Wall clock time and date at job start Tue Mar 31 2020 10:41:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.39870 * 125.89788 * 2 1
4 4 C 1.35316 * 107.91913 * 180.13755 * 3 2 1
5 5 C 1.50697 * 126.12362 * 179.90047 * 4 3 2
6 6 N 1.46504 * 109.46800 * 94.69554 * 5 4 3
7 7 C 1.34774 * 119.99981 * 179.97438 * 6 5 4
8 8 O 1.21575 * 120.00256 * 359.97438 * 7 6 5
9 9 N 1.34782 * 119.99850 * 179.72569 * 7 6 5
10 10 C 1.39243 * 119.99791 * 174.47957 * 9 7 6
11 11 C 1.39690 * 119.57752 * 341.17272 * 10 9 7
12 12 C 1.38645 * 119.49492 * 179.72545 * 11 10 9
13 13 C 1.38355 * 118.67148 * 0.53639 * 12 11 10
14 14 C 1.40570 * 119.13078 * 359.72872 * 13 12 11
15 15 C 1.41335 * 119.78921 * 180.02562 * 14 13 12
16 16 H 1.08004 * 120.00032 * 6.32313 * 15 14 13
17 17 C 1.40024 * 120.00343 * 186.32039 * 15 14 13
18 18 N 1.30747 * 119.99769 * 353.67427 * 17 15 14
19 19 Si 1.86801 * 120.00110 * 173.66766 * 17 15 14
20 20 H 1.48493 * 109.46727 * 94.98905 * 19 17 15
21 21 H 1.48502 * 109.46840 * 214.98733 * 19 17 15
22 22 H 1.48498 * 109.47236 * 334.98672 * 19 17 15
23 23 N 1.31906 * 119.57362 * 161.44008 * 10 9 7
24 24 N 1.34946 * 107.74404 * 359.64264 * 4 3 2
25 25 C 1.46502 * 126.03383 * 180.20376 * 24 4 3
26 26 N 1.30834 * 125.89804 * 179.73478 * 2 1 3
27 27 H 1.08998 * 109.47664 * 270.23484 * 1 2 3
28 28 H 1.09003 * 109.47180 * 30.24040 * 1 2 3
29 29 H 1.08997 * 109.46961 * 150.23465 * 1 2 3
30 30 H 1.08007 * 126.03614 * 0.02562 * 3 2 1
31 31 H 1.08998 * 109.47829 * 334.69518 * 5 4 3
32 32 H 1.09001 * 109.47107 * 214.68668 * 5 4 3
33 33 H 0.97001 * 119.99872 * 359.97438 * 6 5 4
34 34 H 0.96999 * 120.00165 * 354.47323 * 9 7 6
35 35 H 1.08003 * 120.25139 * 0.02562 * 11 10 9
36 36 H 1.08000 * 120.66376 * 180.23930 * 12 11 10
37 37 H 1.07999 * 120.43520 * 179.74467 * 13 12 11
38 38 H 0.96996 * 119.99791 * 180.02562 * 18 17 15
39 39 H 1.08993 * 109.47172 * 90.00119 * 25 24 4
40 40 H 1.08997 * 109.46800 * 209.99708 * 25 24 4
41 41 H 1.08998 * 109.46984 * 329.99840 * 25 24 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3272 1.1330 0.0000
4 6 3.6143 0.7154 -0.0031
5 6 4.8350 1.5990 -0.0063
6 7 5.3002 1.7940 1.3691
7 6 6.3863 2.5542 1.6117
8 8 6.9803 3.0778 0.6891
9 7 6.8111 2.7381 2.8776
10 6 7.9967 3.4266 3.1210
11 6 8.9300 3.5775 2.0926
12 6 10.1074 4.2682 2.3353
13 6 10.3274 4.7807 3.6015
14 6 9.3520 4.5906 4.5957
15 6 9.5622 5.1087 5.8937
16 1 10.4195 5.7348 6.0930
17 6 8.6591 4.8105 6.9214
18 7 7.5581 4.1576 6.6550
19 14 9.0273 5.3454 8.6729
20 1 8.3603 6.6440 8.9443
21 1 8.5199 4.3206 9.6204
22 1 10.4944 5.4966 8.8462
23 7 8.2264 3.9234 4.3211
24 7 3.6087 -0.6341 0.0030
25 6 4.7899 -1.5007 0.0066
26 7 2.2742 -1.0598 0.0049
27 1 -0.3634 0.0042 1.0276
28 1 -0.3634 0.8878 -0.5176
29 1 -0.3633 -0.8921 -0.5102
30 1 1.9922 2.1599 0.0004
31 1 4.5836 2.5645 -0.4452
32 1 5.6233 1.1273 -0.5930
33 1 4.8266 1.3760 2.1052
34 1 6.2908 2.3910 3.6190
35 1 8.7337 3.1634 1.1146
36 1 10.8403 4.3994 1.5530
37 1 11.2366 5.3199 3.8230
38 1 6.9323 3.9513 7.3668
39 1 5.0832 -1.7110 1.0351
40 1 4.5562 -2.4355 -0.5029
41 1 5.6092 -1.0004 -0.5098
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881145707.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:41:33
Heat of formation + Delta-G solvation = 97.187790 kcal
Electronic energy + Delta-G solvation = -24920.981503 eV
Core-core repulsion = 21224.340048 eV
Total energy + Delta-G solvation = -3696.641455 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.58340 -40.02893 -37.92071 -35.28064 -34.25253 -33.96113 -33.25241 -31.06402
-30.39509 -29.73646 -29.02173 -26.41068 -25.59775 -25.32554 -22.07592 -21.57856
-20.72362 -20.32408 -19.69143 -18.27173 -17.38688 -17.01008 -16.28884 -15.94007
-15.46298 -15.08001 -14.67676 -14.52230 -14.38711 -14.23876 -13.78179 -13.72154
-13.45503 -13.18735 -12.99420 -12.89776 -12.57941 -12.38765 -12.26648 -12.04094
-11.99103 -11.28068 -11.12577 -10.92738 -10.79595 -10.67534 -10.13642 -9.87256
-9.51494 -9.31542 -9.12250 -9.02652 -8.75350 -8.03790 -7.68644 -7.08027
-6.43052 -4.50532 1.44609 2.22500 2.44131 2.66260 2.94176 3.05099
3.08308 3.11633 3.24127 3.63613 3.94467 4.17815 4.24282 4.51951
4.74452 4.78081 4.87417 4.93348 5.10956 5.17984 5.36417 5.41573
5.45586 5.57811 5.65511 5.89516 5.96412 6.13697 6.32461 6.41801
6.43763 6.67936 6.72133 6.81152 6.90381 7.06679 7.19268 7.47989
7.49350 7.59915 7.89386 8.04413 8.15022 8.38802 8.69216 8.85091
9.00222 10.04248 10.30365
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.017966 B = 0.002720 C = 0.002474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1558.125205 B =10292.026269 C =11314.355851
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.068 3.932
3 C -0.247 4.247
4 C 0.067 3.933
5 C 0.207 3.793
6 N -0.746 5.746
7 C 0.709 3.291
8 O -0.568 6.568
9 N -0.657 5.657
10 C 0.373 3.627
11 C -0.312 4.312
12 C -0.049 4.049
13 C -0.291 4.291
14 C 0.280 3.720
15 C -0.436 4.436
16 H 0.085 0.915
17 C 0.071 3.929
18 N -0.723 5.723
19 Si 0.907 3.093
20 H -0.270 1.270
21 H -0.277 1.277
22 H -0.261 1.261
23 N -0.509 5.509
24 N -0.364 5.364
25 C 0.098 3.902
26 N -0.291 5.291
27 H 0.077 0.923
28 H 0.078 0.922
29 H 0.071 0.929
30 H 0.150 0.850
31 H 0.095 0.905
32 H 0.078 0.922
33 H 0.397 0.603
34 H 0.404 0.596
35 H 0.133 0.867
36 H 0.098 0.902
37 H 0.099 0.901
38 H 0.270 0.730
39 H 0.077 0.923
40 H 0.089 0.911
41 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.106 -9.294 -9.361 17.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.098 4.098
3 C -0.277 4.277
4 C -0.061 4.061
5 C 0.081 3.919
6 N -0.404 5.404
7 C 0.409 3.591
8 O -0.444 6.444
9 N -0.304 5.304
10 C 0.138 3.862
11 C -0.337 4.337
12 C -0.074 4.074
13 C -0.314 4.314
14 C 0.154 3.846
15 C -0.468 4.468
16 H 0.103 0.897
17 C -0.153 4.153
18 N -0.345 5.345
19 Si 0.731 3.269
20 H -0.196 1.196
21 H -0.202 1.202
22 H -0.185 1.185
23 N -0.228 5.228
24 N -0.147 5.147
25 C -0.044 4.044
26 N -0.114 5.114
27 H 0.095 0.905
28 H 0.097 0.903
29 H 0.090 0.910
30 H 0.168 0.832
31 H 0.113 0.887
32 H 0.097 0.903
33 H 0.231 0.769
34 H 0.239 0.761
35 H 0.150 0.850
36 H 0.116 0.884
37 H 0.118 0.882
38 H 0.081 0.919
39 H 0.096 0.904
40 H 0.108 0.892
41 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -11.187 -10.399 -9.470 17.971
hybrid contribution 0.276 0.791 0.922 1.246
sum -10.912 -9.608 -8.549 16.865
Atomic orbital electron populations
1.20177 0.86542 1.03273 1.03045 1.22343 0.97038 0.90672 0.99735
1.21242 0.90723 1.00113 1.15646 1.21040 0.96853 0.84610 1.03566
1.19517 0.90677 0.98034 0.83650 1.45092 1.31456 1.55400 1.08477
1.15685 0.80343 0.79592 0.83454 1.90854 1.57294 1.52689 1.43560
1.42241 1.24754 1.57006 1.06354 1.18204 0.83982 0.91897 0.92090
1.21603 0.96784 1.14240 1.01111 1.20807 0.95477 0.95529 0.95563
1.21704 1.02274 1.12362 0.95019 1.18168 0.85715 0.88126 0.92632
1.19554 1.08207 1.26909 0.92089 0.89667 1.26037 0.94231 0.93979
1.01058 1.70122 1.06030 1.25186 1.33182 0.86329 0.80004 0.79026
0.81540 1.19565 1.20182 1.18497 1.68011 1.22410 1.15698 1.16633
1.48457 1.05592 1.04139 1.56475 1.21921 0.83770 0.94860 1.03815
1.77329 0.86226 1.22722 1.25169 0.90474 0.90331 0.91012 0.83180
0.88741 0.90346 0.76873 0.76120 0.84995 0.88355 0.88245 0.91892
0.90418 0.89196 0.89170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.52 10.45 36.01 0.38 -0.14 16
2 C 0.07 0.73 7.22 -82.40 -0.59 0.13 16
3 C -0.25 -2.60 10.65 -40.01 -0.43 -3.03 16
4 C 0.07 0.72 6.30 -82.27 -0.52 0.20 16
5 C 0.21 2.28 5.84 -5.19 -0.03 2.25 16
6 N -0.75 -9.53 5.55 -66.41 -0.37 -9.89 16
7 C 0.71 12.64 8.40 -86.91 -0.73 11.91 16
8 O -0.57 -11.92 13.14 5.30 0.07 -11.85 16
9 N -0.66 -13.04 5.42 -15.78 -0.09 -13.13 16
10 C 0.37 9.20 7.51 -154.99 -1.16 8.04 16
11 C -0.31 -7.60 8.83 -38.89 -0.34 -7.94 16
12 C -0.05 -1.16 10.15 -39.39 -0.40 -1.56 16
13 C -0.29 -7.30 9.83 -38.66 -0.38 -7.68 16
14 C 0.28 7.70 6.54 -85.00 -0.56 7.15 16
15 C -0.44 -11.59 9.13 -37.74 -0.34 -11.94 16
16 H 0.09 2.12 7.85 -52.48 -0.41 1.71 16
17 C 0.07 1.79 5.49 -17.34 -0.10 1.70 16
18 N -0.72 -18.70 11.49 55.55 0.64 -18.06 16
19 Si 0.91 18.39 29.56 -169.99 -5.03 13.36 16
20 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16
21 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16
22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16
23 N -0.51 -13.83 7.92 -10.26 -0.08 -13.91 16
24 N -0.36 -3.95 4.01 -63.89 -0.26 -4.21 16
25 C 0.10 0.76 11.27 59.85 0.67 1.44 16
26 N -0.29 -3.56 12.58 33.67 0.42 -3.14 16
27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16
28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
30 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16
31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16
32 H 0.08 0.84 7.24 -51.93 -0.38 0.46 16
33 H 0.40 4.43 8.48 -40.82 -0.35 4.08 16
34 H 0.40 7.22 8.84 -40.82 -0.36 6.86 16
35 H 0.13 3.16 5.33 -52.50 -0.28 2.88 16
36 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16
37 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16
38 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16
39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
41 H 0.09 0.60 7.15 -51.93 -0.37 0.23 16
LS Contribution 354.82 15.07 5.35 5.35
Total: -1.00 -33.27 354.82 -8.96 -42.23
By element:
Atomic # 1 Polarization: 17.82 SS G_CDS: -5.09 Total: 12.73 kcal
Atomic # 6 Polarization: 5.06 SS G_CDS: -4.53 Total: 0.53 kcal
Atomic # 7 Polarization: -62.61 SS G_CDS: 0.27 Total: -62.34 kcal
Atomic # 8 Polarization: -11.92 SS G_CDS: 0.07 Total: -11.85 kcal
Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -33.27 -8.96 -42.23 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881145707.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.416 kcal
(2) G-P(sol) polarization free energy of solvation -33.272 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.145 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal
(6) G-S(sol) free energy of system = (1) + (5) 97.188 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds