Wall clock time and date at job start Tue Mar 31 2020 10:41:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.39870 * 125.89788 * 2 1
4 4 C 1.35316 * 107.91913 * 180.13755 * 3 2 1
5 5 C 1.50697 * 126.12362 * 179.90047 * 4 3 2
6 6 N 1.46504 * 109.46800 * 94.69554 * 5 4 3
7 7 C 1.34774 * 119.99981 * 179.97438 * 6 5 4
8 8 O 1.21575 * 120.00256 * 359.97438 * 7 6 5
9 9 N 1.34782 * 119.99850 * 179.72569 * 7 6 5
10 10 C 1.39243 * 119.99791 * 174.47957 * 9 7 6
11 11 C 1.39690 * 119.57752 * 341.17272 * 10 9 7
12 12 C 1.38645 * 119.49492 * 179.72545 * 11 10 9
13 13 C 1.38355 * 118.67148 * 0.53639 * 12 11 10
14 14 C 1.40570 * 119.13078 * 359.72872 * 13 12 11
15 15 C 1.41335 * 119.78921 * 180.02562 * 14 13 12
16 16 H 1.08004 * 120.00032 * 6.32313 * 15 14 13
17 17 C 1.40024 * 120.00343 * 186.32039 * 15 14 13
18 18 N 1.30747 * 119.99769 * 353.67427 * 17 15 14
19 19 Si 1.86801 * 120.00110 * 173.66766 * 17 15 14
20 20 H 1.48493 * 109.46727 * 94.98905 * 19 17 15
21 21 H 1.48502 * 109.46840 * 214.98733 * 19 17 15
22 22 H 1.48498 * 109.47236 * 334.98672 * 19 17 15
23 23 N 1.31906 * 119.57362 * 161.44008 * 10 9 7
24 24 N 1.34946 * 107.74404 * 359.64264 * 4 3 2
25 25 C 1.46502 * 126.03383 * 180.20376 * 24 4 3
26 26 N 1.30834 * 125.89804 * 179.73478 * 2 1 3
27 27 H 1.08998 * 109.47664 * 270.23484 * 1 2 3
28 28 H 1.09003 * 109.47180 * 30.24040 * 1 2 3
29 29 H 1.08997 * 109.46961 * 150.23465 * 1 2 3
30 30 H 1.08007 * 126.03614 * 0.02562 * 3 2 1
31 31 H 1.08998 * 109.47829 * 334.69518 * 5 4 3
32 32 H 1.09001 * 109.47107 * 214.68668 * 5 4 3
33 33 H 0.97001 * 119.99872 * 359.97438 * 6 5 4
34 34 H 0.96999 * 120.00165 * 354.47323 * 9 7 6
35 35 H 1.08003 * 120.25139 * 0.02562 * 11 10 9
36 36 H 1.08000 * 120.66376 * 180.23930 * 12 11 10
37 37 H 1.07999 * 120.43520 * 179.74467 * 13 12 11
38 38 H 0.96996 * 119.99791 * 180.02562 * 18 17 15
39 39 H 1.08993 * 109.47172 * 90.00119 * 25 24 4
40 40 H 1.08997 * 109.46800 * 209.99708 * 25 24 4
41 41 H 1.08998 * 109.46984 * 329.99840 * 25 24 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3272 1.1330 0.0000
4 6 3.6143 0.7154 -0.0031
5 6 4.8350 1.5990 -0.0063
6 7 5.3002 1.7940 1.3691
7 6 6.3863 2.5542 1.6117
8 8 6.9803 3.0778 0.6891
9 7 6.8111 2.7381 2.8776
10 6 7.9967 3.4266 3.1210
11 6 8.9300 3.5775 2.0926
12 6 10.1074 4.2682 2.3353
13 6 10.3274 4.7807 3.6015
14 6 9.3520 4.5906 4.5957
15 6 9.5622 5.1087 5.8937
16 1 10.4195 5.7348 6.0930
17 6 8.6591 4.8105 6.9214
18 7 7.5581 4.1576 6.6550
19 14 9.0273 5.3454 8.6729
20 1 8.3603 6.6440 8.9443
21 1 8.5199 4.3206 9.6204
22 1 10.4944 5.4966 8.8462
23 7 8.2264 3.9234 4.3211
24 7 3.6087 -0.6341 0.0030
25 6 4.7899 -1.5007 0.0066
26 7 2.2742 -1.0598 0.0049
27 1 -0.3634 0.0042 1.0276
28 1 -0.3634 0.8878 -0.5176
29 1 -0.3633 -0.8921 -0.5102
30 1 1.9922 2.1599 0.0004
31 1 4.5836 2.5645 -0.4452
32 1 5.6233 1.1273 -0.5930
33 1 4.8266 1.3760 2.1052
34 1 6.2908 2.3910 3.6190
35 1 8.7337 3.1634 1.1146
36 1 10.8403 4.3994 1.5530
37 1 11.2366 5.3199 3.8230
38 1 6.9323 3.9513 7.3668
39 1 5.0832 -1.7110 1.0351
40 1 4.5562 -2.4355 -0.5029
41 1 5.6092 -1.0004 -0.5098
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000881145707.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:41:32
Heat of formation + Delta-G solvation = 75.204838 kcal
Electronic energy + Delta-G solvation = -24921.934755 eV
Core-core repulsion = 21224.340048 eV
Total energy + Delta-G solvation = -3697.594707 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.41382 -41.54452 -39.69607 -36.50925 -35.87948 -35.11425 -34.72229 -32.33670
-32.06685 -30.82883 -30.29278 -27.66541 -27.04360 -26.25781 -23.70605 -23.45891
-21.88948 -21.50044 -20.62232 -19.73935 -19.10183 -18.37260 -17.42948 -17.12717
-16.73725 -16.51395 -16.30064 -16.03380 -15.77276 -15.30965 -15.04708 -14.64213
-14.58096 -14.37625 -14.31948 -13.92325 -13.78779 -13.66199 -13.22354 -13.01598
-12.92643 -12.89165 -12.79856 -12.64684 -12.56397 -11.84784 -11.61889 -11.58260
-11.09324 -10.88394 -10.29397 -10.21469 -9.95072 -9.61700 -9.55341 -8.92773
-8.30156 -6.48411 0.56277 0.83828 1.14344 1.43650 1.45384 1.53571
1.55845 1.58963 1.86455 2.09220 2.25329 2.89809 3.16641 3.31891
3.55970 3.93277 3.99405 4.20486 4.31145 4.34104 4.42844 4.50613
4.63352 4.66257 4.68490 4.83803 4.88506 4.90085 4.94315 4.97653
5.07155 5.22172 5.24741 5.28124 5.57543 5.69877 5.70775 5.82957
5.95714 5.99391 6.21213 6.30178 6.67904 6.74405 6.87547 7.01054
7.44484 8.12305 8.45975
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.017966 B = 0.002720 C = 0.002474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1558.125205 B =10292.026269 C =11314.355851
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C 0.059 3.941
3 C -0.254 4.254
4 C 0.064 3.936
5 C 0.211 3.789
6 N -0.722 5.722
7 C 0.713 3.287
8 O -0.598 6.598
9 N -0.655 5.655
10 C 0.365 3.635
11 C -0.324 4.324
12 C -0.048 4.048
13 C -0.310 4.310
14 C 0.246 3.754
15 C -0.467 4.467
16 H 0.091 0.909
17 C 0.027 3.973
18 N -0.753 5.753
19 Si 0.987 3.013
20 H -0.265 1.265
21 H -0.268 1.268
22 H -0.257 1.257
23 N -0.535 5.535
24 N -0.369 5.369
25 C 0.090 3.910
26 N -0.320 5.320
27 H 0.085 0.915
28 H 0.096 0.904
29 H 0.074 0.926
30 H 0.164 0.836
31 H 0.097 0.903
32 H 0.086 0.914
33 H 0.408 0.592
34 H 0.412 0.588
35 H 0.138 0.862
36 H 0.131 0.869
37 H 0.112 0.888
38 H 0.279 0.721
39 H 0.082 0.918
40 H 0.099 0.901
41 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.774 -9.482 -9.112 17.652
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.106 4.106
3 C -0.284 4.284
4 C -0.064 4.064
5 C 0.086 3.914
6 N -0.380 5.380
7 C 0.413 3.587
8 O -0.477 6.477
9 N -0.302 5.302
10 C 0.129 3.871
11 C -0.348 4.348
12 C -0.072 4.072
13 C -0.333 4.333
14 C 0.119 3.881
15 C -0.498 4.498
16 H 0.109 0.891
17 C -0.195 4.195
18 N -0.375 5.375
19 Si 0.807 3.193
20 H -0.190 1.190
21 H -0.193 1.193
22 H -0.180 1.180
23 N -0.255 5.255
24 N -0.151 5.151
25 C -0.050 4.050
26 N -0.145 5.145
27 H 0.104 0.896
28 H 0.114 0.886
29 H 0.093 0.907
30 H 0.182 0.818
31 H 0.115 0.885
32 H 0.104 0.896
33 H 0.244 0.756
34 H 0.248 0.752
35 H 0.155 0.845
36 H 0.149 0.851
37 H 0.131 0.869
38 H 0.089 0.911
39 H 0.101 0.899
40 H 0.118 0.882
41 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -11.902 -10.634 -9.250 18.447
hybrid contribution 0.409 0.787 0.731 1.150
sum -11.493 -9.847 -8.518 17.367
Atomic orbital electron populations
1.20300 0.84435 1.04307 1.03886 1.22898 0.98523 0.90314 0.98825
1.21525 0.90704 1.00881 1.15318 1.20965 0.96685 0.84704 1.04073
1.19577 0.91071 0.98412 0.82299 1.44901 1.29635 1.53579 1.09853
1.15728 0.81031 0.79704 0.82273 1.90820 1.58640 1.54097 1.44118
1.42151 1.23806 1.56745 1.07546 1.18530 0.85392 0.91584 0.91603
1.21830 0.97148 1.14580 1.01276 1.21180 0.95871 0.94303 0.95866
1.21879 1.02627 1.13374 0.95391 1.18678 0.86647 0.88913 0.93824
1.19926 1.09236 1.27856 0.92815 0.89102 1.26943 0.93656 0.93655
1.05262 1.70193 1.06807 1.25554 1.34992 0.85123 0.79900 0.78697
0.75539 1.18954 1.19265 1.18017 1.68030 1.22850 1.16792 1.17839
1.48696 1.05848 1.04417 1.56186 1.22142 0.83238 0.95178 1.04462
1.77296 0.87007 1.23807 1.26344 0.89632 0.88570 0.90718 0.81830
0.88491 0.89623 0.75589 0.75209 0.84493 0.85117 0.86942 0.91084
0.89949 0.88236 0.88061
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.90 10.45 71.24 0.74 -0.16 16
2 C 0.06 1.19 7.22 43.10 0.31 1.50 16
3 C -0.25 -4.95 10.65 21.99 0.23 -4.72 16
4 C 0.06 1.27 6.30 41.40 0.26 1.53 16
5 C 0.21 4.34 5.84 85.63 0.50 4.84 16
6 N -0.72 -17.48 5.55 -482.30 -2.68 -20.16 16
7 C 0.71 24.88 8.40 179.05 1.50 26.38 16
8 O -0.60 -24.75 13.14 -3.95 -0.05 -24.81 16
9 N -0.66 -25.96 5.42 -322.11 -1.75 -27.71 16
10 C 0.37 18.17 7.51 133.26 1.00 19.17 16
11 C -0.32 -15.72 8.83 22.72 0.20 -15.52 16
12 C -0.05 -2.24 10.15 22.39 0.23 -2.01 16
13 C -0.31 -15.69 9.83 22.87 0.22 -15.47 16
14 C 0.25 13.78 6.54 40.19 0.26 14.04 16
15 C -0.47 -25.19 9.13 23.47 0.21 -24.97 16
16 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16
17 C 0.03 1.33 5.49 85.29 0.47 1.80 16
18 N -0.75 -39.21 11.49 21.84 0.25 -38.96 16
19 Si 0.99 37.39 29.56 68.60 2.03 39.42 16
20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16
21 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16
22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16
23 N -0.54 -29.65 7.92 -186.36 -1.48 -31.12 16
24 N -0.37 -7.56 4.01 -356.05 -1.43 -8.99 16
25 C 0.09 1.29 11.27 127.77 1.44 2.73 16
26 N -0.32 -7.53 12.58 -47.38 -0.60 -8.12 16
27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16
29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
30 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16
31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16
32 H 0.09 1.69 7.24 -2.39 -0.02 1.67 16
33 H 0.41 8.48 8.48 -92.71 -0.79 7.69 16
34 H 0.41 14.71 8.84 -92.71 -0.82 13.89 16
35 H 0.14 6.51 5.33 -3.16 -0.02 6.49 16
36 H 0.13 5.12 8.06 -2.91 -0.02 5.09 16
37 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16
38 H 0.28 13.00 8.29 -92.71 -0.77 12.23 16
39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
41 H 0.10 1.20 7.15 -2.39 -0.02 1.18 16
Total: -1.00 -71.87 354.82 1.38 -70.49
By element:
Atomic # 1 Polarization: 41.31 SS G_CDS: -0.52 Total: 40.80 kcal
Atomic # 6 Polarization: 1.57 SS G_CDS: 7.59 Total: 9.16 kcal
Atomic # 7 Polarization: -127.39 SS G_CDS: -7.67 Total: -135.06 kcal
Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.81 kcal
Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal
Total: -71.87 1.38 -70.49 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881145707.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.693 kcal
(2) G-P(sol) polarization free energy of solvation -71.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds