Wall clock time and date at job start Tue Mar 31 2020 10:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38044 * 126.28747 * 2 1 4 4 C 1.47425 * 126.42101 * 0.02562 * 3 2 1 5 5 O 1.21606 * 120.00293 * 322.61587 * 4 3 2 6 6 N 1.34780 * 120.00314 * 142.60869 * 4 3 2 7 7 C 1.46936 * 120.66296 * 174.53761 * 6 4 3 8 8 C 1.53383 * 109.43289 * 113.95109 * 7 6 4 9 9 C 1.50844 * 108.65469 * 45.85971 * 8 7 6 10 10 C 1.34667 * 128.08691 * 162.34294 * 9 8 7 11 11 N 1.35183 * 107.66800 * 180.11817 * 10 9 8 12 12 H 0.96998 * 126.00937 * 179.71485 * 11 10 9 13 13 N 1.40327 * 107.98933 * 359.56948 * 11 10 9 14 14 C 1.30019 * 108.07844 * 0.48163 * 13 11 10 15 15 C 1.47424 * 120.65531 * 354.51359 * 6 4 3 16 16 C 1.41297 * 107.16876 * 179.76212 * 3 2 1 17 17 N 1.30450 * 108.02065 * 0.24011 * 16 3 2 18 18 N 1.34257 * 126.29370 * 180.18376 * 2 1 3 19 19 C 1.46496 * 125.74995 * 0.02562 * 18 2 1 20 20 C 1.50703 * 109.47359 * 270.27377 * 19 18 2 21 21 H 1.08002 * 119.99654 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00157 * 180.02562 * 20 19 18 23 23 N 1.31521 * 120.00162 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00066 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47361 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47162 * 119.99957 * 24 22 20 27 27 H 1.48496 * 109.47176 * 239.99789 * 24 22 20 28 28 H 1.08995 * 109.47125 * 89.99641 * 1 2 3 29 29 H 1.08997 * 109.47103 * 209.99786 * 1 2 3 30 30 H 1.09000 * 109.47203 * 329.99873 * 1 2 3 31 31 H 1.09003 * 109.47852 * 353.95964 * 7 6 4 32 32 H 1.09000 * 109.47819 * 233.93670 * 7 6 4 33 33 H 1.08999 * 109.60666 * 286.11493 * 8 7 6 34 34 H 1.09004 * 109.74765 * 165.69217 * 8 7 6 35 35 H 1.08003 * 126.16976 * 359.85958 * 10 9 8 36 36 H 1.08990 * 109.93877 * 344.60751 * 15 6 4 37 37 H 1.08998 * 109.93433 * 105.75370 * 15 6 4 38 38 H 1.08000 * 125.98856 * 180.24375 * 16 3 2 39 39 H 1.08992 * 109.47744 * 30.27678 * 19 18 2 40 40 H 1.09000 * 109.46982 * 150.28056 * 19 18 2 41 41 H 0.97000 * 119.99857 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.9059 2.8524 -0.6384 6 7 2.5712 3.4393 0.7093 7 6 2.2207 4.8638 0.6262 8 6 1.6864 5.3379 1.9836 9 6 2.5999 4.8233 3.0681 10 6 2.7030 5.2525 4.3404 11 7 3.6500 4.5050 4.9501 12 1 3.9402 4.5929 5.8715 13 7 4.1372 3.5772 4.0168 14 6 3.5135 3.7705 2.8925 15 6 3.6871 3.0350 1.5838 16 6 3.6591 0.6499 0.0056 17 7 3.6341 -0.6543 0.0035 18 7 2.3017 -1.0821 -0.0035 19 6 1.8501 -2.4757 -0.0085 20 6 1.6882 -2.9565 1.4106 21 1 1.9002 -2.2903 2.2339 22 6 1.2696 -4.2466 1.6579 23 7 1.0120 -5.0580 0.6553 24 14 1.0683 -4.8423 3.4169 25 1 1.4181 -3.7449 4.3543 26 1 -0.3406 -5.2544 3.6418 27 1 1.9666 -6.0009 3.6530 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.4543 5.0057 -0.1358 32 1 3.1067 5.4413 0.3627 33 1 0.6803 4.9476 2.1372 34 1 1.6642 6.4274 2.0105 35 1 2.1347 6.0528 4.7911 36 1 3.6543 1.9591 1.7549 37 1 4.6370 3.3094 1.1250 38 1 4.5449 1.2677 0.0108 39 1 0.8941 -2.5460 -0.5271 40 1 2.5873 -3.0947 -0.5198 41 1 0.7178 -5.9657 0.8294 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826719207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:20 Heat of formation + Delta-G solvation = 116.120266 kcal Electronic energy + Delta-G solvation = -26061.019183 eV Core-core repulsion = 22365.198702 eV Total energy + Delta-G solvation = -3695.820481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62775 -40.77173 -38.97895 -36.12288 -33.93036 -32.84222 -32.06291 -31.71994 -31.06312 -29.07430 -27.38322 -26.82829 -26.25149 -23.87865 -23.10987 -21.49423 -21.30848 -19.93997 -19.34426 -18.11897 -17.80430 -16.92059 -16.59141 -15.85641 -15.75439 -15.21855 -14.85705 -14.61804 -14.25720 -13.98245 -13.81230 -13.56953 -13.46255 -13.04088 -12.83646 -12.53231 -12.38439 -12.25508 -12.12986 -11.92015 -11.72680 -11.48282 -11.29256 -11.08629 -10.92041 -10.64491 -10.37045 -10.23233 -9.89035 -9.63584 -9.40496 -8.70581 -8.68802 -8.57268 -8.52211 -7.85813 -6.32543 -4.40320 1.72913 2.27083 2.54865 2.60606 2.83399 3.06571 3.17287 3.25448 3.30012 3.44659 3.71257 4.25209 4.34875 4.54620 4.79037 4.99772 5.02987 5.15553 5.21652 5.24927 5.34747 5.36698 5.49735 5.60530 5.65643 5.70976 5.86463 5.89183 5.92232 6.00557 6.09310 6.40712 6.42629 6.48317 6.64159 6.81511 6.93130 7.10700 7.19422 7.46123 7.58052 7.59937 7.78890 7.81540 8.40626 8.53075 8.66126 9.26752 10.75592 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.003862 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.231478 B = 7249.301749 C = 8286.594597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.158 3.842 3 C -0.330 4.330 4 C 0.613 3.387 5 O -0.547 6.547 6 N -0.612 5.612 7 C 0.116 3.884 8 C -0.056 4.056 9 C -0.230 4.230 10 C 0.059 3.941 11 N -0.484 5.484 12 H 0.439 0.561 13 N -0.276 5.276 14 C 0.069 3.931 15 C 0.189 3.811 16 C 0.054 3.946 17 N -0.293 5.293 18 N -0.313 5.313 19 C 0.251 3.749 20 C -0.539 4.539 21 H 0.066 0.934 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.176 0.824 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.178 0.822 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 21.303 4.452 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.022 3.978 3 C -0.346 4.346 4 C 0.404 3.596 5 O -0.425 6.425 6 N -0.346 5.346 7 C -0.006 4.006 8 C -0.095 4.095 9 C -0.241 4.241 10 C -0.087 4.087 11 N -0.193 5.193 12 H 0.283 0.717 13 N -0.099 5.099 14 C -0.101 4.101 15 C 0.064 3.936 16 C -0.132 4.132 17 N -0.113 5.113 18 N -0.090 5.090 19 C 0.134 3.866 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.193 0.807 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.195 0.805 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.340 19.336 4.634 20.162 hybrid contribution -0.874 0.860 1.339 1.816 sum 2.466 20.196 5.973 21.204 Atomic orbital electron populations 1.20478 0.87097 1.03994 1.03422 1.21350 0.94750 0.86504 0.95238 1.19624 0.93431 0.92343 1.29203 1.17355 0.81128 0.83884 0.77241 1.90707 1.26539 1.81057 1.44163 1.47844 1.34513 1.07047 1.45214 1.21483 1.01149 0.80606 0.97406 1.20340 0.97495 0.99936 0.91764 1.20001 1.05597 1.02750 0.95798 1.22069 0.94505 0.98344 0.93749 1.46338 1.31992 1.27871 1.13102 0.71704 1.77033 1.22499 1.11789 0.98582 1.22588 0.95786 0.96678 0.95013 1.20225 0.89833 1.00105 0.83419 1.23800 0.96222 0.92504 1.00717 1.77147 0.98570 1.12154 1.23443 1.49323 1.02431 1.08197 1.49031 1.19847 0.96435 0.70980 0.99376 1.21301 1.47265 0.98122 0.91083 0.91608 1.24916 0.94501 0.96019 0.98188 1.69927 1.44640 1.07157 1.30931 0.86293 0.77941 0.78878 0.83557 1.19562 1.20580 1.20546 0.90085 0.89713 0.90212 0.88412 0.91259 0.90795 0.90301 0.80710 0.86607 0.89272 0.80548 0.92578 0.92457 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.31 36.01 0.34 -1.31 16 2 C 0.16 3.23 7.00 -81.60 -0.57 2.66 16 3 C -0.33 -6.12 5.25 -105.07 -0.55 -6.67 16 4 C 0.61 10.38 7.36 -12.52 -0.09 10.29 16 5 O -0.55 -10.40 15.69 5.27 0.08 -10.32 16 6 N -0.61 -8.28 2.92 -174.74 -0.51 -8.79 16 7 C 0.12 1.25 6.30 -3.61 -0.02 1.23 16 8 C -0.06 -0.53 6.44 -27.61 -0.18 -0.71 16 9 C -0.23 -2.54 5.93 -104.97 -0.62 -3.16 16 10 C 0.06 0.52 11.94 -17.34 -0.21 0.31 16 11 N -0.48 -4.69 7.37 30.37 0.22 -4.46 16 12 H 0.44 2.74 8.96 -182.43 -1.64 1.11 16 13 N -0.28 -3.72 12.68 33.78 0.43 -3.29 16 14 C 0.07 0.90 7.21 -82.30 -0.59 0.31 16 15 C 0.19 2.39 5.43 -4.48 -0.02 2.37 16 16 C 0.05 0.96 9.67 -16.98 -0.16 0.79 16 17 N -0.29 -6.34 12.50 30.86 0.39 -5.95 16 18 N -0.31 -7.09 3.56 -57.78 -0.21 -7.29 16 19 C 0.25 6.25 5.78 -5.19 -0.03 6.22 16 20 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 21 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 24 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.57 7.71 -51.93 -0.40 1.17 16 30 H 0.08 1.35 7.64 -51.93 -0.40 0.95 16 31 H 0.10 1.11 7.03 -51.93 -0.36 0.75 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.18 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.12 1.68 5.27 -51.93 -0.27 1.41 16 37 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 38 H 0.18 2.39 7.13 -52.49 -0.37 2.01 16 39 H 0.06 1.39 7.64 -51.93 -0.40 0.99 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -33.27 345.70 -8.16 -41.43 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.34 Total: 2.27 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -3.14 Total: -0.78 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 1.06 Total: -53.64 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.27 -8.16 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826719207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.546 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds