Wall clock time and date at job start Tue Mar 31 2020 10:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47271 * 2 1 4 4 C 1.38843 * 120.34483 * 270.02200 * 3 2 1 5 5 C 1.38353 * 118.49840 * 179.72462 * 4 3 2 6 6 C 1.39052 * 119.09484 * 0.49768 * 5 4 3 7 7 N 1.39382 * 119.69156 * 179.77205 * 6 5 4 8 8 C 1.34782 * 119.99721 * 185.10516 * 7 6 5 9 9 O 1.21581 * 119.99727 * 354.90258 * 8 7 6 10 10 N 1.34782 * 119.99940 * 174.90199 * 8 7 6 11 11 C 1.40187 * 119.99636 * 180.02562 * 10 8 7 12 12 C 1.40399 * 125.97470 * 359.97438 * 11 10 8 13 13 C 1.35243 * 107.86403 * 179.70031 * 12 11 10 14 14 N 1.34960 * 107.86144 * 0.26381 * 13 12 11 15 15 C 1.46506 * 125.97770 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47116 * 124.99891 * 15 14 13 17 17 H 1.07999 * 119.99895 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00208 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99974 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00080 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47154 * 59.99778 * 20 18 16 22 22 H 1.48501 * 109.47005 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46959 * 299.99363 * 20 18 16 24 24 N 1.31218 * 125.96970 * 180.17046 * 11 10 8 25 25 N 1.32349 * 120.60952 * 359.49079 * 6 5 4 26 26 C 1.31940 * 121.63088 * 0.26000 * 25 6 5 27 27 H 1.08995 * 109.47322 * 300.00014 * 1 2 3 28 28 H 1.09000 * 109.47248 * 60.00097 * 1 2 3 29 29 H 1.08999 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47108 * 240.00200 * 2 1 3 31 31 H 1.08993 * 109.47334 * 120.00238 * 2 1 3 32 32 H 1.08006 * 120.75326 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.45146 * 180.26631 * 5 4 3 34 34 H 0.97002 * 120.00367 * 5.11067 * 7 6 5 35 35 H 0.96992 * 119.99863 * 0.02562 * 10 8 7 36 36 H 1.08001 * 126.06645 * 359.96451 * 12 11 10 37 37 H 1.08008 * 126.07004 * 180.28393 * 13 12 11 38 38 H 1.08991 * 109.47205 * 245.00155 * 15 14 13 39 39 H 1.09007 * 109.46591 * 5.00343 * 15 14 13 40 40 H 0.96991 * 120.00125 * 180.02562 * 19 18 16 41 41 H 1.08006 * 119.57612 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2657 2.0823 -1.1982 5 6 2.7212 3.3879 -1.1536 6 6 2.9385 3.9864 0.0825 7 7 3.4018 5.2996 0.1419 8 6 3.7126 5.8514 1.3317 9 8 3.5018 5.2377 2.3599 10 7 4.2570 7.0833 1.3816 11 6 4.5807 7.6570 2.6191 12 6 4.3922 7.0638 3.8776 13 6 4.8353 7.9314 4.8157 14 7 5.2824 9.0351 4.1805 15 6 5.8487 10.2258 4.8193 16 6 7.2107 10.5074 4.2391 17 1 7.6140 9.8641 3.4711 18 6 7.9419 11.5863 4.6888 19 7 7.4506 12.3700 5.6237 20 14 9.6299 11.9358 3.9691 21 1 9.5062 12.1702 2.5079 22 1 10.2039 13.1427 4.6166 23 1 10.5213 10.7728 4.2103 24 7 5.1095 8.8436 2.8038 25 7 2.7042 3.3224 1.2032 26 6 2.2648 2.0784 1.1915 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0917 1.5901 -2.1438 33 1 2.9090 3.9336 -2.0665 34 1 3.5006 5.8165 -0.6730 35 1 4.4248 7.5730 0.5613 36 1 3.9722 6.0863 4.0633 37 1 4.8323 7.7696 5.8836 38 1 5.1945 11.0792 4.6416 39 1 5.9391 10.0543 5.8920 40 1 7.9648 13.1292 5.9398 41 1 2.0843 1.5680 2.1260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881206619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:30 Heat of formation + Delta-G solvation = 80.639629 kcal Electronic energy + Delta-G solvation = -24422.289557 eV Core-core repulsion = 20724.930520 eV Total energy + Delta-G solvation = -3697.359037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.36500 -41.67099 -40.40006 -36.78491 -36.06762 -35.32717 -34.62734 -32.95049 -32.62355 -30.96134 -29.80367 -28.50437 -25.67955 -24.91987 -24.70419 -23.14264 -22.22173 -21.84246 -21.29230 -19.51448 -18.99859 -18.64492 -17.97639 -17.07902 -16.94711 -16.81820 -16.31517 -16.13381 -15.79467 -15.46744 -15.15567 -14.99841 -14.59500 -14.49952 -14.24197 -14.00753 -13.81909 -13.72883 -13.65912 -13.08251 -12.94574 -12.72065 -12.28467 -12.12461 -12.11193 -11.81480 -11.69522 -11.62147 -11.41222 -11.23775 -10.71638 -10.69832 -10.03185 -9.76657 -9.25569 -8.97960 -8.32224 -6.46485 0.15513 0.45089 0.95005 1.08685 1.38552 1.40596 1.49371 1.69644 2.00318 2.34728 2.35801 2.91064 2.98281 2.99369 3.59917 3.88453 3.96085 4.05791 4.12593 4.16630 4.26382 4.47943 4.59208 4.70175 4.75574 4.81665 4.88888 4.93722 4.99431 5.04487 5.12320 5.13648 5.19447 5.35054 5.46086 5.48600 5.56648 5.67344 5.82776 5.89891 5.93793 6.28113 6.51650 6.65843 7.03469 7.20614 7.23216 7.44733 8.75090 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.035201 B = 0.002133 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.244129 B =13121.956264 C =13527.243194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.162 4.162 4 C -0.046 4.046 5 C -0.191 4.191 6 C 0.343 3.657 7 N -0.650 5.650 8 C 0.701 3.299 9 O -0.543 6.543 10 N -0.632 5.632 11 C 0.285 3.715 12 C -0.293 4.293 13 C 0.058 3.942 14 N -0.344 5.344 15 C 0.272 3.728 16 C -0.548 4.548 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.920 5.920 20 Si 0.972 3.028 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.270 1.270 24 N -0.344 5.344 25 N -0.518 5.518 26 C 0.111 3.889 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.434 0.566 35 H 0.422 0.578 36 H 0.164 0.836 37 H 0.201 0.799 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.273 0.727 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.418 -23.320 -16.634 31.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.166 4.166 4 C -0.072 4.072 5 C -0.214 4.214 6 C 0.112 3.888 7 N -0.301 5.301 8 C 0.400 3.600 9 O -0.413 6.413 10 N -0.285 5.285 11 C 0.030 3.970 12 C -0.324 4.324 13 C -0.091 4.091 14 N -0.126 5.126 15 C 0.154 3.846 16 C -0.586 4.586 17 H 0.071 0.929 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.195 1.195 24 N -0.175 5.175 25 N -0.232 5.232 26 C -0.046 4.046 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.190 0.810 33 H 0.188 0.812 34 H 0.274 0.726 35 H 0.260 0.740 36 H 0.181 0.819 37 H 0.218 0.782 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.918 -22.045 -15.270 29.346 hybrid contribution 0.557 0.196 -0.949 1.118 sum -11.361 -21.849 -16.219 29.487 Atomic orbital electron populations 1.21756 0.94434 1.02427 1.01764 1.20451 0.96171 0.90311 1.04117 1.21111 1.02555 0.99250 0.93638 1.21671 0.93436 0.92767 0.99300 1.21747 1.05801 0.97317 0.96510 1.18481 0.94824 0.84719 0.90763 1.42321 1.66797 1.12295 1.08686 1.15854 0.78902 0.80474 0.84771 1.90958 1.56283 1.61435 1.32659 1.41324 1.64305 1.16537 1.06299 1.19008 0.99004 0.92177 0.86858 1.21669 1.16903 1.04244 0.89611 1.23132 0.97991 0.87005 1.00969 1.48826 1.46091 1.15313 1.02332 1.19348 0.93120 0.79511 0.92649 1.21370 1.01637 1.12939 1.22675 0.92923 1.25749 1.02471 0.94943 0.95087 1.69988 1.39865 1.16894 1.29138 0.85394 0.78497 0.77911 0.78585 1.19785 1.19789 1.19549 1.77243 1.26945 1.16903 0.96422 1.67516 1.15023 1.10254 1.30404 1.22761 0.94014 0.88814 0.99045 0.93679 0.92477 0.91076 0.89164 0.90498 0.81041 0.81200 0.72562 0.73996 0.81884 0.78234 0.95983 0.92353 0.91842 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 71.98 0.71 -0.51 16 2 C -0.07 -0.63 6.09 29.85 0.18 -0.45 16 3 C -0.16 -2.31 5.15 -19.76 -0.10 -2.42 16 4 C -0.05 -0.52 9.85 22.44 0.22 -0.30 16 5 C -0.19 -2.57 9.94 22.49 0.22 -2.35 16 6 C 0.34 7.75 7.42 132.93 0.99 8.73 16 7 N -0.65 -13.86 5.39 -322.19 -1.74 -15.60 16 8 C 0.70 21.78 8.49 179.05 1.52 23.30 16 9 O -0.54 -21.25 11.73 -3.97 -0.05 -21.29 16 10 N -0.63 -19.80 5.46 -321.23 -1.75 -21.55 16 11 C 0.29 11.78 8.11 133.31 1.08 12.86 16 12 C -0.29 -12.13 9.61 22.11 0.21 -11.91 16 13 C 0.06 2.37 11.44 83.52 0.96 3.32 16 14 N -0.34 -16.53 3.67 -351.83 -1.29 -17.82 16 15 C 0.27 14.36 6.26 85.63 0.54 14.90 16 16 C -0.55 -31.25 9.24 25.60 0.24 -31.02 16 17 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 18 C 0.02 1.00 5.46 84.65 0.46 1.46 16 19 N -0.92 -52.54 13.29 21.45 0.28 -52.25 16 20 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 N -0.34 -16.30 12.42 -54.44 -0.68 -16.97 16 25 N -0.52 -14.69 7.89 -193.05 -1.52 -16.21 16 26 C 0.11 2.37 10.85 84.63 0.92 3.29 16 27 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.48 8.09 -2.39 -0.02 0.46 16 31 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 32 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.43 5.10 8.72 -92.71 -0.81 4.29 16 35 H 0.42 10.11 8.84 -92.71 -0.82 9.29 16 36 H 0.16 6.76 5.91 -2.91 -0.02 6.74 16 37 H 0.20 6.55 8.06 -2.91 -0.02 6.53 16 38 H 0.02 1.24 8.14 -2.39 -0.02 1.23 16 39 H 0.06 3.01 8.07 -2.38 -0.02 2.99 16 40 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -78.51 357.13 2.88 -75.63 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.55 Total: 21.25 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 8.14 Total: 18.91 kcal Atomic # 7 Polarization: -133.71 SS G_CDS: -6.69 Total: -140.40 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -78.51 2.88 -75.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881206619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.267 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds