Wall clock time and date at job start Tue Mar 31 2020 10:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35318 * 126.12931 * 2 1 4 4 C 1.50699 * 126.03743 * 0.02562 * 3 2 1 5 5 N 1.46499 * 109.47354 * 80.00176 * 4 3 2 6 6 C 1.34769 * 120.00227 * 180.02562 * 5 4 3 7 7 O 1.21581 * 119.99963 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00097 * 179.72685 * 6 5 4 9 9 C 1.39244 * 119.99888 * 175.13395 * 8 6 5 10 10 C 1.39688 * 119.57356 * 185.40404 * 9 8 6 11 11 C 1.38646 * 119.49419 * 179.72522 * 10 9 8 12 12 C 1.38353 * 118.67308 * 0.52990 * 11 10 9 13 13 C 1.40577 * 119.13005 * 359.73384 * 12 11 10 14 14 C 1.41335 * 119.78649 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99966 * 359.97257 * 14 13 12 16 16 C 1.40032 * 119.99696 * 179.97438 * 14 13 12 17 17 N 1.30747 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99638 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47390 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47044 * 119.99958 * 18 16 14 21 21 H 1.48501 * 109.46915 * 239.99211 * 18 16 14 22 22 N 1.31903 * 119.58167 * 5.66504 * 9 8 6 23 23 C 1.39870 * 107.92157 * 180.28531 * 3 2 1 24 24 N 1.30837 * 108.20284 * 359.55703 * 23 3 2 25 25 N 1.34954 * 126.12806 * 180.02562 * 2 1 3 26 26 C 1.46502 * 126.03564 * 359.95793 * 25 2 1 27 27 H 1.08991 * 109.47191 * 90.00270 * 1 2 3 28 28 H 1.09006 * 109.46885 * 210.00326 * 1 2 3 29 29 H 1.09001 * 109.46863 * 329.99822 * 1 2 3 30 30 H 1.09004 * 109.46786 * 319.99974 * 4 3 2 31 31 H 1.09003 * 109.47050 * 200.00637 * 4 3 2 32 32 H 0.96998 * 119.99723 * 359.97438 * 5 4 3 33 33 H 0.96999 * 120.00020 * 355.12095 * 8 6 5 34 34 H 1.08003 * 120.25416 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.66593 * 180.23760 * 11 10 9 36 36 H 1.07996 * 120.43850 * 179.74927 * 12 11 10 37 37 H 0.97000 * 119.99390 * 179.97438 * 17 16 14 38 38 H 1.07997 * 125.89673 * 179.73585 * 23 3 2 39 39 H 1.08989 * 109.47393 * 90.00224 * 26 25 2 40 40 H 1.09000 * 109.46481 * 210.00271 * 26 25 2 41 41 H 1.09000 * 109.46847 * 329.99792 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5275 0.0005 5 7 1.4660 2.9187 1.3610 6 6 1.0191 4.1667 1.6039 7 8 0.9295 4.9682 0.6941 8 7 0.6667 4.5248 2.8546 9 6 0.3019 5.8411 3.1251 10 6 0.0481 6.2292 4.4428 11 6 -0.3095 7.5416 4.7110 12 6 -0.4153 8.4298 3.6554 13 6 -0.1525 7.9767 2.3509 14 6 -0.2559 8.8723 1.2624 15 1 -0.5365 9.9009 1.4342 16 6 0.0054 8.4258 -0.0389 17 7 0.3455 7.1805 -0.2467 18 14 -0.1320 9.6093 -1.4775 19 1 -0.5301 10.9502 -0.9792 20 1 1.1803 9.7060 -2.1659 21 1 -1.1558 9.1121 -2.4314 22 7 0.1952 6.7042 2.1334 23 6 3.6335 0.6559 -0.0066 24 7 3.6334 -0.6524 -0.0009 25 7 2.3027 -1.0900 -0.0005 26 6 1.8539 -2.4846 -0.0002 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 0.9824 2.6324 -0.6597 31 1 2.6512 3.1692 -0.3512 32 1 1.5371 2.2791 2.0868 33 1 0.6671 3.8656 3.5661 34 1 0.1338 5.5134 5.2470 35 1 -0.5062 7.8631 5.7231 36 1 -0.6959 9.4577 3.8313 37 1 0.5261 6.8712 -1.1482 38 1 4.5083 1.2891 -0.0123 39 1 1.7421 -2.8305 -1.0277 40 1 2.5902 -3.1030 0.5132 41 1 0.8958 -2.5579 0.5142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881148841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:35 Heat of formation + Delta-G solvation = 89.255765 kcal Electronic energy + Delta-G solvation = -25528.515695 eV Core-core repulsion = 21831.530282 eV Total energy + Delta-G solvation = -3696.985413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.35427 -40.98610 -39.42167 -36.19547 -35.57153 -34.76042 -34.33809 -32.87469 -32.13668 -30.85629 -29.07875 -27.59801 -27.37798 -25.69960 -23.68425 -22.97964 -21.87947 -21.32611 -20.45868 -19.72072 -18.74499 -17.99911 -17.32932 -16.69608 -16.47630 -16.23030 -16.21657 -15.71062 -15.54244 -15.21548 -14.97939 -14.61109 -14.52255 -14.12268 -13.98744 -13.76702 -13.66668 -13.40340 -13.19229 -13.09156 -12.86106 -12.71755 -12.67686 -12.49013 -12.26866 -11.69798 -11.62361 -11.45148 -10.82631 -10.81685 -10.23040 -9.85587 -9.73489 -9.45100 -9.02708 -8.71764 -7.96736 -6.35722 0.81042 1.01839 1.33333 1.43095 1.49248 1.55677 1.57615 1.62004 2.17566 2.30975 2.65418 3.09914 3.55651 3.58420 3.73792 4.11133 4.13485 4.21891 4.36997 4.40292 4.44077 4.48829 4.65428 4.71261 4.76203 4.85302 4.93765 5.00476 5.01514 5.06492 5.12004 5.23000 5.33887 5.60315 5.72135 5.78917 5.91946 5.97829 6.08238 6.10804 6.38075 6.48762 6.67867 6.87726 7.13258 7.34806 8.10579 8.44471 8.64148 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.003357 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.426450 B = 8338.068720 C = 9560.046416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.112 3.888 3 C -0.271 4.271 4 C 0.236 3.764 5 N -0.730 5.730 6 C 0.658 3.342 7 O -0.516 6.516 8 N -0.662 5.662 9 C 0.367 3.633 10 C -0.347 4.347 11 C -0.034 4.034 12 C -0.332 4.332 13 C 0.236 3.764 14 C -0.466 4.466 15 H 0.084 0.916 16 C 0.010 3.990 17 N -0.682 5.682 18 Si 0.973 3.027 19 H -0.255 1.255 20 H -0.272 1.272 21 H -0.270 1.270 22 N -0.506 5.506 23 C 0.060 3.940 24 N -0.329 5.329 25 N -0.375 5.375 26 C 0.089 3.911 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.399 0.601 33 H 0.416 0.584 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.103 0.897 37 H 0.269 0.731 38 H 0.194 0.806 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 -19.886 0.604 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.018 4.018 3 C -0.283 4.283 4 C 0.111 3.889 5 N -0.390 5.390 6 C 0.356 3.644 7 O -0.384 6.384 8 N -0.313 5.313 9 C 0.127 3.873 10 C -0.373 4.373 11 C -0.058 4.058 12 C -0.355 4.355 13 C 0.111 3.889 14 C -0.497 4.497 15 H 0.102 0.898 16 C -0.216 4.216 17 N -0.301 5.301 18 Si 0.795 3.205 19 H -0.179 1.179 20 H -0.197 1.197 21 H -0.195 1.195 22 N -0.225 5.225 23 C -0.125 4.125 24 N -0.150 5.150 25 N -0.157 5.157 26 C -0.050 4.050 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.234 0.766 33 H 0.253 0.747 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.211 0.789 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.792 -20.843 -1.342 20.962 hybrid contribution -0.387 0.999 0.898 1.398 sum 1.406 -19.844 -0.444 19.899 Atomic orbital electron populations 1.20602 0.85136 1.04930 1.04519 1.21292 0.95688 0.86640 0.98197 1.19739 0.93020 0.94469 1.21034 1.18910 0.98469 0.89208 0.82265 1.45171 1.71581 1.11200 1.11089 1.16714 0.80315 0.83452 0.83898 1.91378 1.55012 1.49529 1.42479 1.42416 1.69751 1.08702 1.10393 1.18838 0.92541 0.85622 0.90312 1.20911 1.23419 0.98427 0.94524 1.21016 0.94113 0.92532 0.98179 1.21792 1.19152 1.00292 0.94298 1.18893 0.88505 0.89192 0.92316 1.19902 1.41334 0.96891 0.91542 0.89783 1.27034 0.94668 0.97384 1.02546 1.70566 1.22907 1.14653 1.21964 0.85299 0.78410 0.79217 0.77624 1.17890 1.19731 1.19537 1.68660 1.21032 1.02315 1.30529 1.24053 0.98258 0.92023 0.98186 1.77340 0.97987 1.13153 1.26563 1.48783 1.03308 1.07347 1.56265 1.22219 1.02370 0.75711 1.04719 0.89001 0.88359 0.90185 0.92690 0.92980 0.76572 0.74729 0.85151 0.84584 0.87895 0.92010 0.78923 0.89492 0.88802 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 9.89 71.24 0.70 -0.57 16 2 C 0.11 2.17 6.93 41.40 0.29 2.46 16 3 C -0.27 -6.36 5.47 -20.14 -0.11 -6.47 16 4 C 0.24 6.77 5.67 85.63 0.49 7.26 16 5 N -0.73 -21.67 5.55 -482.31 -2.68 -24.35 16 6 C 0.66 27.32 8.52 179.06 1.53 28.85 16 7 O -0.52 -27.45 12.11 -3.97 -0.05 -27.49 16 8 N -0.66 -26.07 5.39 -322.12 -1.74 -27.81 16 9 C 0.37 18.10 7.43 133.26 0.99 19.08 16 10 C -0.35 -15.04 9.96 22.72 0.23 -14.81 16 11 C -0.03 -1.51 10.15 22.39 0.23 -1.29 16 12 C -0.33 -17.12 9.83 22.87 0.22 -16.89 16 13 C 0.24 13.94 6.55 40.19 0.26 14.21 16 14 C -0.47 -27.06 9.14 23.47 0.21 -26.85 16 15 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 16 C 0.01 0.53 5.50 85.29 0.47 1.00 16 17 N -0.68 -40.05 8.99 21.84 0.20 -39.85 16 18 Si 0.97 41.51 29.56 68.60 2.03 43.53 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 N -0.51 -29.68 5.74 -186.36 -1.07 -30.75 16 23 C 0.06 1.43 11.96 85.24 1.02 2.45 16 24 N -0.33 -7.98 12.58 -57.02 -0.72 -8.70 16 25 N -0.37 -7.08 4.01 -356.04 -1.43 -8.51 16 26 C 0.09 0.82 11.27 127.77 1.44 2.26 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 0.76 7.08 -2.38 -0.02 0.75 16 29 H 0.08 1.33 7.89 -2.39 -0.02 1.32 16 30 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.40 9.31 8.48 -92.71 -0.79 8.52 16 33 H 0.42 12.02 8.71 -92.71 -0.81 11.21 16 34 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 36 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 37 H 0.27 14.89 8.29 -92.71 -0.77 14.12 16 38 H 0.19 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 0.43 7.05 -2.39 -0.02 0.41 16 Total: -1.00 -81.23 351.79 2.01 -79.23 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.51 Total: 34.01 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 7.97 Total: 10.69 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -7.43 Total: -139.97 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -81.23 2.01 -79.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.481 kcal (2) G-P(sol) polarization free energy of solvation -81.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds