Wall clock time and date at job start Tue Mar 31 2020 10:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47328 * 2 1 4 4 N 1.30830 * 125.82914 * 270.04628 * 3 2 1 5 5 N 1.40080 * 108.36459 * 179.97438 * 4 3 2 6 6 C 1.46493 * 126.05750 * 180.02562 * 5 4 3 7 7 C 1.35844 * 107.87953 * 359.97438 * 5 4 3 8 8 C 1.35733 * 107.56157 * 0.02562 * 7 5 4 9 9 N 1.40838 * 126.07404 * 180.26554 * 8 7 5 10 10 C 1.34782 * 119.99748 * 359.68488 * 9 8 7 11 11 O 1.21592 * 120.00008 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99670 * 179.97438 * 10 9 8 13 13 C 1.39238 * 119.99979 * 174.84759 * 12 10 9 14 14 C 1.39685 * 119.57541 * 185.34161 * 13 12 10 15 15 C 1.38651 * 119.49094 * 180.02562 * 14 13 12 16 16 C 1.38345 * 118.67419 * 359.97438 * 15 14 13 17 17 C 1.40570 * 119.13225 * 359.97438 * 16 15 14 18 18 C 1.41339 * 119.79119 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99627 * 0.02562 * 18 17 16 20 20 C 1.40024 * 120.00257 * 179.97438 * 18 17 16 21 21 N 1.30747 * 120.00053 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47256 * 60.00414 * 22 20 18 24 24 H 1.48498 * 109.47138 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47514 * 300.00295 * 22 20 18 26 26 N 1.31906 * 119.57412 * 5.07186 * 13 12 10 27 27 H 1.08999 * 109.46371 * 300.00162 * 1 2 3 28 28 H 1.08997 * 109.46962 * 59.99288 * 1 2 3 29 29 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46920 * 240.00206 * 2 1 3 31 31 H 1.08990 * 109.47253 * 120.00514 * 2 1 3 32 32 H 1.08997 * 109.47507 * 89.97813 * 6 5 4 33 33 H 1.09003 * 109.47053 * 209.97493 * 6 5 4 34 34 H 1.08998 * 109.47499 * 329.96980 * 6 5 4 35 35 H 1.07996 * 126.21628 * 180.02562 * 7 5 4 36 36 H 0.96995 * 120.00363 * 179.68443 * 9 8 7 37 37 H 0.97000 * 120.00115 * 354.85309 * 12 10 9 38 38 H 1.07995 * 120.25719 * 359.97438 * 14 13 12 39 39 H 1.08005 * 120.65852 * 180.02562 * 15 14 13 40 40 H 1.08003 * 120.43583 * 179.97438 * 16 15 14 41 41 H 0.97002 * 119.99758 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2869 2.1432 -1.0607 5 7 2.7321 3.4030 -0.6403 6 6 3.1235 4.5141 -1.5112 7 6 2.7356 3.4123 0.7181 8 6 2.3060 2.1947 1.1370 9 7 2.1556 1.7839 2.4757 10 6 2.4560 2.6325 3.4788 11 8 2.8563 3.7529 3.2280 12 7 2.3116 2.2395 4.7598 13 6 2.7222 3.0753 5.7950 14 6 2.6727 2.6157 7.1131 15 6 3.0815 3.4496 8.1426 16 6 3.5296 4.7204 7.8292 17 6 3.5565 5.1240 6.4829 18 6 4.0111 6.4194 6.1471 19 1 4.3368 7.0956 6.9238 20 6 4.0403 6.8258 4.8075 21 7 3.6466 6.0071 3.8672 22 14 4.6418 8.5377 4.3637 23 1 6.0456 8.7027 4.8192 24 1 4.5741 8.7200 2.8915 25 1 3.7836 9.5516 5.0275 26 7 3.1579 4.2891 5.5178 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 2.2515 5.1315 -1.7266 33 1 3.8815 5.1175 -1.0119 34 1 3.5288 4.1199 -2.4432 35 1 3.0271 4.2382 1.3498 36 1 1.8360 0.8902 2.6758 37 1 1.9216 1.3743 4.9607 38 1 2.3180 1.6187 7.3288 39 1 3.0516 3.1134 9.1685 40 1 3.8544 5.3937 8.6087 41 1 3.6665 6.2888 2.9392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881148029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:05 Heat of formation + Delta-G solvation = 92.137502 kcal Electronic energy + Delta-G solvation = -26171.485298 eV Core-core repulsion = 22474.624846 eV Total energy + Delta-G solvation = -3696.860452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34876 -40.97695 -39.44709 -36.21435 -35.85852 -34.84074 -34.74114 -32.43588 -32.16507 -31.07480 -29.79628 -27.58154 -27.12550 -24.49165 -23.97746 -23.25483 -22.41855 -21.08020 -20.81222 -19.63187 -18.74342 -18.15619 -17.66628 -16.63064 -16.49653 -16.23367 -16.15261 -15.91789 -15.56893 -15.32325 -15.01699 -14.70998 -14.62164 -14.25004 -13.98755 -13.77004 -13.67889 -13.45301 -12.93988 -12.83797 -12.71115 -12.54007 -12.33604 -12.28294 -12.07819 -11.76306 -11.75764 -11.57128 -11.32250 -10.82392 -10.77194 -10.13337 -9.85066 -9.09204 -8.87981 -8.44884 -8.00318 -6.37226 0.88556 0.99398 1.30461 1.41088 1.41204 1.51020 1.55029 1.72795 1.95254 2.28692 2.65771 3.07142 3.29802 3.63498 3.84774 4.10669 4.23339 4.30007 4.39195 4.41075 4.50146 4.64221 4.66899 4.74342 4.75404 4.81857 4.90506 5.00076 5.09177 5.10107 5.23641 5.25472 5.33512 5.45106 5.69844 5.87262 5.89278 5.95255 6.04565 6.18956 6.32885 6.43735 6.73168 6.84952 7.10571 7.22020 7.95094 8.39374 8.60585 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.004825 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.514611 B = 5801.616858 C = 7922.003161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 C 0.061 3.939 4 N -0.307 5.307 5 N -0.383 5.383 6 C 0.102 3.898 7 C 0.019 3.981 8 C 0.011 3.989 9 N -0.646 5.646 10 C 0.657 3.343 11 O -0.495 6.495 12 N -0.655 5.655 13 C 0.365 3.635 14 C -0.343 4.343 15 C -0.034 4.034 16 C -0.332 4.332 17 C 0.239 3.761 18 C -0.467 4.467 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.681 5.681 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.264 1.264 26 N -0.503 5.503 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.181 0.819 36 H 0.415 0.585 37 H 0.420 0.580 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 -10.374 -8.995 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.108 4.108 4 N -0.130 5.130 5 N -0.169 5.169 6 C -0.038 4.038 7 C -0.128 4.128 8 C -0.094 4.094 9 N -0.298 5.298 10 C 0.356 3.644 11 O -0.362 6.362 12 N -0.306 5.306 13 C 0.126 3.874 14 C -0.369 4.369 15 C -0.058 4.058 16 C -0.355 4.355 17 C 0.114 3.886 18 C -0.498 4.498 19 H 0.101 0.899 20 C -0.212 4.212 21 N -0.300 5.300 22 Si 0.791 3.209 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.188 1.188 26 N -0.222 5.222 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.198 0.802 36 H 0.252 0.748 37 H 0.257 0.743 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.120 0.880 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.872 -8.896 -11.689 15.191 hybrid contribution 0.011 0.008 1.920 1.920 sum -3.861 -8.888 -9.769 13.760 Atomic orbital electron populations 1.21689 0.93422 1.03146 1.01542 1.20088 0.96665 0.86441 1.04663 1.22535 1.01730 0.98631 0.87865 1.77037 1.21412 0.91549 1.23023 1.48533 1.52450 1.11382 1.04551 1.22055 1.01861 0.85377 0.94502 1.23093 1.04478 1.00500 0.84695 1.17467 1.12856 0.94799 0.84250 1.41800 1.70059 1.16890 1.01068 1.16567 0.81243 0.85386 0.81249 1.91236 1.46334 1.17686 1.80960 1.42222 1.64715 1.20868 1.02751 1.18786 0.92920 0.89986 0.85733 1.20903 1.21990 1.02973 0.91005 1.21016 0.93642 0.92508 0.98626 1.21804 1.17571 0.99337 0.96750 1.18823 0.89080 0.93020 0.87679 1.19843 1.38211 0.97889 0.93880 0.89920 1.26938 0.95475 1.02296 0.96454 1.70543 1.25365 1.33742 1.00358 0.85474 0.79473 0.78211 0.77779 1.18814 1.19589 1.18806 1.68619 1.18044 1.01432 1.34117 0.93180 0.93689 0.89382 0.89260 0.88406 0.89903 0.88755 0.87946 0.80179 0.74772 0.74289 0.84920 0.84580 0.87960 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.90 71.98 0.71 -1.56 16 2 C -0.04 -0.73 6.34 29.85 0.19 -0.54 16 3 C 0.06 1.72 6.48 43.19 0.28 2.00 16 4 N -0.31 -9.52 12.57 -47.16 -0.59 -10.11 16 5 N -0.38 -12.00 4.04 -368.49 -1.49 -13.49 16 6 C 0.10 2.24 11.48 127.77 1.47 3.71 16 7 C 0.02 0.71 10.38 83.49 0.87 1.58 16 8 C 0.01 0.38 6.90 37.60 0.26 0.64 16 9 N -0.65 -19.90 5.48 -317.72 -1.74 -21.64 16 10 C 0.66 26.69 8.49 179.05 1.52 28.21 16 11 O -0.50 -24.90 9.25 -4.01 -0.04 -24.94 16 12 N -0.66 -24.67 5.39 -322.12 -1.74 -26.40 16 13 C 0.37 17.33 7.43 133.26 0.99 18.32 16 14 C -0.34 -14.28 9.96 22.72 0.23 -14.05 16 15 C -0.03 -1.44 10.15 22.39 0.23 -1.22 16 16 C -0.33 -16.62 9.83 22.86 0.22 -16.40 16 17 C 0.24 13.69 6.55 40.19 0.26 13.95 16 18 C -0.47 -26.41 9.14 23.47 0.21 -26.19 16 19 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 20 C 0.01 0.77 5.50 85.29 0.47 1.24 16 21 N -0.68 -37.99 8.98 21.84 0.20 -37.79 16 22 Si 0.97 40.03 29.56 68.60 2.03 42.06 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 N -0.50 -28.36 5.73 -186.37 -1.07 -29.43 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.10 1.40 7.69 -2.39 -0.02 1.38 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.18 7.80 5.84 -2.91 -0.02 7.78 16 36 H 0.42 9.04 8.24 -92.71 -0.76 8.28 16 37 H 0.42 11.23 8.71 -92.71 -0.81 10.42 16 38 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 41 H 0.27 14.01 8.29 -92.71 -0.77 13.24 16 Total: -1.00 -76.16 348.64 2.99 -73.18 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: -0.48 Total: 38.89 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 7.91 Total: 9.69 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -6.43 Total: -138.87 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -76.16 2.99 -73.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.315 kcal (2) G-P(sol) polarization free energy of solvation -76.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds