Wall clock time and date at job start Tue Mar 31 2020 10:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30481 * 125.71979 * 2 1 4 4 C 1.34151 * 109.37000 * 179.97438 * 3 2 1 5 5 C 1.34615 * 108.22047 * 0.02562 * 4 3 2 6 6 N 1.35917 * 125.72141 * 179.68554 * 2 1 3 7 7 C 1.39838 * 126.48756 * 0.02713 * 6 2 1 8 8 C 1.38942 * 119.68378 * 179.72282 * 7 6 2 9 9 C 1.38406 * 119.10224 * 179.79760 * 8 7 6 10 10 C 1.38802 * 118.48554 * 0.46604 * 9 8 7 11 11 C 1.50699 * 120.35702 * 179.72818 * 10 9 8 12 12 N 1.46503 * 109.47226 * 270.03109 * 11 10 9 13 13 C 1.34783 * 119.99957 * 179.97438 * 12 11 10 14 14 O 1.21591 * 119.99784 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99941 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99723 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46861 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00005 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00267 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99435 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00410 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47003 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47378 * 119.99670 * 21 19 17 24 24 H 1.48504 * 109.47070 * 239.99889 * 21 19 17 25 25 C 1.38109 * 119.29413 * 359.75585 * 10 9 8 26 26 N 1.31912 * 120.83751 * 0.02562 * 25 10 9 27 27 H 1.09001 * 109.46953 * 90.02383 * 1 2 3 28 28 H 1.09000 * 109.47318 * 210.01981 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.02612 * 1 2 3 30 30 H 1.08000 * 125.89046 * 179.97438 * 4 3 2 31 31 H 1.08001 * 126.59098 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.44638 * 0.02562 * 8 7 6 33 33 H 1.08002 * 120.75762 * 180.24742 * 9 8 7 34 34 H 1.09007 * 109.46990 * 30.02695 * 11 10 9 35 35 H 1.08999 * 109.47678 * 150.02328 * 11 10 9 36 36 H 0.96993 * 119.99897 * 359.97438 * 12 11 10 37 37 H 0.96995 * 119.99750 * 359.97438 * 15 13 12 38 38 H 1.09000 * 109.47176 * 299.99716 * 16 15 13 39 39 H 1.08996 * 109.46890 * 60.00353 * 16 15 13 40 40 H 0.97009 * 119.99724 * 180.02562 * 20 19 17 41 41 H 1.07997 * 119.58372 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2688 1.0594 0.0000 4 6 3.5561 0.6817 0.0006 5 6 3.6000 -0.6637 0.0004 6 7 2.3006 -1.1034 0.0061 7 6 1.8733 -2.4349 0.0128 8 6 2.8125 -3.4589 0.0127 9 6 2.3762 -4.7724 0.0237 10 6 1.0098 -5.0161 0.0246 11 6 0.4884 -6.4300 0.0302 12 7 0.3202 -6.8940 -1.3491 13 6 -0.1377 -8.1385 -1.5904 14 8 -0.4107 -8.8763 -0.6632 15 7 -0.2929 -8.5652 -2.8594 16 6 -0.7901 -9.9181 -3.1216 17 6 -0.8705 -10.1441 -4.6094 18 1 -0.5807 -9.3584 -5.2913 19 6 -1.3151 -11.3536 -5.1000 20 7 -1.6684 -12.3101 -4.2695 21 14 -1.4141 -11.6340 -6.9441 22 1 -0.9625 -10.4112 -7.6556 23 1 -0.5418 -12.7759 -7.3188 24 1 -2.8173 -11.9374 -7.3240 25 6 0.1330 -3.9491 0.0197 26 7 0.5789 -2.7076 0.0137 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3633 0.8902 0.5134 30 1 4.4099 1.3431 0.0003 31 1 4.4878 -1.2789 0.0003 32 1 3.8685 -3.2329 0.0078 33 1 3.0829 -5.5891 0.0279 34 1 1.1975 -7.0767 0.5472 35 1 -0.4726 -6.4610 0.5438 36 1 0.5383 -6.3057 -2.0887 37 1 -0.0755 -7.9765 -3.5990 38 1 -0.1104 -10.6469 -2.6800 39 1 -1.7810 -10.0326 -2.6823 40 1 -1.9808 -13.1612 -4.6146 41 1 -0.9311 -4.1333 0.0199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787371705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:53 Heat of formation + Delta-G solvation = 51.720706 kcal Electronic energy + Delta-G solvation = -24265.886468 eV Core-core repulsion = 20567.273412 eV Total energy + Delta-G solvation = -3698.613056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.46895 -41.41394 -40.65742 -36.79343 -35.99672 -34.91163 -34.32602 -33.85491 -32.48373 -31.54525 -29.26449 -28.03714 -26.98757 -25.14012 -24.68416 -23.61379 -21.97720 -21.85758 -21.33374 -19.87174 -19.18342 -18.15845 -17.70720 -17.46690 -17.01988 -16.53054 -16.42319 -16.24409 -16.01042 -15.28121 -15.17178 -14.91087 -14.75995 -14.64258 -14.41691 -14.30036 -14.02006 -14.00475 -13.58563 -13.55231 -13.14932 -12.90048 -12.81230 -12.73539 -12.20817 -11.85333 -11.42826 -11.29680 -11.26363 -11.02727 -10.80134 -10.63745 -10.25921 -9.81333 -9.56815 -9.37960 -8.27229 -6.42902 -0.52217 0.06845 1.06508 1.36091 1.44764 1.45572 1.58696 1.95732 2.01555 2.27712 2.40168 2.66550 3.08060 3.09176 3.46226 3.52862 3.57537 3.62072 3.75097 3.84602 4.05904 4.34371 4.41622 4.49987 4.64507 4.69718 4.73033 4.75086 4.85050 5.02377 5.11005 5.11815 5.22580 5.30804 5.34493 5.48880 5.51798 5.68181 5.69378 5.87683 6.11420 6.25926 6.57306 6.69414 6.98787 7.26384 7.32297 7.74686 8.85079 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024056 B = 0.002045 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.694125 B =13687.973862 C =14096.786152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.218 3.782 3 N -0.524 5.524 4 C -0.035 4.035 5 C -0.052 4.052 6 N -0.415 5.415 7 C 0.329 3.671 8 C -0.172 4.172 9 C -0.020 4.020 10 C -0.158 4.158 11 C 0.189 3.811 12 N -0.729 5.729 13 C 0.694 3.306 14 O -0.646 6.646 15 N -0.724 5.724 16 C 0.285 3.715 17 C -0.553 4.553 18 H 0.083 0.917 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.984 3.016 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.151 3.849 26 N -0.511 5.511 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.199 0.801 31 H 0.217 0.783 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.408 0.592 37 H 0.404 0.596 38 H -0.013 1.013 39 H -0.013 1.013 40 H 0.268 0.732 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.487 23.693 8.086 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.043 4.043 3 N -0.243 5.243 4 C -0.179 4.179 5 C -0.180 4.180 6 N -0.098 5.098 7 C 0.102 3.898 8 C -0.194 4.194 9 C -0.047 4.047 10 C -0.161 4.161 11 C 0.065 3.935 12 N -0.387 5.387 13 C 0.393 3.607 14 O -0.529 6.529 15 N -0.378 5.378 16 C 0.162 3.838 17 C -0.591 4.591 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.807 3.193 22 H -0.178 1.178 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.007 4.007 26 N -0.223 5.223 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.216 0.784 31 H 0.234 0.766 32 H 0.188 0.812 33 H 0.188 0.812 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.244 0.756 37 H 0.239 0.761 38 H 0.005 0.995 39 H 0.005 0.995 40 H 0.077 0.923 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 10.310 24.290 8.939 27.861 hybrid contribution 0.818 -1.430 -1.203 2.040 sum 11.129 22.860 7.736 26.576 Atomic orbital electron populations 1.20457 0.83097 1.04987 1.04119 1.24285 0.97141 0.80447 1.02459 1.70328 1.03775 1.28901 1.21272 1.22911 0.94807 0.93741 1.06449 1.23331 0.86492 0.97019 1.11129 1.43163 1.07980 1.04251 1.54370 1.18571 0.90663 0.83215 0.97391 1.21851 1.01534 0.91468 1.04563 1.21758 0.95289 0.96833 0.90780 1.20776 0.94874 0.95622 1.04800 1.19870 1.01735 0.89635 0.82284 1.44945 1.71492 1.13003 1.09265 1.16256 0.78516 0.82450 0.83451 1.90859 1.60049 1.57327 1.44648 1.45310 1.69506 1.17458 1.05487 1.18406 0.91898 0.77897 0.95649 1.21633 1.45573 1.00549 0.91333 0.89928 1.26037 0.94193 0.95325 1.04080 1.70143 1.44034 1.05501 1.37149 0.85124 0.77768 0.78683 0.77698 1.17767 1.20501 1.20562 1.22873 1.01525 0.84866 0.91402 1.67135 1.14258 1.24356 1.16562 0.89996 0.88127 0.89436 0.78385 0.76606 0.81246 0.81234 0.90586 0.90652 0.75578 0.76083 0.99484 0.99532 0.92282 0.79921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 9.71 71.24 0.69 -0.49 16 2 C 0.22 4.72 7.90 137.86 1.09 5.81 16 3 N -0.52 -12.29 11.24 -187.53 -2.11 -14.40 16 4 C -0.03 -0.60 11.85 83.51 0.99 0.39 16 5 C -0.05 -0.72 10.84 83.03 0.90 0.18 16 6 N -0.42 -7.61 2.98 -342.31 -1.02 -8.63 16 7 C 0.33 5.43 7.50 132.76 1.00 6.43 16 8 C -0.17 -1.90 9.51 22.48 0.21 -1.68 16 9 C -0.02 -0.22 9.85 22.44 0.22 0.01 16 10 C -0.16 -2.15 5.27 -19.76 -0.10 -2.25 16 11 C 0.19 3.63 5.82 85.63 0.50 4.13 16 12 N -0.73 -17.72 5.55 -482.27 -2.68 -20.40 16 13 C 0.69 26.48 8.57 179.05 1.53 28.02 16 14 O -0.65 -31.20 16.34 -4.00 -0.07 -31.27 16 15 N -0.72 -29.52 5.55 -482.29 -2.68 -32.20 16 16 C 0.28 15.33 5.43 85.63 0.46 15.79 16 17 C -0.55 -29.48 9.28 25.60 0.24 -29.24 16 18 H 0.08 3.98 7.60 -2.91 -0.02 3.96 16 19 C 0.00 0.18 5.46 84.66 0.46 0.64 16 20 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 21 Si 0.98 41.67 29.54 68.60 2.03 43.70 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 25 C 0.15 2.17 10.85 84.65 0.92 3.09 16 26 N -0.51 -8.77 7.30 -192.80 -1.41 -10.18 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.10 1.72 6.02 -2.39 -0.01 1.71 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.20 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.22 1.10 7.13 -2.91 -0.02 1.08 16 32 H 0.17 0.88 6.80 -2.91 -0.02 0.86 16 33 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.08 1.54 8.10 -2.38 -0.02 1.52 16 35 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 36 H 0.41 7.57 8.48 -92.71 -0.79 6.78 16 37 H 0.40 13.47 8.34 -92.71 -0.77 12.70 16 38 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 39 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 40 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 41 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -79.15 356.54 0.99 -78.16 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -0.47 Total: 19.38 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 9.11 Total: 30.82 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -9.61 Total: -140.80 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.07 Total: -31.27 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -79.15 0.99 -78.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.883 kcal (2) G-P(sol) polarization free energy of solvation -79.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds