Wall clock time and date at job start Tue Mar 31 2020 11:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47059 * 2 1 4 4 N 1.46501 * 109.46983 * 119.99536 * 2 1 3 5 5 C 1.34966 * 125.97644 * 274.71735 * 4 2 1 6 6 C 1.35246 * 107.85746 * 179.83959 * 5 4 2 7 7 C 1.40402 * 107.86455 * 0.42498 * 6 5 4 8 8 N 1.40186 * 125.96830 * 179.73914 * 7 6 5 9 9 C 1.34778 * 120.00354 * 359.97226 * 8 7 6 10 10 O 1.21583 * 119.99654 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00060 * 179.97438 * 9 8 7 12 12 C 1.39447 * 120.00146 * 175.45586 * 11 9 8 13 13 C 1.38652 * 119.65359 * 186.29257 * 12 11 9 14 14 C 1.40812 * 118.67370 * 179.97438 * 13 12 11 15 15 C 1.41549 * 120.99541 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99994 * 201.15274 * 15 14 13 17 17 C 1.40030 * 119.99757 * 21.14890 * 15 14 13 18 18 N 1.30740 * 120.00283 * 12.11200 * 17 15 14 19 19 Si 1.86804 * 119.99774 * 192.10818 * 17 15 14 20 20 H 1.48503 * 109.46908 * 60.00166 * 19 17 15 21 21 H 1.48500 * 109.46928 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47340 * 300.00234 * 19 17 15 23 23 C 1.41166 * 118.01100 * 0.02562 * 14 13 12 24 24 C 1.36596 * 119.12562 * 359.97438 * 23 14 13 25 25 N 1.32065 * 121.25503 * 359.72953 * 24 23 14 26 26 N 1.31209 * 108.05735 * 359.73353 * 7 6 5 27 27 H 1.09004 * 109.47135 * 300.00358 * 1 2 3 28 28 H 1.08996 * 109.47164 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46823 * 59.99884 * 1 2 3 30 30 H 1.08994 * 109.47210 * 239.99651 * 2 1 3 31 31 H 1.08994 * 109.47395 * 59.99764 * 3 2 1 32 32 H 1.08999 * 109.47074 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47066 * 299.99639 * 3 2 1 34 34 H 1.08001 * 126.07072 * 359.97438 * 5 4 2 35 35 H 1.08005 * 126.06552 * 180.16011 * 6 5 4 36 36 H 0.97007 * 119.99960 * 179.97438 * 8 7 6 37 37 H 0.97005 * 120.00027 * 355.46144 * 11 9 8 38 38 H 1.07997 * 120.65719 * 0.02562 * 13 12 11 39 39 H 0.96996 * 120.00147 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.43723 * 179.97438 * 23 14 13 41 41 H 1.07992 * 119.37028 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1979 -0.1365 2.4138 6 6 2.6556 -1.1004 3.2447 7 6 2.7695 -2.2883 2.5049 8 7 3.2149 -3.5239 2.9949 9 6 3.5816 -3.6443 4.2862 10 8 3.5257 -2.6813 5.0263 11 7 4.0093 -4.8324 4.7573 12 6 4.4781 -4.9354 6.0666 13 6 5.0374 -6.1266 6.5032 14 6 5.5046 -6.2077 7.8291 15 6 6.0837 -7.3998 8.3263 16 1 6.1236 -7.5776 9.3908 17 6 6.6047 -8.3486 7.4379 18 7 6.7746 -8.0410 6.1786 19 14 7.0570 -10.0538 8.0521 20 1 5.8512 -10.7132 8.6147 21 1 7.5832 -10.8629 6.9235 22 1 8.0965 -9.9406 9.1063 23 6 5.3773 -5.0649 8.6479 24 6 4.8120 -3.9348 8.1290 25 7 4.3896 -3.8921 6.8784 26 7 2.3862 -2.0398 1.2749 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8901 34 1 2.0077 0.8933 2.6781 35 1 2.8953 -0.9772 4.2905 36 1 3.2592 -4.2924 2.4044 37 1 3.9911 -5.6158 4.1856 38 1 5.1138 -6.9750 5.8393 39 1 7.1358 -8.6980 5.5633 40 1 5.7222 -5.0838 9.6711 41 1 4.7123 -3.0584 8.7520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871731464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:54 Heat of formation + Delta-G solvation = 80.294667 kcal Electronic energy + Delta-G solvation = -24907.386419 eV Core-core repulsion = 21210.012423 eV Total energy + Delta-G solvation = -3697.373996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.44093 -41.35050 -39.83542 -37.03187 -36.12565 -35.61013 -35.14403 -32.39772 -31.14422 -30.71016 -29.66410 -28.16049 -27.91966 -24.58421 -23.77165 -23.68945 -22.34269 -21.36886 -20.99367 -19.54759 -19.21313 -18.31885 -17.73496 -17.15613 -16.82525 -16.69796 -16.05320 -15.97311 -15.94541 -15.35242 -15.21358 -14.69453 -14.54957 -14.37925 -14.27757 -13.98123 -13.80660 -13.15804 -13.14462 -13.05070 -12.85019 -12.66687 -12.46585 -12.14229 -12.00273 -11.91382 -11.78671 -11.71760 -11.51127 -11.18952 -11.15084 -9.92759 -9.85709 -9.62711 -9.24333 -8.81646 -8.57665 -6.56456 0.72695 0.94179 0.98087 1.03574 1.42728 1.53853 1.58995 1.71450 1.86727 2.21045 2.38021 2.85196 3.01765 3.59521 3.79540 3.90960 3.97712 4.13294 4.15521 4.29476 4.55563 4.68611 4.71906 4.77363 4.82019 4.83599 4.88155 4.95173 4.96189 5.09382 5.20855 5.24088 5.26825 5.28619 5.50923 5.63224 5.66944 5.86028 5.99013 6.19949 6.24400 6.54601 6.58936 6.81716 6.85312 6.96643 7.46157 7.87088 8.27469 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.002428 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.940037 B =11527.684188 C =12192.993016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 C -0.159 4.159 4 N -0.359 5.359 5 C 0.084 3.916 6 C -0.303 4.303 7 C 0.303 3.697 8 N -0.639 5.639 9 C 0.700 3.300 10 O -0.542 6.542 11 N -0.651 5.651 12 C 0.350 3.650 13 C -0.264 4.264 14 C 0.110 3.890 15 C -0.476 4.476 16 H 0.085 0.915 17 C 0.036 3.964 18 N -0.812 5.812 19 Si 0.990 3.010 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.296 4.296 24 C 0.115 3.885 25 N -0.579 5.579 26 N -0.349 5.349 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.213 0.787 35 H 0.148 0.852 36 H 0.421 0.579 37 H 0.422 0.578 38 H 0.138 0.862 39 H 0.292 0.708 40 H 0.116 0.884 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 10.803 -14.108 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 C -0.217 4.217 4 N -0.143 5.143 5 C -0.063 4.063 6 C -0.334 4.334 7 C 0.047 3.953 8 N -0.292 5.292 9 C 0.399 3.601 10 O -0.413 6.413 11 N -0.300 5.300 12 C 0.124 3.876 13 C -0.290 4.290 14 C 0.101 3.899 15 C -0.507 4.507 16 H 0.103 0.897 17 C -0.181 4.181 18 N -0.437 5.437 19 Si 0.811 3.189 20 H -0.184 1.184 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.320 4.320 24 C -0.038 4.038 25 N -0.299 5.299 26 N -0.180 5.180 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.229 0.771 35 H 0.166 0.834 36 H 0.258 0.742 37 H 0.260 0.740 38 H 0.155 0.845 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.316 11.967 -15.280 21.528 hybrid contribution 0.928 -2.111 0.942 2.491 sum -8.388 9.855 -14.338 19.315 Atomic orbital electron populations 1.22225 0.92595 1.02458 1.04445 1.21646 0.95553 0.93643 0.84282 1.22211 1.01825 0.92259 1.05403 1.48762 1.50786 1.05121 1.09681 1.22883 0.98351 1.00688 0.84392 1.21865 1.16670 0.91920 1.02910 1.19003 0.97594 0.86774 0.91903 1.41487 1.67738 1.10391 1.09618 1.15879 0.78846 0.83975 0.81414 1.90923 1.56712 1.37298 1.56346 1.42276 1.65234 1.10449 1.12091 1.18114 0.94030 0.91228 0.84253 1.21768 1.09871 0.97472 0.99929 1.18024 0.87728 0.92761 0.91372 1.19891 1.33917 1.01539 0.95331 0.89683 1.26860 0.92633 1.04170 0.94453 1.69754 1.31731 1.36851 1.05389 0.85120 0.79454 0.75427 0.78945 1.18368 1.19059 1.18476 1.21837 1.13209 0.95112 1.01837 1.21905 0.94112 0.97152 0.90661 1.67283 1.27281 1.29812 1.05484 1.77203 1.27792 0.96662 1.16369 0.91675 0.93657 0.87734 0.88160 0.90444 0.92364 0.87394 0.77065 0.83432 0.74163 0.73989 0.84484 0.89690 0.86557 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.52 71.98 0.69 -1.09 16 2 C 0.15 2.07 3.93 44.99 0.18 2.25 16 3 C -0.16 -1.28 8.83 71.98 0.64 -0.64 16 4 N -0.36 -8.35 3.53 -327.53 -1.15 -9.51 16 5 C 0.08 1.99 10.58 83.52 0.88 2.87 16 6 C -0.30 -10.12 9.61 22.11 0.21 -9.91 16 7 C 0.30 10.29 8.11 133.32 1.08 11.37 16 8 N -0.64 -21.14 5.45 -321.25 -1.75 -22.89 16 9 C 0.70 28.64 8.49 179.06 1.52 30.16 16 10 O -0.54 -26.12 11.73 -3.98 -0.05 -26.17 16 11 N -0.65 -26.45 5.39 -322.37 -1.74 -28.19 16 12 C 0.35 17.44 7.42 132.77 0.98 18.42 16 13 C -0.26 -13.69 8.67 23.00 0.20 -13.49 16 14 C 0.11 5.85 5.65 -21.11 -0.12 5.73 16 15 C -0.48 -24.48 9.15 23.52 0.22 -24.27 16 16 H 0.09 4.15 7.88 -2.91 -0.02 4.13 16 17 C 0.04 1.68 5.31 85.29 0.45 2.13 16 18 N -0.81 -39.38 10.50 21.84 0.23 -39.15 16 19 Si 0.99 35.67 29.58 68.60 2.03 37.70 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 21 H -0.27 -9.03 7.11 99.48 0.71 -8.33 16 22 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 23 C -0.30 -14.70 9.85 22.60 0.22 -14.48 16 24 C 0.11 5.58 11.10 84.27 0.94 6.51 16 25 N -0.58 -30.20 7.86 -194.27 -1.53 -31.73 16 26 N -0.35 -10.63 12.59 -54.44 -0.69 -11.31 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 0.50 7.14 -2.39 -0.02 0.48 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.21 3.05 7.25 -2.91 -0.02 3.03 16 35 H 0.15 5.80 5.91 -2.91 -0.02 5.78 16 36 H 0.42 10.99 8.84 -92.70 -0.82 10.17 16 37 H 0.42 13.84 8.72 -92.70 -0.81 13.03 16 38 H 0.14 7.02 5.81 -2.91 -0.02 7.01 16 39 H 0.29 12.68 8.29 -92.71 -0.77 11.91 16 40 H 0.12 5.24 8.06 -2.91 -0.02 5.22 16 41 H 0.15 6.20 8.06 -2.91 -0.02 6.18 16 Total: -1.00 -72.69 348.96 2.90 -69.78 By element: Atomic # 1 Polarization: 46.42 SS G_CDS: -0.53 Total: 45.88 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 8.09 Total: 15.57 kcal Atomic # 7 Polarization: -136.14 SS G_CDS: -6.63 Total: -142.77 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -72.69 2.90 -69.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.079 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds