Wall clock time and date at job start Tue Mar 31 2020 10:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47673 * 2 1 4 4 N 1.31796 * 119.03807 * 89.99559 * 3 2 1 5 5 C 1.32256 * 120.89635 * 180.02562 * 4 3 2 6 6 C 1.39249 * 119.01444 * 0.02562 * 5 4 3 7 7 N 1.39925 * 120.86965 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00544 * 34.94677 * 7 6 5 9 9 O 1.21614 * 119.99684 * 355.03309 * 8 7 6 10 10 C 1.47401 * 120.00400 * 175.31351 * 8 7 6 11 11 C 1.41302 * 126.41271 * 359.41139 * 10 8 7 12 12 N 1.30452 * 108.01926 * 179.88321 * 11 10 8 13 13 N 1.39926 * 108.90430 * 0.37944 * 12 11 10 14 14 C 1.46499 * 125.75562 * 179.75412 * 13 12 11 15 15 C 1.50701 * 109.47097 * 269.99865 * 14 13 12 16 16 H 1.07996 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99940 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99774 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99766 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47147 * 60.00258 * 19 17 15 21 21 H 1.48504 * 109.46737 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47082 * 299.99827 * 19 17 15 23 23 C 1.34268 * 108.49451 * 359.75559 * 13 12 11 24 24 C 1.50700 * 126.29748 * 179.97438 * 23 13 12 25 25 C 1.39245 * 118.25634 * 0.24536 * 6 5 4 26 26 N 1.31796 * 119.03653 * 270.02511 * 3 2 1 27 27 H 1.08996 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46896 * 300.00095 * 1 2 3 29 29 H 1.09005 * 109.46868 * 59.99521 * 1 2 3 30 30 H 1.09004 * 109.47161 * 239.99883 * 2 1 3 31 31 H 1.09005 * 109.46868 * 120.00479 * 2 1 3 32 32 H 1.08004 * 120.49306 * 180.02562 * 5 4 3 33 33 H 0.96999 * 119.99505 * 214.94647 * 7 6 5 34 34 H 1.07997 * 125.98910 * 0.03453 * 11 10 8 35 35 H 1.08993 * 109.47198 * 30.00447 * 14 13 12 36 36 H 1.09005 * 109.47134 * 150.00401 * 14 13 12 37 37 H 0.96999 * 119.99462 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.46841 * 269.97507 * 24 23 13 39 39 H 1.08998 * 109.46748 * 29.97464 * 24 23 13 40 40 H 1.09001 * 109.47240 * 149.97857 * 24 23 13 41 41 H 1.07993 * 120.49203 * 179.72475 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2457 2.0239 1.1523 5 6 2.6859 3.2703 1.1952 6 6 2.9232 3.9442 0.0000 7 7 3.3887 5.2638 0.0001 8 6 4.2437 5.6768 0.9565 9 8 4.5403 4.9310 1.8702 10 6 4.8146 7.0345 0.8985 11 6 4.5698 8.0055 -0.0984 12 7 5.2534 9.0748 0.2032 13 7 5.9647 8.8398 1.3850 14 6 6.8554 9.7927 2.0520 15 6 8.2566 9.6254 1.5230 16 1 8.4629 8.8839 0.7655 17 6 9.2750 10.4200 2.0054 18 7 9.0237 11.3234 2.9276 19 14 11.0117 10.2131 1.3492 20 1 11.0214 10.4665 -0.1139 21 1 11.9146 11.1790 2.0254 22 1 11.4797 8.8292 1.6151 23 6 5.6933 7.5936 1.8048 24 6 6.2465 6.9274 3.0382 25 6 2.6797 3.2725 -1.1952 26 7 2.2453 2.0240 -1.1523 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.8588 3.7581 2.1431 33 1 3.0961 5.8813 -0.6883 34 1 3.9272 7.8845 -0.9579 35 1 6.5122 10.8086 1.8570 36 1 6.8480 9.6065 3.1260 37 1 9.7402 11.8820 3.2672 38 1 7.1720 6.4091 2.7870 39 1 6.4474 7.6814 3.7993 40 1 5.5204 6.2098 3.4202 41 1 2.8471 3.7623 -2.1430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826715781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:18 Heat of formation + Delta-G solvation = 54.137071 kcal Electronic energy + Delta-G solvation = -24858.387257 eV Core-core repulsion = 21159.878982 eV Total energy + Delta-G solvation = -3698.508274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.58375 -42.12587 -40.29993 -36.61212 -35.83033 -34.75012 -34.52159 -33.80821 -32.82861 -30.79789 -29.06615 -28.20754 -26.03725 -25.77109 -25.20171 -23.67985 -22.73028 -21.46616 -20.78980 -19.24356 -18.86470 -18.35688 -17.99438 -17.69625 -16.90234 -16.53554 -16.11730 -15.98405 -15.65952 -15.45460 -15.01253 -14.84509 -14.71821 -14.47737 -14.28756 -14.10175 -13.71442 -13.60201 -13.38563 -13.12016 -13.00003 -12.82921 -12.70186 -12.31841 -12.19310 -11.99874 -11.98514 -11.89440 -11.84179 -11.74908 -10.99195 -10.76748 -10.30812 -10.25981 -9.71759 -9.33841 -8.38956 -6.55118 -0.24996 0.03990 0.62152 1.27292 1.38021 1.38367 1.46364 1.55769 2.00772 2.31467 2.35592 2.73084 2.93605 3.01467 3.18792 3.45940 3.66541 3.69445 3.89718 4.01456 4.13779 4.20202 4.33243 4.42267 4.48058 4.60344 4.66372 4.76060 4.79437 4.88445 4.99879 5.04845 5.10790 5.14456 5.16136 5.33867 5.47674 5.50726 5.63085 5.73539 5.94509 5.99799 6.31257 6.53255 6.80521 7.04817 7.09768 7.15980 8.68651 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030351 B = 0.002403 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.323950 B =11648.591183 C =11761.041629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C 0.282 3.718 4 N -0.519 5.519 5 C 0.133 3.867 6 C 0.045 3.955 7 N -0.643 5.643 8 C 0.611 3.389 9 O -0.559 6.559 10 C -0.330 4.330 11 C 0.085 3.915 12 N -0.335 5.335 13 N -0.337 5.337 14 C 0.266 3.734 15 C -0.556 4.556 16 H 0.053 0.947 17 C 0.024 3.976 18 N -0.916 5.916 19 Si 0.970 3.030 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.267 1.267 23 C 0.153 3.847 24 C -0.089 4.089 25 C 0.135 3.865 26 N -0.509 5.509 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.432 0.568 34 H 0.234 0.766 35 H 0.033 0.967 36 H 0.052 0.948 37 H 0.274 0.726 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.086 -16.913 -7.414 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.092 4.092 3 C 0.015 3.985 4 N -0.233 5.233 5 C -0.035 4.035 6 C -0.055 4.055 7 N -0.290 5.290 8 C 0.403 3.597 9 O -0.439 6.439 10 C -0.346 4.346 11 C -0.103 4.103 12 N -0.154 5.154 13 N -0.113 5.113 14 C 0.148 3.852 15 C -0.594 4.594 16 H 0.071 0.929 17 C -0.178 4.178 18 N -0.553 5.553 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.199 1.199 22 H -0.192 1.192 23 C 0.017 3.983 24 C -0.147 4.147 25 C -0.034 4.034 26 N -0.222 5.222 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.187 0.813 33 H 0.272 0.728 34 H 0.250 0.750 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.689 -16.803 -6.934 23.370 hybrid contribution 1.161 1.035 -0.048 1.556 sum -13.528 -15.768 -6.982 21.917 Atomic orbital electron populations 1.21651 0.92686 1.03550 1.01615 1.20435 0.97418 0.86564 1.04809 1.23743 0.92775 0.98681 0.83322 1.68310 1.13825 1.10050 1.31091 1.23554 0.90702 0.90184 0.99080 1.19557 1.01327 0.87926 0.96671 1.42826 1.45209 1.09468 1.31533 1.17229 0.76673 0.85064 0.80708 1.90710 1.62049 1.56098 1.35001 1.19630 1.14236 0.97507 1.03193 1.24617 0.97642 0.88923 0.99073 1.77136 1.12135 1.25643 1.00466 1.49126 1.33056 1.11296 1.17814 1.19385 0.86716 0.86924 0.92197 1.21355 0.92775 1.21159 1.24092 0.92912 1.25716 1.03403 0.93948 0.94700 1.69983 1.35120 1.21677 1.28568 0.85426 0.78130 0.78537 0.78568 1.19779 1.19898 1.19228 1.21971 0.93750 0.85670 0.96952 1.20592 1.02182 1.00275 0.91680 1.23690 0.92432 0.89196 0.98094 1.68295 1.13861 1.09819 1.30237 0.89406 0.93389 0.92744 0.88183 0.88956 0.81291 0.72773 0.75032 0.94924 0.93064 0.91665 0.89871 0.90986 0.87716 0.77519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.90 71.98 0.71 -1.03 16 2 C -0.05 -0.83 6.37 29.85 0.19 -0.64 16 3 C 0.28 6.24 6.89 138.75 0.96 7.19 16 4 N -0.52 -13.29 10.32 -187.38 -1.93 -15.22 16 5 C 0.13 3.39 9.98 84.87 0.85 4.24 16 6 C 0.05 0.94 6.35 38.33 0.24 1.18 16 7 N -0.64 -12.17 5.35 -305.87 -1.64 -13.80 16 8 C 0.61 16.84 7.68 86.66 0.67 17.50 16 9 O -0.56 -18.41 12.33 -4.07 -0.05 -18.46 16 10 C -0.33 -10.34 6.13 -20.15 -0.12 -10.47 16 11 C 0.08 2.43 11.51 85.65 0.99 3.41 16 12 N -0.33 -13.26 12.50 -56.27 -0.70 -13.96 16 13 N -0.34 -14.60 3.56 -336.68 -1.20 -15.80 16 14 C 0.27 13.24 5.97 85.63 0.51 13.75 16 15 C -0.56 -29.72 9.39 25.60 0.24 -29.48 16 16 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 17 C 0.02 1.27 5.46 84.66 0.46 1.73 16 18 N -0.92 -50.29 13.29 21.45 0.28 -50.01 16 19 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 C 0.15 5.79 7.01 42.14 0.30 6.09 16 24 C -0.09 -3.05 9.57 71.24 0.68 -2.37 16 25 C 0.14 2.34 11.26 84.87 0.96 3.30 16 26 N -0.51 -10.59 10.32 -187.39 -1.93 -12.52 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.17 4.69 6.32 -2.91 -0.02 4.68 16 33 H 0.43 4.79 7.79 -92.71 -0.72 4.06 16 34 H 0.23 3.63 7.51 -2.91 -0.02 3.61 16 35 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 2.55 7.02 -2.38 -0.02 2.54 16 37 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 38 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.07 2.47 7.05 -2.39 -0.02 2.45 16 40 H 0.10 3.31 6.50 -2.39 -0.02 3.30 16 41 H 0.21 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -68.44 355.34 2.83 -65.61 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.36 Total: 15.93 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 7.62 Total: 14.40 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -7.12 Total: -121.32 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.05 Total: -18.46 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -68.44 2.83 -65.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.749 kcal (2) G-P(sol) polarization free energy of solvation -68.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds