Wall clock time and date at job start Tue Mar 31 2020 10:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39872 * 125.90011 * 2 1 4 4 C 1.35312 * 107.92066 * 180.14446 * 3 2 1 5 5 C 1.50706 * 126.12521 * 179.90128 * 4 3 2 6 6 N 1.46504 * 109.46701 * 94.68767 * 5 4 3 7 7 C 1.34779 * 119.99476 * 180.02562 * 6 5 4 8 8 O 1.21575 * 120.00548 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99775 * 180.02562 * 7 6 5 10 10 C 1.39458 * 119.99710 * 184.95637 * 9 7 6 11 11 C 1.38648 * 119.64396 * 174.33208 * 10 9 7 12 12 C 1.40821 * 118.67078 * 180.25111 * 11 10 9 13 13 C 1.41546 * 120.99319 * 179.72009 * 12 11 10 14 14 H 1.07999 * 120.00434 * 26.49063 * 13 12 11 15 15 C 1.40029 * 119.99797 * 206.48446 * 13 12 11 16 16 N 1.30743 * 120.00323 * 9.34687 * 15 13 12 17 17 Si 1.86804 * 119.99905 * 189.35091 * 15 13 12 18 18 H 1.48495 * 109.47221 * 84.99365 * 17 15 13 19 19 H 1.48505 * 109.46887 * 204.99686 * 17 15 13 20 20 H 1.48501 * 109.46961 * 324.99098 * 17 15 13 21 21 C 1.41164 * 118.00617 * 359.50813 * 12 11 10 22 22 C 1.36592 * 119.12406 * 0.46918 * 21 12 11 23 23 N 1.32067 * 121.26323 * 359.77120 * 22 21 12 24 24 N 1.34942 * 107.74601 * 359.63560 * 4 3 2 25 25 C 1.46506 * 126.03880 * 180.21018 * 24 4 3 26 26 N 1.30832 * 125.89852 * 179.73855 * 2 1 3 27 27 H 1.09003 * 109.46674 * 270.24096 * 1 2 3 28 28 H 1.08998 * 109.46659 * 30.23543 * 1 2 3 29 29 H 1.08997 * 109.46926 * 150.23637 * 1 2 3 30 30 H 1.08008 * 126.03670 * 0.02562 * 3 2 1 31 31 H 1.08996 * 109.47084 * 334.68983 * 5 4 3 32 32 H 1.08998 * 109.47062 * 214.68157 * 5 4 3 33 33 H 0.97000 * 120.00105 * 359.97438 * 6 5 4 34 34 H 0.97002 * 119.99675 * 4.95021 * 9 7 6 35 35 H 1.08001 * 120.66470 * 359.96986 * 11 10 9 36 36 H 0.96996 * 120.00055 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.43343 * 180.24607 * 21 12 11 38 38 H 1.08003 * 119.36744 * 179.78968 * 22 21 12 39 39 H 1.08994 * 109.47409 * 89.99849 * 25 24 4 40 40 H 1.08994 * 109.46839 * 210.00208 * 25 24 4 41 41 H 1.09009 * 109.46547 * 329.99938 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 -0.0032 5 6 4.8351 1.5990 -0.0065 6 7 5.3004 1.7940 1.3689 7 6 6.3859 2.5551 1.6115 8 8 6.9793 3.0793 0.6889 9 7 6.8143 2.7341 2.8768 10 6 7.8732 3.6032 3.1380 11 6 8.2314 3.8729 4.4500 12 6 9.3002 4.7577 4.6903 13 6 9.7033 5.0723 6.0102 14 1 9.5258 4.3698 6.8110 15 6 10.3324 6.2944 6.2776 16 7 10.3848 7.2186 5.3542 17 14 11.0971 6.6043 7.9535 18 1 12.4751 6.0518 7.9787 19 1 11.1448 8.0657 8.2132 20 1 10.2789 5.9420 9.0010 21 6 9.9605 5.3178 3.5754 22 6 9.5363 4.9919 2.3186 23 7 8.5265 4.1619 2.1299 24 7 3.6088 -0.6340 0.0029 25 6 4.7900 -1.5008 0.0065 26 7 2.2742 -1.0598 0.0048 27 1 -0.3633 0.0043 1.0277 28 1 -0.3632 0.8879 -0.5175 29 1 -0.3633 -0.8921 -0.5101 30 1 1.9923 2.1599 0.0004 31 1 4.5836 2.5645 -0.4454 32 1 5.6234 1.1273 -0.5932 33 1 4.8267 1.3760 2.1050 34 1 6.3860 2.2585 3.6057 35 1 7.6984 3.4171 5.2713 36 1 10.8208 8.0650 5.5393 37 1 10.7879 5.9980 3.7145 38 1 10.0365 5.4208 1.4629 39 1 5.0833 -1.7110 1.0350 40 1 4.5562 -2.4355 -0.5030 41 1 5.6092 -1.0004 -0.5100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871729793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:30 Heat of formation + Delta-G solvation = 90.209708 kcal Electronic energy + Delta-G solvation = -24611.590664 eV Core-core repulsion = 20914.646617 eV Total energy + Delta-G solvation = -3696.944047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58396 -39.84004 -38.07510 -35.21653 -34.39474 -33.90063 -33.56804 -31.00567 -30.65542 -29.72909 -28.51849 -26.26974 -25.94107 -25.54591 -22.06717 -21.71064 -20.71097 -20.22081 -19.71105 -18.09306 -17.91743 -16.77022 -16.18301 -15.77818 -15.31646 -15.27741 -14.63196 -14.48101 -14.30227 -14.13437 -13.82886 -13.79905 -13.46793 -13.24056 -13.05324 -13.00572 -12.59509 -12.41473 -12.37348 -12.25374 -12.00990 -11.43129 -11.26815 -10.98526 -10.80479 -10.38651 -10.07787 -9.79429 -9.68057 -9.42838 -9.36129 -9.00274 -8.77076 -8.01298 -7.73749 -7.04135 -6.76013 -4.63886 1.44872 2.21672 2.43979 2.70371 2.77374 3.01362 3.03700 3.07951 3.22618 3.77937 3.85095 4.19303 4.23375 4.47611 4.69893 4.74613 4.86721 4.92401 5.11129 5.16855 5.34571 5.41313 5.47887 5.57225 5.64499 5.69029 5.93150 5.96732 6.42331 6.44153 6.48028 6.58401 6.71022 6.76124 6.91465 7.11056 7.19096 7.42317 7.47151 7.53024 7.88851 8.05828 8.26952 8.47517 8.72699 8.74500 9.05066 9.71418 10.09844 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028770 B = 0.002234 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.012673 B =12529.679975 C =12830.854215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.068 3.932 3 C -0.248 4.248 4 C 0.069 3.931 5 C 0.208 3.792 6 N -0.752 5.752 7 C 0.693 3.307 8 O -0.528 6.528 9 N -0.668 5.668 10 C 0.365 3.635 11 C -0.305 4.305 12 C 0.146 3.854 13 C -0.455 4.455 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.791 5.791 17 Si 0.916 3.084 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.222 4.222 22 C 0.103 3.897 23 N -0.551 5.551 24 N -0.365 5.365 25 C 0.098 3.902 26 N -0.292 5.292 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.150 0.850 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.393 0.607 34 H 0.403 0.597 35 H 0.101 0.899 36 H 0.283 0.717 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.013 -11.861 -6.172 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C -0.278 4.278 4 C -0.059 4.059 5 C 0.082 3.918 6 N -0.412 5.412 7 C 0.393 3.607 8 O -0.398 6.398 9 N -0.316 5.316 10 C 0.136 3.864 11 C -0.331 4.331 12 C 0.137 3.863 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.417 5.417 17 Si 0.740 3.260 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.245 4.245 22 C -0.047 4.047 23 N -0.271 5.271 24 N -0.147 5.147 25 C -0.043 4.043 26 N -0.116 5.116 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.168 0.832 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.226 0.774 34 H 0.237 0.763 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.458 -12.674 -8.020 19.498 hybrid contribution 0.164 0.830 2.387 2.532 sum -12.294 -11.844 -5.634 17.977 Atomic orbital electron populations 1.20175 0.86555 1.03287 1.03006 1.22343 0.97024 0.90685 0.99733 1.21238 0.90736 1.00089 1.15786 1.21078 0.96913 0.84582 1.03306 1.19485 0.90525 0.97904 0.83918 1.45192 1.31620 1.56205 1.08148 1.16021 0.80558 0.80115 0.84042 1.91041 1.56428 1.50223 1.42098 1.42549 1.35231 1.46611 1.07247 1.17748 0.87892 0.90889 0.89898 1.21187 1.05406 1.13427 0.93075 1.17602 0.87433 0.87443 0.93774 1.19553 1.33365 1.01671 0.94032 0.90180 1.25966 0.93751 0.95472 0.99209 1.69747 1.32618 1.04933 1.34391 0.86196 0.80134 0.78084 0.81537 1.19131 1.20192 1.18630 1.22086 1.04009 1.06254 0.92143 1.21639 0.92928 0.94187 0.95948 1.67199 1.11734 1.15168 1.32970 1.48455 1.05563 1.04158 1.56540 1.21913 0.83817 0.94865 1.03720 1.77324 0.86245 1.22731 1.25273 0.90506 0.90329 0.91011 0.83212 0.88878 0.90517 0.77392 0.76337 0.88087 0.90635 0.85086 0.85991 0.90504 0.89215 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.01 0.38 -0.12 16 2 C 0.07 0.71 7.22 -82.40 -0.59 0.12 16 3 C -0.25 -2.59 10.65 -40.01 -0.43 -3.01 16 4 C 0.07 0.73 6.30 -82.26 -0.52 0.22 16 5 C 0.21 2.35 5.84 -5.19 -0.03 2.32 16 6 N -0.75 -9.47 5.55 -66.41 -0.37 -9.83 16 7 C 0.69 12.44 8.52 -86.91 -0.74 11.70 16 8 O -0.53 -11.90 14.60 5.30 0.08 -11.83 16 9 N -0.67 -12.17 5.40 -15.86 -0.09 -12.26 16 10 C 0.36 8.50 7.42 -154.68 -1.15 7.35 16 11 C -0.30 -7.25 9.74 -38.45 -0.37 -7.63 16 12 C 0.15 3.81 5.60 -106.55 -0.60 3.22 16 13 C -0.45 -11.60 9.13 -37.65 -0.34 -11.94 16 14 H 0.08 1.94 7.86 -52.49 -0.41 1.52 16 15 C 0.07 1.81 5.32 -17.34 -0.09 1.72 16 16 N -0.79 -19.82 10.70 55.55 0.59 -19.23 16 17 Si 0.92 17.97 29.57 -169.99 -5.03 12.94 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 C -0.22 -5.74 8.73 -39.07 -0.34 -6.09 16 22 C 0.10 2.58 11.10 -18.04 -0.20 2.38 16 23 N -0.55 -14.09 7.86 -12.76 -0.10 -14.19 16 24 N -0.36 -3.90 4.01 -63.88 -0.26 -4.15 16 25 C 0.10 0.75 11.27 59.85 0.67 1.42 16 26 N -0.29 -3.52 12.58 33.67 0.42 -3.09 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 0.87 7.24 -51.93 -0.38 0.49 16 33 H 0.39 4.06 8.48 -40.82 -0.35 3.72 16 34 H 0.40 5.66 8.72 -40.82 -0.36 5.30 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 37 H 0.13 3.44 6.12 -52.49 -0.32 3.12 16 38 H 0.12 2.74 8.06 -52.48 -0.42 2.32 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.61 7.15 -51.92 -0.37 0.23 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -33.65 355.77 -8.86 -42.51 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.12 Total: 12.12 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -4.36 Total: 1.65 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.21 Total: -62.76 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.65 -8.86 -42.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871729793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.722 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds