Wall clock time and date at job start Tue Mar 31 2020 10:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38075 * 126.29188 * 2 1 4 4 C 1.47390 * 126.41691 * 359.73647 * 3 2 1 5 5 O 1.21585 * 120.00024 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99885 * 179.97438 * 4 3 2 7 7 C 1.38840 * 119.99986 * 180.02562 * 6 4 3 8 8 N 1.32425 * 119.20690 * 359.73105 * 7 6 4 9 9 C 1.32276 * 120.74879 * 179.75808 * 8 7 6 10 10 C 1.50697 * 120.40455 * 180.23285 * 9 8 7 11 11 C 1.38611 * 119.18599 * 0.50871 * 9 8 7 12 12 C 1.38613 * 118.54158 * 359.75132 * 11 9 8 13 13 C 1.50705 * 120.40840 * 179.97438 * 12 11 9 14 14 N 1.32273 * 119.18651 * 359.97438 * 12 11 9 15 15 C 1.41306 * 107.16333 * 180.02562 * 3 2 1 16 16 N 1.30433 * 108.02098 * 0.02562 * 15 3 2 17 17 N 1.34253 * 126.29972 * 179.97438 * 2 1 3 18 18 C 1.46501 * 125.74644 * 359.97438 * 17 2 1 19 19 C 1.50701 * 109.47266 * 89.99812 * 18 17 2 20 20 H 1.07999 * 120.00096 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99888 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00203 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99880 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47306 * 60.00074 * 23 21 19 25 25 H 1.48500 * 109.47420 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46946 * 300.00189 * 23 21 19 27 27 H 1.09001 * 109.47399 * 89.97737 * 1 2 3 28 28 H 1.09007 * 109.46989 * 209.97521 * 1 2 3 29 29 H 1.08999 * 109.47381 * 329.97539 * 1 2 3 30 30 H 0.97006 * 119.99968 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.47434 * 270.27766 * 10 9 8 32 32 H 1.08994 * 109.47069 * 30.27776 * 10 9 8 33 33 H 1.09007 * 109.46870 * 150.27853 * 10 9 8 34 34 H 1.08002 * 120.72851 * 179.76541 * 11 9 8 35 35 H 1.08999 * 109.46861 * 270.01982 * 13 12 11 36 36 H 1.08995 * 109.46676 * 30.01532 * 13 12 11 37 37 H 1.08995 * 109.47063 * 150.02072 * 13 12 11 38 38 H 1.08004 * 125.98762 * 179.97438 * 15 3 2 39 39 H 1.09001 * 109.47024 * 209.99853 * 18 17 2 40 40 H 1.09002 * 109.47476 * 329.99528 * 18 17 2 41 41 H 0.97001 * 119.99886 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1129 0.0000 4 6 1.8862 2.5202 -0.0055 5 8 0.7001 2.7877 -0.0101 6 7 2.8003 3.5105 -0.0042 7 6 2.3877 4.8362 -0.0088 8 7 1.0920 5.1096 -0.0198 9 6 0.6650 6.3615 -0.0197 10 6 -0.8113 6.6638 -0.0269 11 6 1.5921 7.3919 -0.0186 12 6 2.9403 7.0698 -0.0124 13 6 3.9843 8.1566 -0.0116 14 7 3.2993 5.7967 -0.0072 15 6 3.6593 0.6499 -0.0006 16 7 3.6341 -0.6542 -0.0015 17 7 2.3018 -1.0820 0.0005 18 6 1.8502 -2.4757 0.0016 19 6 1.6948 -2.9546 -1.4188 20 1 1.9104 -2.2874 -2.2402 21 6 1.2773 -4.2445 -1.6696 22 7 1.0143 -5.0568 -0.6693 23 14 1.0840 -4.8379 -3.4303 24 1 2.3893 -4.7405 -4.1316 25 1 0.6264 -6.2506 -3.4291 26 1 0.0820 -3.9940 -4.1298 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3633 -0.8903 0.5135 29 1 -0.3634 0.8897 0.5142 30 1 3.7466 3.2971 -0.0002 31 1 -1.1629 6.7338 -1.0563 32 1 -1.3480 5.8663 0.4868 33 1 -0.9909 7.6101 0.4835 34 1 1.2711 8.4231 -0.0222 35 1 4.2397 8.4158 -1.0390 36 1 3.5922 9.0365 0.4984 37 1 4.8759 7.8036 0.5064 38 1 4.5453 1.2675 -0.0012 39 1 2.5850 -3.0953 0.5156 40 1 0.8918 -2.5467 0.5159 41 1 0.7202 -5.9641 -0.8458 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887845592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:37 Heat of formation + Delta-G solvation = 89.693063 kcal Electronic energy + Delta-G solvation = -25115.571584 eV Core-core repulsion = 21418.605133 eV Total energy + Delta-G solvation = -3696.966451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41172 -40.77107 -38.82535 -35.19878 -34.85269 -33.93083 -32.35828 -31.91328 -31.07648 -29.53473 -27.80040 -27.43317 -26.72261 -24.32567 -23.22945 -22.21271 -21.74027 -19.92187 -19.21488 -17.93755 -17.24100 -16.84985 -16.57446 -15.83611 -15.65825 -15.11378 -14.76731 -14.50992 -14.31614 -13.97749 -13.87694 -13.67079 -13.25008 -13.24969 -12.81785 -12.74740 -12.63596 -12.44261 -12.29414 -12.13105 -11.82469 -11.51518 -11.19690 -11.14024 -10.88374 -10.63570 -10.38303 -10.37291 -10.23804 -9.97974 -9.60768 -8.95895 -8.72064 -8.68633 -8.63900 -7.99928 -6.35050 -4.43132 0.85997 1.02639 2.12625 2.56765 2.72993 3.19467 3.23489 3.25055 3.36015 3.56970 3.89128 3.99589 4.20599 4.23222 4.46846 4.94219 4.94531 5.00478 5.06377 5.10128 5.19549 5.22366 5.33577 5.39607 5.44674 5.53964 5.63473 5.70310 5.80188 5.86067 6.05152 6.10404 6.39008 6.48869 6.55165 6.73759 6.87653 7.04597 7.09960 7.21602 7.53095 7.73170 7.75341 8.19530 8.31933 8.45956 8.61826 9.23879 10.73151 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.002686 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.851777 B =10421.908109 C =10867.355501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.172 3.828 3 C -0.333 4.333 4 C 0.599 3.401 5 O -0.482 6.482 6 N -0.639 5.639 7 C 0.555 3.445 8 N -0.505 5.505 9 C 0.204 3.796 10 C -0.105 4.105 11 C -0.274 4.274 12 C 0.205 3.795 13 C -0.104 4.104 14 N -0.560 5.560 15 C 0.059 3.941 16 N -0.292 5.292 17 N -0.312 5.312 18 C 0.251 3.749 19 C -0.542 4.542 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.421 0.579 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.178 0.822 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 24.307 2.603 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.035 3.965 3 C -0.349 4.349 4 C 0.388 3.612 5 O -0.352 6.352 6 N -0.288 5.288 7 C 0.199 3.801 8 N -0.227 5.227 9 C 0.056 3.944 10 C -0.162 4.162 11 C -0.298 4.298 12 C 0.057 3.943 13 C -0.161 4.161 14 N -0.283 5.283 15 C -0.128 4.128 16 N -0.111 5.111 17 N -0.089 5.089 18 C 0.134 3.866 19 C -0.580 4.580 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.198 1.198 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.258 0.742 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.195 0.805 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.135 21.907 2.659 22.097 hybrid contribution -0.059 0.960 -0.993 1.382 sum 1.076 22.866 1.666 22.952 Atomic orbital electron populations 1.20602 0.86594 1.03945 1.04102 1.21456 0.95005 0.86370 0.93710 1.19460 0.93424 0.91488 1.30532 1.17465 0.85004 0.83423 0.75269 1.90811 1.15601 1.83120 1.45686 1.43166 1.12001 1.01239 1.72369 1.19415 0.85148 0.86142 0.89373 1.68402 1.14786 1.21507 1.18016 1.21713 0.97565 0.87408 0.87696 1.20765 0.88916 1.02843 1.03666 1.22354 0.94209 1.01619 1.11602 1.21389 0.93502 0.90760 0.88604 1.20764 0.97074 0.94655 1.03626 1.67618 1.38402 1.00604 1.21699 1.23777 0.96246 0.92733 1.00074 1.77157 0.98583 1.12141 1.23236 1.49406 1.02465 1.08359 1.48628 1.19884 0.96488 0.70728 0.99509 1.21202 1.47680 0.98164 0.90942 0.91682 1.24918 0.94393 0.95966 0.98321 1.69902 1.44339 1.07249 1.31177 0.86375 0.78903 0.77765 0.83455 1.19886 1.20847 1.19830 0.89625 0.90668 0.88758 0.74168 0.89701 0.89592 0.90308 0.83902 0.89719 0.90102 0.89964 0.80526 0.92404 0.92449 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.56 36.00 0.34 -1.34 16 2 C 0.17 3.48 7.01 -81.59 -0.57 2.91 16 3 C -0.33 -6.11 6.13 -105.07 -0.64 -6.75 16 4 C 0.60 10.46 7.77 -12.54 -0.10 10.36 16 5 O -0.48 -9.45 13.04 5.29 0.07 -9.38 16 6 N -0.64 -9.43 5.39 -14.07 -0.08 -9.50 16 7 C 0.55 8.47 8.38 -322.35 -2.70 5.77 16 8 N -0.51 -8.00 7.81 -10.07 -0.08 -8.08 16 9 C 0.20 2.46 6.82 -82.26 -0.56 1.90 16 10 C -0.10 -0.90 10.22 36.00 0.37 -0.53 16 11 C -0.27 -2.64 9.53 -39.31 -0.37 -3.02 16 12 C 0.20 2.14 6.82 -82.26 -0.56 1.58 16 13 C -0.10 -0.65 10.22 36.01 0.37 -0.28 16 14 N -0.56 -7.42 10.39 -10.07 -0.10 -7.53 16 15 C 0.06 1.02 11.50 -16.98 -0.20 0.83 16 16 N -0.29 -6.22 12.50 30.86 0.39 -5.83 16 17 N -0.31 -6.99 3.56 -57.77 -0.21 -7.20 16 18 C 0.25 6.19 5.97 -5.19 -0.03 6.16 16 19 C -0.54 -14.52 9.39 -34.44 -0.32 -14.84 16 20 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 22 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 23 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 28 H 0.07 1.30 7.05 -51.93 -0.37 0.94 16 29 H 0.09 1.61 6.51 -51.93 -0.34 1.27 16 30 H 0.42 5.00 7.77 -40.82 -0.32 4.68 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.18 2.19 7.50 -52.48 -0.39 1.79 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -32.99 356.67 -9.12 -42.11 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.12 Total: 3.57 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -5.08 Total: 4.46 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.66 Total: -61.89 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.99 -9.12 -42.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887845592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.800 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds