Wall clock time and date at job start Tue Mar 31 2020 10:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47328 * 2 1 4 4 N 1.30830 * 125.82914 * 270.04628 * 3 2 1 5 5 N 1.40080 * 108.36459 * 179.97438 * 4 3 2 6 6 C 1.46493 * 126.05750 * 180.02562 * 5 4 3 7 7 C 1.35844 * 107.87953 * 359.97438 * 5 4 3 8 8 C 1.35733 * 107.56157 * 0.02562 * 7 5 4 9 9 N 1.40838 * 126.07404 * 180.26554 * 8 7 5 10 10 C 1.34782 * 119.99748 * 359.68488 * 9 8 7 11 11 O 1.21592 * 120.00008 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99670 * 179.97438 * 10 9 8 13 13 C 1.39238 * 119.99979 * 174.84759 * 12 10 9 14 14 C 1.39685 * 119.57541 * 185.34161 * 13 12 10 15 15 C 1.38651 * 119.49094 * 180.02562 * 14 13 12 16 16 C 1.38345 * 118.67419 * 359.97438 * 15 14 13 17 17 C 1.40570 * 119.13225 * 359.97438 * 16 15 14 18 18 C 1.41339 * 119.79119 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99627 * 0.02562 * 18 17 16 20 20 C 1.40024 * 120.00257 * 179.97438 * 18 17 16 21 21 N 1.30747 * 120.00053 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47256 * 60.00414 * 22 20 18 24 24 H 1.48498 * 109.47138 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47514 * 300.00295 * 22 20 18 26 26 N 1.31906 * 119.57412 * 5.07186 * 13 12 10 27 27 H 1.08999 * 109.46371 * 300.00162 * 1 2 3 28 28 H 1.08997 * 109.46962 * 59.99288 * 1 2 3 29 29 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46920 * 240.00206 * 2 1 3 31 31 H 1.08990 * 109.47253 * 120.00514 * 2 1 3 32 32 H 1.08997 * 109.47507 * 89.97813 * 6 5 4 33 33 H 1.09003 * 109.47053 * 209.97493 * 6 5 4 34 34 H 1.08998 * 109.47499 * 329.96980 * 6 5 4 35 35 H 1.07996 * 126.21628 * 180.02562 * 7 5 4 36 36 H 0.96995 * 120.00363 * 179.68443 * 9 8 7 37 37 H 0.97000 * 120.00115 * 354.85309 * 12 10 9 38 38 H 1.07995 * 120.25719 * 359.97438 * 14 13 12 39 39 H 1.08005 * 120.65852 * 180.02562 * 15 14 13 40 40 H 1.08003 * 120.43583 * 179.97438 * 16 15 14 41 41 H 0.97002 * 119.99758 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2869 2.1432 -1.0607 5 7 2.7321 3.4030 -0.6403 6 6 3.1235 4.5141 -1.5112 7 6 2.7356 3.4123 0.7181 8 6 2.3060 2.1947 1.1370 9 7 2.1556 1.7839 2.4757 10 6 2.4560 2.6325 3.4788 11 8 2.8563 3.7529 3.2280 12 7 2.3116 2.2395 4.7598 13 6 2.7222 3.0753 5.7950 14 6 2.6727 2.6157 7.1131 15 6 3.0815 3.4496 8.1426 16 6 3.5296 4.7204 7.8292 17 6 3.5565 5.1240 6.4829 18 6 4.0111 6.4194 6.1471 19 1 4.3368 7.0956 6.9238 20 6 4.0403 6.8258 4.8075 21 7 3.6466 6.0071 3.8672 22 14 4.6418 8.5377 4.3637 23 1 6.0456 8.7027 4.8192 24 1 4.5741 8.7200 2.8915 25 1 3.7836 9.5516 5.0275 26 7 3.1579 4.2891 5.5178 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 2.2515 5.1315 -1.7266 33 1 3.8815 5.1175 -1.0119 34 1 3.5288 4.1199 -2.4432 35 1 3.0271 4.2382 1.3498 36 1 1.8360 0.8902 2.6758 37 1 1.9216 1.3743 4.9607 38 1 2.3180 1.6187 7.3288 39 1 3.0516 3.1134 9.1685 40 1 3.8544 5.3937 8.6087 41 1 3.6665 6.2888 2.9392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881148029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:06 Heat of formation + Delta-G solvation = 113.440356 kcal Electronic energy + Delta-G solvation = -26170.561537 eV Core-core repulsion = 22474.624846 eV Total energy + Delta-G solvation = -3695.936691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09280 -39.38037 -37.70460 -34.95611 -34.24759 -33.43788 -33.04212 -31.45948 -30.30730 -29.41217 -28.36798 -26.29947 -25.47958 -23.43182 -22.50468 -21.51532 -20.84281 -19.62644 -19.51680 -17.87884 -17.44144 -16.52658 -16.07955 -15.40673 -15.01702 -14.65280 -14.49950 -14.45483 -14.27735 -14.13084 -13.69663 -13.21483 -13.12991 -12.85912 -12.66921 -12.57644 -12.29830 -11.95281 -11.90839 -11.46504 -11.19813 -11.17835 -10.98773 -10.67415 -10.48892 -10.45386 -10.30057 -9.96328 -9.62010 -9.10739 -9.03141 -8.94721 -7.97481 -7.29760 -7.24419 -6.91716 -6.14613 -4.40569 2.13906 2.61285 2.78075 2.98255 3.13048 3.16329 3.16701 3.26864 3.31501 4.04537 4.23767 4.53027 4.80572 4.87541 4.93337 5.06794 5.25558 5.28628 5.36281 5.48737 5.52491 5.75636 5.82764 6.01726 6.04895 6.12744 6.14722 6.20635 6.45866 6.48739 6.59034 6.79584 6.84009 7.09107 7.22892 7.34287 7.47973 7.60307 7.69990 7.80651 7.94887 8.15090 8.27492 8.60693 8.77409 9.04293 9.49289 10.23993 10.46368 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.004825 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.514611 B = 5801.616858 C = 7922.003161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 C 0.053 3.947 4 N -0.294 5.294 5 N -0.381 5.381 6 C 0.112 3.888 7 C 0.041 3.959 8 C 0.026 3.974 9 N -0.668 5.668 10 C 0.665 3.335 11 O -0.455 6.455 12 N -0.669 5.669 13 C 0.386 3.614 14 C -0.355 4.355 15 C -0.036 4.036 16 C -0.306 4.306 17 C 0.273 3.727 18 C -0.425 4.425 19 H 0.081 0.919 20 C 0.059 3.941 21 N -0.652 5.652 22 Si 0.895 3.105 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.267 1.267 26 N -0.470 5.470 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.209 0.791 36 H 0.394 0.606 37 H 0.397 0.603 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 -8.382 -8.754 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.115 4.115 4 N -0.118 5.118 5 N -0.167 5.167 6 C -0.030 4.030 7 C -0.105 4.105 8 C -0.079 4.079 9 N -0.319 5.319 10 C 0.364 3.636 11 O -0.318 6.318 12 N -0.317 5.317 13 C 0.147 3.853 14 C -0.382 4.382 15 C -0.060 4.060 16 C -0.329 4.329 17 C 0.148 3.852 18 C -0.456 4.456 19 H 0.099 0.901 20 C -0.170 4.170 21 N -0.271 5.271 22 Si 0.719 3.281 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.192 1.192 26 N -0.189 5.189 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.225 0.775 36 H 0.228 0.772 37 H 0.230 0.770 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.193 -6.830 -11.432 13.694 hybrid contribution -0.134 -0.449 1.822 1.881 sum -3.327 -7.279 -9.610 12.506 Atomic orbital electron populations 1.21722 0.94435 1.01638 1.02533 1.19864 0.95947 0.88984 1.03040 1.21953 1.03042 0.97211 0.89302 1.77064 1.21034 0.91294 1.22390 1.48225 1.52823 1.10657 1.05029 1.21740 1.00962 0.86002 0.94303 1.23359 1.03128 1.00428 0.83557 1.17232 1.12381 0.94566 0.83677 1.42203 1.71013 1.16617 1.02093 1.16331 0.81393 0.85339 0.80544 1.91220 1.44731 1.15665 1.80232 1.42431 1.65079 1.20474 1.03696 1.18305 0.93080 0.90166 0.83769 1.20435 1.24225 1.01447 0.92045 1.20548 0.95362 0.93646 0.96430 1.21629 1.16109 0.97639 0.97502 1.18365 0.88337 0.92290 0.86253 1.19532 1.36071 0.97162 0.92825 0.90052 1.26158 0.95529 0.98301 0.97005 1.70374 1.24438 1.31949 1.00296 0.86607 0.80157 0.83459 0.77866 1.19210 1.20478 1.19209 1.68659 1.17015 0.99895 1.33304 0.92408 0.92470 0.92152 0.90408 0.90501 0.91177 0.89362 0.89842 0.77519 0.77221 0.77010 0.89078 0.88589 0.88579 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.90 37.16 0.37 -1.01 16 2 C -0.04 -0.41 6.34 -27.88 -0.18 -0.59 16 3 C 0.05 0.79 6.48 -82.27 -0.53 0.25 16 4 N -0.29 -4.70 12.57 33.74 0.42 -4.27 16 5 N -0.38 -5.95 4.04 -67.82 -0.27 -6.22 16 6 C 0.11 1.23 11.48 59.84 0.69 1.92 16 7 C 0.04 0.74 10.38 -16.67 -0.17 0.56 16 8 C 0.03 0.44 6.90 -83.86 -0.58 -0.14 16 9 N -0.67 -10.58 5.48 -14.40 -0.08 -10.66 16 10 C 0.67 13.45 8.49 -86.92 -0.74 12.71 16 11 O -0.45 -10.98 9.25 5.28 0.05 -10.93 16 12 N -0.67 -12.92 5.39 -15.78 -0.09 -13.01 16 13 C 0.39 9.24 7.43 -155.00 -1.15 8.09 16 14 C -0.36 -7.82 9.96 -38.89 -0.39 -8.21 16 15 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 16 C -0.31 -7.59 9.83 -38.66 -0.38 -7.98 16 17 C 0.27 7.54 6.55 -85.00 -0.56 6.98 16 18 C -0.43 -11.50 9.14 -37.73 -0.34 -11.85 16 19 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 20 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 21 N -0.65 -17.33 8.98 55.55 0.50 -16.84 16 22 Si 0.89 18.80 29.56 -169.99 -5.02 13.77 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 26 N -0.47 -12.91 5.73 -10.26 -0.06 -12.96 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.21 4.17 5.84 -52.49 -0.31 3.86 16 36 H 0.39 4.74 8.24 -40.82 -0.34 4.40 16 37 H 0.40 5.80 8.71 -40.82 -0.36 5.45 16 38 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 40 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 41 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -33.44 348.64 -8.93 -42.36 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.17 Total: 12.52 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -4.46 Total: 0.98 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.43 Total: -63.95 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.05 Total: -10.93 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.44 -8.93 -42.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.804 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds