Wall clock time and date at job start Tue Mar 31 2020 10:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47537 * 2 1 4 4 N 1.30842 * 125.82911 * 270.04620 * 3 2 1 5 5 N 1.40071 * 108.36123 * 179.97438 * 4 3 2 6 6 C 1.46506 * 126.05409 * 179.97438 * 5 4 3 7 7 C 1.35839 * 107.88725 * 0.02562 * 5 4 3 8 8 C 1.35728 * 107.56002 * 359.97438 * 7 5 4 9 9 N 1.40838 * 126.07450 * 180.26413 * 8 7 5 10 10 C 1.34772 * 119.99703 * 359.69611 * 9 8 7 11 11 O 1.21589 * 120.00434 * 359.97438 * 10 9 8 12 12 N 1.34789 * 119.99847 * 179.97438 * 10 9 8 13 13 C 1.39441 * 120.00083 * 175.45209 * 12 10 9 14 14 C 1.38644 * 119.65084 * 186.28551 * 13 12 10 15 15 C 1.40822 * 118.67753 * 179.97438 * 14 13 12 16 16 C 1.41542 * 120.99547 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99491 * 201.14217 * 16 15 14 18 18 C 1.40027 * 120.00403 * 21.14346 * 16 15 14 19 19 N 1.30744 * 119.99850 * 12.10717 * 18 16 15 20 20 Si 1.86803 * 119.99899 * 192.11383 * 18 16 15 21 21 H 1.48498 * 109.47305 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46891 * 119.99641 * 20 18 16 23 23 H 1.48499 * 109.47089 * 239.99548 * 20 18 16 24 24 C 1.41166 * 118.00093 * 359.97438 * 15 14 13 25 25 C 1.36584 * 119.13484 * 0.02562 * 24 15 14 26 26 N 1.32071 * 121.25438 * 359.74036 * 25 24 15 27 27 H 1.09007 * 109.46903 * 299.99835 * 1 2 3 28 28 H 1.09002 * 109.46987 * 59.99947 * 1 2 3 29 29 H 1.09000 * 109.47689 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47125 * 240.00173 * 2 1 3 31 31 H 1.09002 * 109.46987 * 120.00053 * 2 1 3 32 32 H 1.09003 * 109.47148 * 89.97371 * 6 5 4 33 33 H 1.08996 * 109.46979 * 209.97664 * 6 5 4 34 34 H 1.08996 * 109.47216 * 329.97451 * 6 5 4 35 35 H 1.07993 * 126.22133 * 180.02562 * 7 5 4 36 36 H 0.97001 * 120.00149 * 179.69008 * 9 8 7 37 37 H 0.96996 * 119.99247 * 355.45005 * 12 10 9 38 38 H 1.08002 * 120.66361 * 0.02562 * 14 13 12 39 39 H 0.97002 * 119.99526 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.43202 * 179.97438 * 24 15 14 41 41 H 1.07995 * 119.37519 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2869 2.1431 -1.0608 5 7 2.7321 3.4029 -0.6404 6 6 3.1245 4.5137 -1.5114 7 6 2.7367 3.4118 0.7180 8 6 2.3067 2.1945 1.1369 9 7 2.1571 1.7834 2.4757 10 6 2.4586 2.6316 3.4787 11 8 2.8601 3.7516 3.2279 12 7 2.3150 2.2384 4.7599 13 6 2.7159 3.0802 5.7967 14 6 2.6874 2.6197 7.1041 15 6 3.0971 3.4870 8.1352 16 6 3.0872 3.0680 9.4871 17 1 3.0664 3.8015 10.2796 18 6 3.1043 1.7026 9.7972 19 7 3.3666 0.8239 8.8652 20 14 2.7523 1.1366 11.5422 21 1 2.4875 2.3180 12.4019 22 1 1.5636 0.2465 11.5436 23 1 3.9265 0.3952 12.0685 24 6 3.5180 4.7867 7.7798 25 6 3.5118 5.1511 6.4635 26 7 3.1252 4.3100 5.5215 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 2.2528 5.1313 -1.7276 33 1 3.8824 5.1170 -1.0116 34 1 3.5304 4.1191 -2.4428 35 1 3.0285 4.2377 1.3497 36 1 1.8371 0.8899 2.6758 37 1 1.9328 1.3698 4.9606 38 1 2.3583 1.6156 7.3273 39 1 3.3781 -0.1220 9.0800 40 1 3.8400 5.4842 8.5390 41 1 3.8327 6.1446 6.1873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871727011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:59 Heat of formation + Delta-G solvation = 70.559282 kcal Electronic energy + Delta-G solvation = -25265.277538 eV Core-core repulsion = 21567.481385 eV Total energy + Delta-G solvation = -3697.796154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.46624 -41.22772 -39.74245 -36.38185 -36.02773 -35.53632 -34.89720 -32.48409 -32.35659 -30.84048 -29.65122 -27.91185 -27.31071 -24.49213 -23.94775 -23.74338 -22.50163 -21.37140 -20.93358 -19.51787 -19.05616 -18.47174 -17.37307 -17.02773 -16.78125 -16.33900 -16.11485 -15.98924 -15.86344 -15.43020 -15.08108 -14.95471 -14.67056 -14.42961 -14.28594 -14.08586 -13.82588 -13.47007 -13.14519 -12.93502 -12.83811 -12.67898 -12.36944 -12.12521 -12.01258 -11.86467 -11.82560 -11.60685 -11.46936 -11.19804 -11.17057 -10.18801 -9.90414 -9.61030 -8.96203 -8.62068 -8.50379 -6.55454 0.78684 0.88123 1.03419 1.28983 1.43624 1.53886 1.57960 1.64061 1.83547 2.21917 2.40379 2.86452 3.11571 3.55656 3.78238 3.81158 4.13086 4.22324 4.29424 4.42791 4.47936 4.61734 4.65409 4.66855 4.72690 4.77454 4.88907 4.96405 5.08546 5.13664 5.15590 5.22003 5.29897 5.40288 5.53360 5.66402 5.76541 5.84144 6.01837 6.10900 6.28226 6.59255 6.66120 6.82027 6.86239 6.95790 7.56133 7.90352 8.28503 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.002959 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.534269 B = 9461.954312 C =10660.465335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.064 3.936 4 N -0.303 5.303 5 N -0.381 5.381 6 C 0.100 3.900 7 C 0.025 3.975 8 C 0.003 3.997 9 N -0.640 5.640 10 C 0.690 3.310 11 O -0.561 6.561 12 N -0.654 5.654 13 C 0.351 3.649 14 C -0.265 4.265 15 C 0.110 3.890 16 C -0.477 4.477 17 H 0.082 0.918 18 C 0.037 3.963 19 N -0.810 5.810 20 Si 0.989 3.011 21 H -0.260 1.260 22 H -0.261 1.261 23 H -0.267 1.267 24 C -0.299 4.299 25 C 0.114 3.886 26 N -0.577 5.577 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.186 0.814 36 H 0.420 0.580 37 H 0.422 0.578 38 H 0.138 0.862 39 H 0.292 0.708 40 H 0.114 0.886 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -4.602 -13.704 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.105 4.105 4 N -0.127 5.127 5 N -0.166 5.166 6 C -0.040 4.040 7 C -0.122 4.122 8 C -0.102 4.102 9 N -0.291 5.291 10 C 0.390 3.610 11 O -0.435 6.435 12 N -0.303 5.303 13 C 0.124 3.876 14 C -0.291 4.291 15 C 0.102 3.898 16 C -0.507 4.507 17 H 0.101 0.899 18 C -0.180 4.180 19 N -0.436 5.436 20 Si 0.810 3.190 21 H -0.183 1.183 22 H -0.186 1.186 23 H -0.192 1.192 24 C -0.323 4.323 25 C -0.039 4.039 26 N -0.297 5.297 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.202 0.798 36 H 0.257 0.743 37 H 0.259 0.741 38 H 0.155 0.845 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.724 -3.403 -16.250 17.015 hybrid contribution -0.188 -0.958 2.711 2.881 sum -3.912 -4.361 -13.539 14.753 Atomic orbital electron populations 1.21695 0.93377 1.03172 1.01648 1.20106 0.96732 0.86594 1.04723 1.22514 1.01528 0.98583 0.87853 1.77090 1.21210 0.91574 1.22798 1.48603 1.52044 1.11449 1.04527 1.22132 1.02110 0.85218 0.94507 1.23023 1.04192 1.00178 0.84856 1.17517 1.13634 0.95228 0.83848 1.41698 1.69192 1.16936 1.01237 1.16061 0.79609 0.84534 0.80752 1.90829 1.50630 1.20042 1.81984 1.42266 1.64765 1.20560 1.02701 1.18145 0.94997 0.88746 0.85700 1.21764 1.13687 1.03691 0.89925 1.18018 0.86617 0.91051 0.94128 1.19924 1.45214 0.93235 0.92373 0.89939 1.26826 0.91050 0.96128 1.04000 1.69764 1.33213 1.04002 1.36618 0.85042 0.78942 0.78865 0.76182 1.18323 1.18574 1.19162 1.21830 1.13954 0.99432 0.97060 1.21882 0.95478 0.97756 0.88792 1.67298 1.22056 1.03267 1.37074 0.93145 0.93420 0.89561 0.89122 0.88561 0.89617 0.88109 0.88063 0.79779 0.74250 0.74071 0.84475 0.89696 0.86804 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 71.98 0.71 -1.44 16 2 C -0.04 -0.73 6.34 29.84 0.19 -0.54 16 3 C 0.06 1.64 6.48 43.19 0.28 1.92 16 4 N -0.30 -8.48 12.57 -47.16 -0.59 -9.07 16 5 N -0.38 -10.28 4.04 -368.47 -1.49 -11.77 16 6 C 0.10 1.70 11.48 127.77 1.47 3.16 16 7 C 0.02 0.79 10.38 83.49 0.87 1.66 16 8 C 0.00 0.08 6.90 37.60 0.26 0.34 16 9 N -0.64 -18.53 5.48 -317.72 -1.74 -20.28 16 10 C 0.69 26.47 8.50 179.05 1.52 27.99 16 11 O -0.56 -25.67 11.76 -4.00 -0.05 -25.72 16 12 N -0.65 -25.31 5.39 -322.35 -1.74 -27.05 16 13 C 0.35 17.01 7.42 132.77 0.98 18.00 16 14 C -0.26 -13.42 8.67 23.00 0.20 -13.22 16 15 C 0.11 5.82 5.65 -21.11 -0.12 5.70 16 16 C -0.48 -24.31 9.15 23.52 0.22 -24.09 16 17 H 0.08 4.04 7.88 -2.91 -0.02 4.02 16 18 C 0.04 1.71 5.31 85.29 0.45 2.16 16 19 N -0.81 -38.52 10.50 21.84 0.23 -38.29 16 20 Si 0.99 35.18 29.58 68.60 2.03 37.21 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 22 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 23 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 24 C -0.30 -14.71 9.85 22.60 0.22 -14.49 16 25 C 0.11 5.47 11.10 84.27 0.94 6.40 16 26 N -0.58 -29.43 7.86 -194.28 -1.53 -30.96 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.32 7.69 -2.39 -0.02 1.31 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.19 6.63 5.84 -2.91 -0.02 6.62 16 36 H 0.42 8.86 8.23 -92.71 -0.76 8.10 16 37 H 0.42 12.96 8.72 -92.71 -0.81 12.15 16 38 H 0.14 6.87 5.81 -2.91 -0.02 6.86 16 39 H 0.29 12.30 8.29 -92.71 -0.77 11.54 16 40 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 41 H 0.15 6.05 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -70.66 351.19 2.83 -67.83 By element: Atomic # 1 Polarization: 45.03 SS G_CDS: -0.48 Total: 44.55 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 8.19 Total: 13.55 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -6.86 Total: -137.42 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -70.66 2.83 -67.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.385 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds