Wall clock time and date at job start Tue Mar 31 2020 10:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47673 * 2 1 4 4 N 1.31796 * 119.03807 * 89.99559 * 3 2 1 5 5 C 1.32256 * 120.89635 * 180.02562 * 4 3 2 6 6 C 1.39249 * 119.01444 * 0.02562 * 5 4 3 7 7 N 1.39925 * 120.86965 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00544 * 34.94677 * 7 6 5 9 9 O 1.21614 * 119.99684 * 355.03309 * 8 7 6 10 10 C 1.47401 * 120.00400 * 175.31351 * 8 7 6 11 11 C 1.41302 * 126.41271 * 359.41139 * 10 8 7 12 12 N 1.30452 * 108.01926 * 179.88321 * 11 10 8 13 13 N 1.39926 * 108.90430 * 0.37944 * 12 11 10 14 14 C 1.46499 * 125.75562 * 179.75412 * 13 12 11 15 15 C 1.50701 * 109.47097 * 269.99865 * 14 13 12 16 16 H 1.07996 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99940 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99774 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99766 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47147 * 60.00258 * 19 17 15 21 21 H 1.48504 * 109.46737 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47082 * 299.99827 * 19 17 15 23 23 C 1.34268 * 108.49451 * 359.75559 * 13 12 11 24 24 C 1.50700 * 126.29748 * 179.97438 * 23 13 12 25 25 C 1.39245 * 118.25634 * 0.24536 * 6 5 4 26 26 N 1.31796 * 119.03653 * 270.02511 * 3 2 1 27 27 H 1.08996 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46896 * 300.00095 * 1 2 3 29 29 H 1.09005 * 109.46868 * 59.99521 * 1 2 3 30 30 H 1.09004 * 109.47161 * 239.99883 * 2 1 3 31 31 H 1.09005 * 109.46868 * 120.00479 * 2 1 3 32 32 H 1.08004 * 120.49306 * 180.02562 * 5 4 3 33 33 H 0.96999 * 119.99505 * 214.94647 * 7 6 5 34 34 H 1.07997 * 125.98910 * 0.03453 * 11 10 8 35 35 H 1.08993 * 109.47198 * 30.00447 * 14 13 12 36 36 H 1.09005 * 109.47134 * 150.00401 * 14 13 12 37 37 H 0.96999 * 119.99462 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.46841 * 269.97507 * 24 23 13 39 39 H 1.08998 * 109.46748 * 29.97464 * 24 23 13 40 40 H 1.09001 * 109.47240 * 149.97857 * 24 23 13 41 41 H 1.07993 * 120.49203 * 179.72475 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2457 2.0239 1.1523 5 6 2.6859 3.2703 1.1952 6 6 2.9232 3.9442 0.0000 7 7 3.3887 5.2638 0.0001 8 6 4.2437 5.6768 0.9565 9 8 4.5403 4.9310 1.8702 10 6 4.8146 7.0345 0.8985 11 6 4.5698 8.0055 -0.0984 12 7 5.2534 9.0748 0.2032 13 7 5.9647 8.8398 1.3850 14 6 6.8554 9.7927 2.0520 15 6 8.2566 9.6254 1.5230 16 1 8.4629 8.8839 0.7655 17 6 9.2750 10.4200 2.0054 18 7 9.0237 11.3234 2.9276 19 14 11.0117 10.2131 1.3492 20 1 11.0214 10.4665 -0.1139 21 1 11.9146 11.1790 2.0254 22 1 11.4797 8.8292 1.6151 23 6 5.6933 7.5936 1.8048 24 6 6.2465 6.9274 3.0382 25 6 2.6797 3.2725 -1.1952 26 7 2.2453 2.0240 -1.1523 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.8588 3.7581 2.1431 33 1 3.0961 5.8813 -0.6883 34 1 3.9272 7.8845 -0.9579 35 1 6.5122 10.8086 1.8570 36 1 6.8480 9.6065 3.1260 37 1 9.7402 11.8820 3.2672 38 1 7.1720 6.4091 2.7870 39 1 6.4474 7.6814 3.7993 40 1 5.5204 6.2098 3.4202 41 1 2.8471 3.7623 -2.1430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826715781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:19 Heat of formation + Delta-G solvation = 74.154850 kcal Electronic energy + Delta-G solvation = -24857.519221 eV Core-core repulsion = 21159.878982 eV Total energy + Delta-G solvation = -3697.640238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51928 -40.88394 -39.15498 -35.60406 -34.06757 -33.83869 -33.63930 -32.20893 -31.38226 -29.77450 -27.47067 -26.79317 -25.07365 -24.83542 -23.53831 -22.57445 -21.79334 -20.23096 -19.41213 -18.11008 -17.37945 -16.97605 -16.86258 -16.72074 -15.51483 -15.03905 -14.96184 -14.58556 -14.37431 -14.33066 -14.19097 -13.84450 -13.64149 -13.38211 -12.78621 -12.66211 -12.52488 -12.22400 -12.10247 -11.91329 -11.60094 -11.41168 -11.34856 -11.21899 -11.01101 -10.94973 -10.93034 -10.45147 -10.35474 -10.04932 -9.75805 -9.32923 -8.77188 -8.74960 -8.59520 -8.09214 -6.40299 -4.48743 0.66777 0.93944 1.95004 2.60296 2.78914 3.15577 3.20070 3.21365 3.31248 3.49560 3.69220 3.80222 4.03509 4.18521 4.34936 4.68266 4.82820 4.92166 4.96330 4.99465 5.05196 5.09081 5.29300 5.38679 5.59019 5.60064 5.60627 5.72775 5.83024 5.85408 5.98153 6.02120 6.31208 6.38720 6.42763 6.64849 6.80488 6.85180 6.99795 7.25161 7.45857 7.64901 7.69076 7.95678 8.14597 8.24091 8.55834 9.18567 10.67868 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030351 B = 0.002403 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.323950 B =11648.591183 C =11761.041629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C 0.289 3.711 4 N -0.498 5.498 5 C 0.149 3.851 6 C 0.053 3.947 7 N -0.666 5.666 8 C 0.607 3.393 9 O -0.536 6.536 10 C -0.337 4.337 11 C 0.060 3.940 12 N -0.291 5.291 13 N -0.310 5.310 14 C 0.250 3.750 15 C -0.543 4.543 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.888 5.888 19 Si 0.909 3.091 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.174 3.826 24 C -0.095 4.095 25 C 0.121 3.879 26 N -0.499 5.499 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.184 0.816 33 H 0.413 0.587 34 H 0.178 0.822 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.271 0.729 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.352 -15.311 -5.288 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C 0.021 3.979 4 N -0.211 5.211 5 C -0.020 4.020 6 C -0.047 4.047 7 N -0.312 5.312 8 C 0.400 3.600 9 O -0.413 6.413 10 C -0.353 4.353 11 C -0.127 4.127 12 N -0.110 5.110 13 N -0.087 5.087 14 C 0.133 3.867 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.198 1.198 23 C 0.036 3.964 24 C -0.153 4.153 25 C -0.048 4.048 26 N -0.212 5.212 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.200 0.800 33 H 0.250 0.750 34 H 0.195 0.805 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.917 -15.187 -4.789 21.149 hybrid contribution 1.075 0.665 -0.654 1.423 sum -12.842 -14.522 -5.443 20.135 Atomic orbital electron populations 1.21690 0.93765 1.02321 1.02359 1.20284 0.96593 0.88168 1.04050 1.23137 0.93570 0.97597 0.83570 1.68302 1.12877 1.09808 1.30157 1.23634 0.89925 0.89708 0.98705 1.19584 1.00593 0.87873 0.96630 1.43189 1.46553 1.09254 1.32176 1.17485 0.76256 0.85989 0.80271 1.90706 1.61067 1.55745 1.33812 1.19426 1.15335 0.96662 1.03839 1.23754 0.99304 0.91014 0.98654 1.77179 1.10399 1.23241 1.00212 1.49442 1.31787 1.10824 1.16622 1.19907 0.86996 0.87395 0.92364 1.21182 0.91332 1.21339 1.24265 0.91699 1.24923 0.99753 0.94348 0.94577 1.69898 1.33915 1.21052 1.27681 0.86367 0.82519 0.78287 0.79288 1.19870 1.20815 1.19827 1.21507 0.92935 0.86099 0.95867 1.20612 1.02109 1.00405 0.92210 1.23096 0.94722 0.89779 0.97248 1.68170 1.13368 1.09208 1.30498 0.91588 0.92320 0.92413 0.89397 0.89298 0.79963 0.74973 0.80546 0.92362 0.92411 0.91968 0.89593 0.90589 0.88748 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.90 37.16 0.37 -0.68 16 2 C -0.05 -0.45 6.37 -27.89 -0.18 -0.63 16 3 C 0.29 3.42 6.89 -157.19 -1.08 2.34 16 4 N -0.50 -6.56 10.32 -10.58 -0.11 -6.66 16 5 C 0.15 1.96 9.98 -16.99 -0.17 1.79 16 6 C 0.05 0.62 6.35 -83.41 -0.53 0.09 16 7 N -0.67 -7.29 5.35 -10.65 -0.06 -7.34 16 8 C 0.61 8.91 7.68 -12.53 -0.10 8.81 16 9 O -0.54 -9.01 12.33 5.27 0.06 -8.95 16 10 C -0.34 -5.53 6.13 -105.07 -0.64 -6.17 16 11 C 0.06 0.94 11.51 -16.97 -0.20 0.74 16 12 N -0.29 -5.83 12.50 30.86 0.39 -5.44 16 13 N -0.31 -6.60 3.56 -57.77 -0.21 -6.81 16 14 C 0.25 5.97 5.97 -5.19 -0.03 5.94 16 15 C -0.54 -14.16 9.39 -34.44 -0.32 -14.49 16 16 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -23.98 13.29 55.43 0.74 -23.24 16 19 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C 0.17 3.28 7.01 -81.59 -0.57 2.70 16 24 C -0.10 -1.60 9.57 36.01 0.34 -1.25 16 25 C 0.12 1.25 11.26 -16.99 -0.19 1.05 16 26 N -0.50 -5.83 10.32 -10.58 -0.11 -5.94 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.18 2.50 6.32 -52.48 -0.33 2.17 16 33 H 0.41 3.19 7.79 -40.82 -0.32 2.87 16 34 H 0.18 1.81 7.51 -52.49 -0.39 1.42 16 35 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.06 1.36 7.02 -51.93 -0.36 1.00 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.08 1.25 7.05 -51.93 -0.37 0.88 16 40 H 0.09 1.48 6.50 -51.93 -0.34 1.14 16 41 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -30.79 355.34 -7.40 -38.18 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.04 Total: 3.55 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -3.40 Total: 1.95 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.64 Total: -55.44 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.06 Total: -8.95 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.79 -7.40 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.338 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds