Wall clock time and date at job start Tue Mar 31 2020 10:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38044 * 126.28747 * 2 1 4 4 C 1.47425 * 126.42101 * 0.02562 * 3 2 1 5 5 O 1.21606 * 120.00293 * 322.61587 * 4 3 2 6 6 N 1.34780 * 120.00314 * 142.60869 * 4 3 2 7 7 C 1.46936 * 120.66296 * 174.53761 * 6 4 3 8 8 C 1.53383 * 109.43289 * 113.95109 * 7 6 4 9 9 C 1.50844 * 108.65469 * 45.85971 * 8 7 6 10 10 C 1.34667 * 128.08691 * 162.34294 * 9 8 7 11 11 N 1.35183 * 107.66800 * 180.11817 * 10 9 8 12 12 H 0.96998 * 126.00937 * 179.71485 * 11 10 9 13 13 N 1.40327 * 107.98933 * 359.56948 * 11 10 9 14 14 C 1.30019 * 108.07844 * 0.48163 * 13 11 10 15 15 C 1.47424 * 120.65531 * 354.51359 * 6 4 3 16 16 C 1.41297 * 107.16876 * 179.76212 * 3 2 1 17 17 N 1.30450 * 108.02065 * 0.24011 * 16 3 2 18 18 N 1.34257 * 126.29370 * 180.18376 * 2 1 3 19 19 C 1.46496 * 125.74995 * 0.02562 * 18 2 1 20 20 C 1.50703 * 109.47359 * 270.27377 * 19 18 2 21 21 H 1.08002 * 119.99654 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00157 * 180.02562 * 20 19 18 23 23 N 1.31521 * 120.00162 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00066 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47361 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47162 * 119.99957 * 24 22 20 27 27 H 1.48496 * 109.47176 * 239.99789 * 24 22 20 28 28 H 1.08995 * 109.47125 * 89.99641 * 1 2 3 29 29 H 1.08997 * 109.47103 * 209.99786 * 1 2 3 30 30 H 1.09000 * 109.47203 * 329.99873 * 1 2 3 31 31 H 1.09003 * 109.47852 * 353.95964 * 7 6 4 32 32 H 1.09000 * 109.47819 * 233.93670 * 7 6 4 33 33 H 1.08999 * 109.60666 * 286.11493 * 8 7 6 34 34 H 1.09004 * 109.74765 * 165.69217 * 8 7 6 35 35 H 1.08003 * 126.16976 * 359.85958 * 10 9 8 36 36 H 1.08990 * 109.93877 * 344.60751 * 15 6 4 37 37 H 1.08998 * 109.93433 * 105.75370 * 15 6 4 38 38 H 1.08000 * 125.98856 * 180.24375 * 16 3 2 39 39 H 1.08992 * 109.47744 * 30.27678 * 19 18 2 40 40 H 1.09000 * 109.46982 * 150.28056 * 19 18 2 41 41 H 0.97000 * 119.99857 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.9059 2.8524 -0.6384 6 7 2.5712 3.4393 0.7093 7 6 2.2207 4.8638 0.6262 8 6 1.6864 5.3379 1.9836 9 6 2.5999 4.8233 3.0681 10 6 2.7030 5.2525 4.3404 11 7 3.6500 4.5050 4.9501 12 1 3.9402 4.5929 5.8715 13 7 4.1372 3.5772 4.0168 14 6 3.5135 3.7705 2.8925 15 6 3.6871 3.0350 1.5838 16 6 3.6591 0.6499 0.0056 17 7 3.6341 -0.6543 0.0035 18 7 2.3017 -1.0821 -0.0035 19 6 1.8501 -2.4757 -0.0085 20 6 1.6882 -2.9565 1.4106 21 1 1.9002 -2.2903 2.2339 22 6 1.2696 -4.2466 1.6579 23 7 1.0120 -5.0580 0.6553 24 14 1.0683 -4.8423 3.4169 25 1 1.4181 -3.7449 4.3543 26 1 -0.3406 -5.2544 3.6418 27 1 1.9666 -6.0009 3.6530 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.4543 5.0057 -0.1358 32 1 3.1067 5.4413 0.3627 33 1 0.6803 4.9476 2.1372 34 1 1.6642 6.4274 2.0105 35 1 2.1347 6.0528 4.7911 36 1 3.6543 1.9591 1.7549 37 1 4.6370 3.3094 1.1250 38 1 4.5449 1.2677 0.0108 39 1 0.8941 -2.5460 -0.5271 40 1 2.5873 -3.0947 -0.5198 41 1 0.7178 -5.9657 0.8294 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826719207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:19 Heat of formation + Delta-G solvation = 93.516837 kcal Electronic energy + Delta-G solvation = -26061.999341 eV Core-core repulsion = 22365.198702 eV Total energy + Delta-G solvation = -3696.800640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.56845 -42.17737 -40.23571 -37.23888 -35.82194 -34.06661 -33.51833 -32.73499 -32.53954 -30.05022 -29.01738 -28.31352 -27.36107 -25.49987 -24.39477 -22.79755 -22.16013 -21.18311 -20.67019 -19.35630 -18.86564 -18.57671 -18.03977 -17.08543 -16.92941 -16.62643 -16.27770 -16.00636 -15.60640 -15.24410 -14.86390 -14.82240 -14.53963 -14.32062 -14.06855 -13.89979 -13.79897 -13.61381 -13.58408 -13.11230 -13.06716 -12.95916 -12.84547 -12.73579 -12.32664 -12.10302 -11.83622 -11.79867 -11.48955 -10.85515 -10.76463 -10.47810 -10.22274 -9.74730 -9.42957 -9.32697 -8.37840 -6.54110 0.74797 0.96914 1.33366 1.35154 1.38195 1.48664 1.63664 1.72813 1.83091 2.16431 2.31335 2.37235 2.94073 3.50936 3.59350 3.73911 3.88212 4.00424 4.15364 4.24872 4.30844 4.40913 4.49289 4.53074 4.56058 4.64899 4.77677 4.79669 4.82821 4.90449 4.97038 5.05376 5.10887 5.13892 5.20536 5.49429 5.55852 5.61679 5.70855 5.75255 6.06397 6.33574 6.50249 6.55550 6.70381 6.84227 7.17054 7.23750 8.70219 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.003862 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.231478 B = 7249.301749 C = 8286.594597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.140 3.860 3 C -0.328 4.328 4 C 0.613 3.387 5 O -0.572 6.572 6 N -0.602 5.602 7 C 0.111 3.889 8 C -0.047 4.047 9 C -0.256 4.256 10 C 0.080 3.920 11 N -0.477 5.477 12 H 0.452 0.548 13 N -0.319 5.319 14 C 0.050 3.950 15 C 0.189 3.811 16 C 0.075 3.925 17 N -0.333 5.333 18 N -0.337 5.337 19 C 0.268 3.732 20 C -0.554 4.554 21 H 0.050 0.950 22 C 0.025 3.975 23 N -0.916 5.916 24 Si 0.970 3.030 25 H -0.275 1.275 26 H -0.267 1.267 27 H -0.273 1.273 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.220 0.780 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.219 0.781 39 H 0.051 0.949 40 H 0.031 0.969 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 23.979 6.029 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.004 3.996 3 C -0.344 4.344 4 C 0.403 3.597 5 O -0.452 6.452 6 N -0.334 5.334 7 C -0.011 4.011 8 C -0.086 4.086 9 C -0.268 4.268 10 C -0.067 4.067 11 N -0.187 5.187 12 H 0.299 0.701 13 N -0.142 5.142 14 C -0.118 4.118 15 C 0.064 3.936 16 C -0.111 4.111 17 N -0.153 5.153 18 N -0.114 5.114 19 C 0.149 3.851 20 C -0.592 4.592 21 H 0.069 0.931 22 C -0.176 4.176 23 N -0.554 5.554 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.198 1.198 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.237 0.763 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.235 0.765 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.471 22.043 6.231 23.168 hybrid contribution -0.849 0.193 0.897 1.250 sum 2.622 22.236 7.128 23.497 Atomic orbital electron populations 1.20470 0.85887 1.03771 1.04142 1.21867 0.95846 0.86566 0.95286 1.19916 0.93462 0.93081 1.27902 1.17117 0.81211 0.83610 0.77727 1.90694 1.27587 1.81318 1.45602 1.47826 1.33894 1.07790 1.43908 1.21755 1.02178 0.78858 0.98273 1.20307 0.96173 1.01862 0.90295 1.20283 1.06137 1.03043 0.97301 1.22737 0.93117 0.97945 0.92877 1.46406 1.31782 1.27070 1.13439 0.70093 1.76946 1.24136 1.13696 0.99456 1.22648 0.96792 0.97539 0.94867 1.20250 0.90504 0.98870 0.83971 1.24440 0.97419 0.91520 0.97706 1.77093 0.98413 1.14154 1.25643 1.49059 1.03256 1.07696 1.51416 1.19362 0.95274 0.72351 0.98106 1.21412 1.47791 0.98447 0.91536 0.93128 1.25699 0.93874 0.95940 1.02099 1.70005 1.44954 1.07615 1.32830 0.85323 0.78495 0.78149 0.78609 1.19944 1.19237 1.19834 0.88880 0.90859 0.89275 0.89166 0.88739 0.92170 0.86892 0.76309 0.88917 0.86558 0.76462 0.93134 0.95066 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.10 9.31 71.24 0.66 -2.44 16 2 C 0.14 5.83 7.00 42.14 0.29 6.13 16 3 C -0.33 -12.14 5.25 -20.15 -0.11 -12.25 16 4 C 0.61 20.31 7.36 86.66 0.64 20.95 16 5 O -0.57 -21.43 15.69 -4.05 -0.06 -21.49 16 6 N -0.60 -15.30 2.92 -825.02 -2.41 -17.71 16 7 C 0.11 2.10 6.30 86.42 0.54 2.65 16 8 C -0.05 -0.76 6.44 30.02 0.19 -0.56 16 9 C -0.26 -4.92 5.93 -20.09 -0.12 -5.04 16 10 C 0.08 1.10 11.94 83.36 1.00 2.09 16 11 N -0.48 -8.00 7.37 -57.84 -0.43 -8.42 16 12 H 0.45 4.50 8.96 -213.18 -1.91 2.59 16 13 N -0.32 -8.12 12.68 -47.04 -0.60 -8.71 16 14 C 0.05 1.22 7.21 43.51 0.31 1.53 16 15 C 0.19 4.48 5.43 85.59 0.47 4.95 16 16 C 0.08 2.65 9.67 85.65 0.83 3.48 16 17 N -0.33 -14.75 12.50 -56.27 -0.70 -15.46 16 18 N -0.34 -15.86 3.56 -336.71 -1.20 -17.06 16 19 C 0.27 14.01 5.78 85.63 0.49 14.50 16 20 C -0.55 -30.78 9.39 25.60 0.24 -30.54 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 22 C 0.03 1.38 5.46 84.65 0.46 1.84 16 23 N -0.92 -51.52 13.29 21.45 0.28 -51.23 16 24 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 28 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.07 2.82 7.71 -2.39 -0.02 2.80 16 30 H 0.09 3.05 7.64 -2.39 -0.02 3.03 16 31 H 0.09 1.89 7.03 -2.39 -0.02 1.87 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.22 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.09 2.64 5.27 -2.39 -0.01 2.63 16 37 H 0.12 2.08 8.11 -2.39 -0.02 2.06 16 38 H 0.22 5.49 7.13 -2.91 -0.02 5.47 16 39 H 0.05 2.64 7.64 -2.39 -0.02 2.62 16 40 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -74.14 345.70 1.99 -72.15 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -0.83 Total: 15.56 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.91 Total: 7.29 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -5.05 Total: -118.59 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.06 Total: -21.49 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -74.14 1.99 -72.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826719207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.666 kcal (2) G-P(sol) polarization free energy of solvation -74.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds