.34464 0.86356 0.77838 0.78261 0.84406 1.19687 1.20801 1.20786 1.22683 1.00835 0.85180 0.91776 1.67145 1.13715 1.23925 1.16022 0.90105 0.88031 0.89857 0.80570 0.80249 0.83925 0.83261 0.90548 0.90367 0.77511 0.78130 0.95693 0.95657 0.92490 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 9.71 36.01 0.35 -0.29 16 2 C 0.24 2.69 7.90 -154.62 -1.22 1.47 16 3 N -0.49 -5.84 11.24 -10.63 -0.12 -5.95 16 4 C -0.01 -0.11 11.85 -17.82 -0.21 -0.32 16 5 C -0.06 -0.49 10.84 -16.44 -0.18 -0.67 16 6 N -0.41 -4.08 2.98 -59.55 -0.18 -4.25 16 7 C 0.35 3.22 7.50 -154.36 -1.16 2.07 16 8 C -0.18 -1.29 9.51 -39.26 -0.37 -1.67 16 9 C -0.03 -0.19 9.85 -39.31 -0.39 -0.57 16 10 C -0.16 -1.28 5.27 -104.46 -0.55 -1.83 16 11 C 0.19 1.96 5.82 -5.19 -0.03 1.93 16 12 N -0.76 -9.81 5.55 -66.41 -0.37 -10.18 16 13 C 0.69 13.31 8.57 -86.92 -0.74 12.56 16 14 O -0.60 -14.15 16.34 5.29 0.09 -14.07 16 15 N -0.73 -14.87 5.55 -66.41 -0.37 -15.24 16 16 C 0.27 6.95 5.43 -5.19 -0.03 6.92 16 17 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.88 -25.76 13.29 55.43 0.74 -25.02 16 21 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.15 1.23 10.85 -17.56 -0.19 1.04 16 26 N -0.50 -4.61 7.30 -12.29 -0.09 -4.70 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 0.87 6.02 -51.93 -0.31 0.56 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.18 0.82 7.13 -52.49 -0.37 0.44 16 32 H 0.14 0.70 6.80 -52.49 -0.36 0.34 16 33 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.08 0.83 8.10 -51.92 -0.42 0.41 16 35 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.39 4.15 8.48 -40.82 -0.35 3.80 16 37 H 0.39 6.73 8.34 -40.82 -0.34 6.39 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -35.25 356.54 -10.15 -45.40 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.06 Total: 5.61 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -5.14 Total: 7.46 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.39 Total: -65.36 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.07 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.25 -10.15 -45.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.784 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds