Wall clock time and date at job start Tue Mar 31 2020 10:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35318 * 126.12931 * 2 1 4 4 C 1.50699 * 126.03743 * 0.02562 * 3 2 1 5 5 N 1.46499 * 109.47354 * 80.00176 * 4 3 2 6 6 C 1.34769 * 120.00227 * 180.02562 * 5 4 3 7 7 O 1.21581 * 119.99963 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00097 * 179.72685 * 6 5 4 9 9 C 1.39244 * 119.99888 * 175.13395 * 8 6 5 10 10 C 1.39688 * 119.57356 * 185.40404 * 9 8 6 11 11 C 1.38646 * 119.49419 * 179.72522 * 10 9 8 12 12 C 1.38353 * 118.67308 * 0.52990 * 11 10 9 13 13 C 1.40577 * 119.13005 * 359.73384 * 12 11 10 14 14 C 1.41335 * 119.78649 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99966 * 359.97257 * 14 13 12 16 16 C 1.40032 * 119.99696 * 179.97438 * 14 13 12 17 17 N 1.30747 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99638 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47390 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47044 * 119.99958 * 18 16 14 21 21 H 1.48501 * 109.46915 * 239.99211 * 18 16 14 22 22 N 1.31903 * 119.58167 * 5.66504 * 9 8 6 23 23 C 1.39870 * 107.92157 * 180.28531 * 3 2 1 24 24 N 1.30837 * 108.20284 * 359.55703 * 23 3 2 25 25 N 1.34954 * 126.12806 * 180.02562 * 2 1 3 26 26 C 1.46502 * 126.03564 * 359.95793 * 25 2 1 27 27 H 1.08991 * 109.47191 * 90.00270 * 1 2 3 28 28 H 1.09006 * 109.46885 * 210.00326 * 1 2 3 29 29 H 1.09001 * 109.46863 * 329.99822 * 1 2 3 30 30 H 1.09004 * 109.46786 * 319.99974 * 4 3 2 31 31 H 1.09003 * 109.47050 * 200.00637 * 4 3 2 32 32 H 0.96998 * 119.99723 * 359.97438 * 5 4 3 33 33 H 0.96999 * 120.00020 * 355.12095 * 8 6 5 34 34 H 1.08003 * 120.25416 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.66593 * 180.23760 * 11 10 9 36 36 H 1.07996 * 120.43850 * 179.74927 * 12 11 10 37 37 H 0.97000 * 119.99390 * 179.97438 * 17 16 14 38 38 H 1.07997 * 125.89673 * 179.73585 * 23 3 2 39 39 H 1.08989 * 109.47393 * 90.00224 * 26 25 2 40 40 H 1.09000 * 109.46481 * 210.00271 * 26 25 2 41 41 H 1.09000 * 109.46847 * 329.99792 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5275 0.0005 5 7 1.4660 2.9187 1.3610 6 6 1.0191 4.1667 1.6039 7 8 0.9295 4.9682 0.6941 8 7 0.6667 4.5248 2.8546 9 6 0.3019 5.8411 3.1251 10 6 0.0481 6.2292 4.4428 11 6 -0.3095 7.5416 4.7110 12 6 -0.4153 8.4298 3.6554 13 6 -0.1525 7.9767 2.3509 14 6 -0.2559 8.8723 1.2624 15 1 -0.5365 9.9009 1.4342 16 6 0.0054 8.4258 -0.0389 17 7 0.3455 7.1805 -0.2467 18 14 -0.1320 9.6093 -1.4775 19 1 -0.5301 10.9502 -0.9792 20 1 1.1803 9.7060 -2.1659 21 1 -1.1558 9.1121 -2.4314 22 7 0.1952 6.7042 2.1334 23 6 3.6335 0.6559 -0.0066 24 7 3.6334 -0.6524 -0.0009 25 7 2.3027 -1.0900 -0.0005 26 6 1.8539 -2.4846 -0.0002 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 0.9824 2.6324 -0.6597 31 1 2.6512 3.1692 -0.3512 32 1 1.5371 2.2791 2.0868 33 1 0.6671 3.8656 3.5661 34 1 0.1338 5.5134 5.2470 35 1 -0.5062 7.8631 5.7231 36 1 -0.6959 9.4577 3.8313 37 1 0.5261 6.8712 -1.1482 38 1 4.5083 1.2891 -0.0123 39 1 1.7421 -2.8305 -1.0277 40 1 2.5902 -3.1030 0.5132 41 1 0.8958 -2.5579 0.5142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881148841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:36 Heat of formation + Delta-G solvation = 113.568981 kcal Electronic energy + Delta-G solvation = -25527.461395 eV Core-core repulsion = 21831.530282 eV Total energy + Delta-G solvation = -3695.931113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49076 -39.30398 -37.62111 -34.79566 -33.87671 -33.51068 -32.89569 -31.88271 -30.21365 -29.15605 -27.96673 -26.91759 -25.51082 -24.55475 -21.91747 -21.13213 -20.99752 -19.70121 -19.54833 -17.95989 -17.19813 -16.49434 -16.14128 -15.83923 -14.88682 -14.72755 -14.46831 -14.40482 -14.20659 -13.84917 -13.60753 -13.42320 -13.17568 -12.96903 -12.78034 -12.69220 -12.56177 -12.36398 -11.97296 -11.84805 -11.67285 -11.11164 -10.87542 -10.69576 -10.56454 -10.39887 -9.84163 -9.61657 -9.42813 -9.10196 -8.95360 -8.51138 -8.31584 -7.87676 -7.12455 -6.85655 -6.03431 -4.31663 1.65017 2.29915 2.53343 2.90872 3.19967 3.23032 3.26421 3.33302 3.58662 4.13256 4.27747 4.33809 4.45537 4.78123 4.84171 4.95249 4.96793 5.03157 5.08014 5.25072 5.29748 5.43612 5.65680 5.83829 6.04266 6.13070 6.17116 6.23710 6.50653 6.55251 6.70026 6.82052 6.88182 6.92228 7.11429 7.32153 7.46987 7.54273 7.70045 7.84075 7.88832 8.25569 8.38685 8.77045 8.88989 9.14080 9.71300 10.35341 10.57390 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.003357 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.426450 B = 8338.068720 C = 9560.046416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.102 3.898 3 C -0.252 4.252 4 C 0.226 3.774 5 N -0.756 5.756 6 C 0.663 3.337 7 O -0.464 6.464 8 N -0.674 5.674 9 C 0.388 3.612 10 C -0.359 4.359 11 C -0.036 4.036 12 C -0.308 4.308 13 C 0.271 3.729 14 C -0.426 4.426 15 H 0.082 0.918 16 C 0.056 3.944 17 N -0.647 5.647 18 Si 0.893 3.107 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.276 1.276 22 N -0.471 5.471 23 C 0.068 3.932 24 N -0.303 5.303 25 N -0.377 5.377 26 C 0.101 3.899 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.383 0.617 33 H 0.393 0.607 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.271 0.729 38 H 0.185 0.815 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 -18.045 -0.424 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.026 4.026 3 C -0.264 4.264 4 C 0.101 3.899 5 N -0.417 5.417 6 C 0.361 3.639 7 O -0.328 6.328 8 N -0.323 5.323 9 C 0.148 3.852 10 C -0.386 4.386 11 C -0.061 4.061 12 C -0.331 4.331 13 C 0.146 3.854 14 C -0.456 4.456 15 H 0.100 0.900 16 C -0.173 4.173 17 N -0.265 5.265 18 Si 0.718 3.282 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.201 1.201 22 N -0.190 5.190 23 C -0.119 4.119 24 N -0.123 5.123 25 N -0.160 5.160 26 C -0.040 4.040 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.214 0.786 33 H 0.226 0.774 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.202 0.798 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.330 -18.903 -2.429 19.200 hybrid contribution -0.555 0.624 1.054 1.344 sum 1.775 -18.279 -1.376 18.416 Atomic orbital electron populations 1.20526 0.87088 1.04137 1.03668 1.20970 0.94606 0.86992 1.00059 1.19963 0.92511 0.95407 1.18515 1.19078 0.99583 0.87952 0.83310 1.45443 1.73346 1.12857 1.10008 1.16459 0.80590 0.82515 0.84365 1.91386 1.52909 1.47552 1.40958 1.42583 1.70401 1.09651 1.09631 1.18345 0.92610 0.84442 0.89764 1.20439 1.26125 0.97680 0.94311 1.20537 0.95777 0.92850 0.96886 1.21613 1.17966 0.99171 0.94370 1.18404 0.87735 0.88519 0.90776 1.19597 1.39143 0.96520 0.90351 0.90024 1.26193 0.95474 0.95578 1.00086 1.70364 1.21680 1.12778 1.21673 0.86500 0.78424 0.81596 0.81680 1.18705 1.20115 1.20150 1.68701 1.20021 1.01753 1.28478 1.23844 0.97814 0.91855 0.98372 1.77387 0.96381 1.13028 1.25553 1.48437 1.04075 1.05906 1.57542 1.21818 1.00985 0.77954 1.03285 0.89933 0.91255 0.88934 0.91590 0.91254 0.78551 0.77371 0.89258 0.88729 0.88673 0.91707 0.79845 0.90826 0.89345 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 9.89 36.00 0.36 -0.41 16 2 C 0.10 1.08 6.93 -82.26 -0.57 0.51 16 3 C -0.25 -3.03 5.47 -105.05 -0.57 -3.60 16 4 C 0.23 3.17 5.67 -5.19 -0.03 3.14 16 5 N -0.76 -11.33 5.55 -66.42 -0.37 -11.69 16 6 C 0.66 13.61 8.52 -86.92 -0.74 12.87 16 7 O -0.46 -11.86 12.11 5.29 0.06 -11.80 16 8 N -0.67 -13.53 5.39 -15.79 -0.09 -13.61 16 9 C 0.39 9.63 7.43 -155.00 -1.15 8.48 16 10 C -0.36 -8.21 9.96 -38.89 -0.39 -8.60 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.31 -7.89 9.83 -38.66 -0.38 -8.27 16 13 C 0.27 7.74 6.55 -85.00 -0.56 7.18 16 14 C -0.43 -11.89 9.14 -37.73 -0.34 -12.23 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 16 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 17 N -0.65 -18.16 8.99 55.55 0.50 -17.66 16 18 Si 0.89 19.50 29.56 -169.99 -5.02 14.48 16 19 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 22 N -0.47 -13.44 5.74 -10.26 -0.06 -13.50 16 23 C 0.07 0.81 11.96 -17.36 -0.21 0.60 16 24 N -0.30 -3.83 12.58 30.62 0.39 -3.44 16 25 N -0.38 -3.95 4.01 -63.89 -0.26 -4.20 16 26 C 0.10 0.61 11.27 59.85 0.67 1.29 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.40 7.08 -51.93 -0.37 0.03 16 29 H 0.09 0.85 7.89 -51.93 -0.41 0.44 16 30 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.38 4.74 8.48 -40.82 -0.35 4.39 16 33 H 0.39 6.12 8.71 -40.82 -0.36 5.76 16 34 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 38 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.07 0.36 8.14 -51.94 -0.42 -0.06 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.33 7.05 -51.93 -0.37 -0.03 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -35.69 351.79 -9.15 -44.84 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.20 Total: 10.18 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -4.41 Total: 1.12 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.12 Total: -64.12 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.06 Total: -11.80 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.69 -9.15 -44.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.409 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds