Wall clock time and date at job start Tue Mar 31 2020 10:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38075 * 126.29188 * 2 1 4 4 C 1.47390 * 126.41691 * 359.73647 * 3 2 1 5 5 O 1.21585 * 120.00024 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99885 * 179.97438 * 4 3 2 7 7 C 1.38840 * 119.99986 * 180.02562 * 6 4 3 8 8 N 1.32425 * 119.20690 * 359.73105 * 7 6 4 9 9 C 1.32276 * 120.74879 * 179.75808 * 8 7 6 10 10 C 1.50697 * 120.40455 * 180.23285 * 9 8 7 11 11 C 1.38611 * 119.18599 * 0.50871 * 9 8 7 12 12 C 1.38613 * 118.54158 * 359.75132 * 11 9 8 13 13 C 1.50705 * 120.40840 * 179.97438 * 12 11 9 14 14 N 1.32273 * 119.18651 * 359.97438 * 12 11 9 15 15 C 1.41306 * 107.16333 * 180.02562 * 3 2 1 16 16 N 1.30433 * 108.02098 * 0.02562 * 15 3 2 17 17 N 1.34253 * 126.29972 * 179.97438 * 2 1 3 18 18 C 1.46501 * 125.74644 * 359.97438 * 17 2 1 19 19 C 1.50701 * 109.47266 * 89.99812 * 18 17 2 20 20 H 1.07999 * 120.00096 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99888 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00203 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99880 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47306 * 60.00074 * 23 21 19 25 25 H 1.48500 * 109.47420 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46946 * 300.00189 * 23 21 19 27 27 H 1.09001 * 109.47399 * 89.97737 * 1 2 3 28 28 H 1.09007 * 109.46989 * 209.97521 * 1 2 3 29 29 H 1.08999 * 109.47381 * 329.97539 * 1 2 3 30 30 H 0.97006 * 119.99968 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.47434 * 270.27766 * 10 9 8 32 32 H 1.08994 * 109.47069 * 30.27776 * 10 9 8 33 33 H 1.09007 * 109.46870 * 150.27853 * 10 9 8 34 34 H 1.08002 * 120.72851 * 179.76541 * 11 9 8 35 35 H 1.08999 * 109.46861 * 270.01982 * 13 12 11 36 36 H 1.08995 * 109.46676 * 30.01532 * 13 12 11 37 37 H 1.08995 * 109.47063 * 150.02072 * 13 12 11 38 38 H 1.08004 * 125.98762 * 179.97438 * 15 3 2 39 39 H 1.09001 * 109.47024 * 209.99853 * 18 17 2 40 40 H 1.09002 * 109.47476 * 329.99528 * 18 17 2 41 41 H 0.97001 * 119.99886 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1129 0.0000 4 6 1.8862 2.5202 -0.0055 5 8 0.7001 2.7877 -0.0101 6 7 2.8003 3.5105 -0.0042 7 6 2.3877 4.8362 -0.0088 8 7 1.0920 5.1096 -0.0198 9 6 0.6650 6.3615 -0.0197 10 6 -0.8113 6.6638 -0.0269 11 6 1.5921 7.3919 -0.0186 12 6 2.9403 7.0698 -0.0124 13 6 3.9843 8.1566 -0.0116 14 7 3.2993 5.7967 -0.0072 15 6 3.6593 0.6499 -0.0006 16 7 3.6341 -0.6542 -0.0015 17 7 2.3018 -1.0820 0.0005 18 6 1.8502 -2.4757 0.0016 19 6 1.6948 -2.9546 -1.4188 20 1 1.9104 -2.2874 -2.2402 21 6 1.2773 -4.2445 -1.6696 22 7 1.0143 -5.0568 -0.6693 23 14 1.0840 -4.8379 -3.4303 24 1 2.3893 -4.7405 -4.1316 25 1 0.6264 -6.2506 -3.4291 26 1 0.0820 -3.9940 -4.1298 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3633 -0.8903 0.5135 29 1 -0.3634 0.8897 0.5142 30 1 3.7466 3.2971 -0.0002 31 1 -1.1629 6.7338 -1.0563 32 1 -1.3480 5.8663 0.4868 33 1 -0.9909 7.6101 0.4835 34 1 1.2711 8.4231 -0.0222 35 1 4.2397 8.4158 -1.0390 36 1 3.5922 9.0365 0.4984 37 1 4.8759 7.8036 0.5064 38 1 4.5453 1.2675 -0.0012 39 1 2.5850 -3.0953 0.5156 40 1 0.8918 -2.5467 0.5159 41 1 0.7202 -5.9641 -0.8458 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887845592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:36 Heat of formation + Delta-G solvation = 69.976870 kcal Electronic energy + Delta-G solvation = -25116.426542 eV Core-core repulsion = 21418.605133 eV Total energy + Delta-G solvation = -3697.821409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56491 -42.10331 -40.10986 -36.35122 -35.82147 -35.70114 -33.94912 -33.13112 -32.58875 -30.29599 -29.34923 -28.38995 -28.18360 -25.77848 -24.84097 -23.26670 -22.86723 -21.28715 -20.64254 -19.12916 -18.86929 -18.33677 -17.88732 -16.92321 -16.78729 -16.42912 -16.30611 -16.07525 -15.67410 -15.27198 -14.97744 -14.61240 -14.31263 -14.26788 -14.12735 -13.94538 -13.71669 -13.59952 -13.55403 -13.27171 -13.12648 -13.00220 -12.90997 -12.70145 -12.32207 -12.13218 -11.89864 -11.73951 -11.62833 -11.26147 -10.91316 -10.76688 -10.32164 -9.98337 -9.75044 -9.46890 -8.38859 -6.55166 -0.10284 0.17826 0.65994 1.26280 1.36733 1.38288 1.38913 1.48118 1.79832 2.31654 2.34970 2.90026 2.93427 3.05445 3.38267 3.57696 3.68081 3.76375 4.00845 4.17049 4.19826 4.33053 4.47024 4.51745 4.59562 4.73388 4.76018 4.76161 4.81792 4.86251 4.92803 4.95933 5.04746 5.11962 5.20033 5.24768 5.47713 5.57402 5.63739 5.73285 5.98395 6.08007 6.20245 6.52942 6.76359 7.07821 7.15871 7.32118 8.68974 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.002686 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.851777 B =10421.908109 C =10867.355501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.156 3.844 3 C -0.330 4.330 4 C 0.604 3.396 5 O -0.508 6.508 6 N -0.630 5.630 7 C 0.528 3.472 8 N -0.547 5.547 9 C 0.180 3.820 10 C -0.101 4.101 11 C -0.255 4.255 12 C 0.191 3.809 13 C -0.099 4.099 14 N -0.568 5.568 15 C 0.081 3.919 16 N -0.331 5.331 17 N -0.335 5.335 18 C 0.267 3.733 19 C -0.557 4.557 20 H 0.052 0.948 21 C 0.025 3.975 22 N -0.916 5.916 23 Si 0.970 3.030 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.267 1.267 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.432 0.568 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.186 0.814 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.227 0.773 39 H 0.033 0.967 40 H 0.053 0.947 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 27.482 1.883 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.019 3.981 3 C -0.346 4.346 4 C 0.393 3.607 5 O -0.380 6.380 6 N -0.280 5.280 7 C 0.172 3.828 8 N -0.270 5.270 9 C 0.034 3.966 10 C -0.158 4.158 11 C -0.278 4.278 12 C 0.044 3.956 13 C -0.156 4.156 14 N -0.291 5.291 15 C -0.106 4.106 16 N -0.150 5.150 17 N -0.112 5.112 18 C 0.148 3.852 19 C -0.595 4.595 20 H 0.070 0.930 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.794 3.206 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.192 1.192 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.272 0.728 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.203 0.797 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.244 0.756 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.611 25.145 1.948 25.272 hybrid contribution -0.167 0.231 -0.727 0.780 sum 1.444 25.376 1.221 25.446 Atomic orbital electron populations 1.20581 0.85595 1.04225 1.04110 1.21915 0.95967 0.86483 0.93704 1.19644 0.93673 0.91728 1.29540 1.17257 0.84970 0.83410 0.75039 1.90793 1.16739 1.83512 1.46988 1.42833 1.12041 1.01126 1.71996 1.19520 0.85682 0.86355 0.91221 1.68327 1.15405 1.23909 1.19366 1.22353 0.99524 0.86986 0.87770 1.20853 0.86744 1.03783 1.04382 1.22800 0.93396 1.03016 1.08604 1.22237 0.95219 0.90609 0.87497 1.20899 0.95855 0.94022 1.04833 1.67680 1.38032 1.01508 1.21929 1.24538 0.97488 0.91732 0.96823 1.77114 0.98288 1.14167 1.25447 1.49142 1.03340 1.07825 1.50904 1.19413 0.95456 0.72095 0.98220 1.21359 1.48124 0.98503 0.91537 0.92979 1.25713 0.93799 0.95921 1.02231 1.69985 1.44694 1.07639 1.33046 0.85419 0.78815 0.77708 0.78668 1.19858 1.19713 1.19183 0.89678 0.90682 0.88030 0.72846 0.88866 0.91528 0.86859 0.79693 0.88348 0.87206 0.90169 0.75645 0.94848 0.92916 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 9.56 71.24 0.68 -2.54 16 2 C 0.16 6.44 7.01 42.15 0.30 6.74 16 3 C -0.33 -12.09 6.13 -20.15 -0.12 -12.21 16 4 C 0.60 21.10 7.77 86.65 0.67 21.77 16 5 O -0.51 -20.25 13.04 -3.98 -0.05 -20.30 16 6 N -0.63 -18.23 5.39 -316.70 -1.71 -19.94 16 7 C 0.53 15.81 8.38 261.33 2.19 18.00 16 8 N -0.55 -17.16 7.81 -185.79 -1.45 -18.61 16 9 C 0.18 4.05 6.82 42.58 0.29 4.34 16 10 C -0.10 -1.55 10.22 71.23 0.73 -0.82 16 11 C -0.26 -4.09 9.53 22.45 0.21 -3.88 16 12 C 0.19 3.46 6.82 42.58 0.29 3.75 16 13 C -0.10 -0.86 10.22 71.24 0.73 -0.14 16 14 N -0.57 -14.20 10.39 -185.78 -1.93 -16.13 16 15 C 0.08 2.75 11.50 85.66 0.99 3.73 16 16 N -0.33 -14.27 12.50 -56.27 -0.70 -14.97 16 17 N -0.34 -15.52 3.56 -336.67 -1.20 -16.72 16 18 C 0.27 13.75 5.97 85.63 0.51 14.26 16 19 C -0.56 -30.72 9.39 25.60 0.24 -30.48 16 20 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 21 C 0.03 1.35 5.46 84.65 0.46 1.81 16 22 N -0.92 -51.23 13.29 21.45 0.28 -50.95 16 23 Si 0.97 42.75 29.54 68.60 2.03 44.77 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.07 2.72 7.05 -2.38 -0.02 2.70 16 29 H 0.10 3.57 6.51 -2.39 -0.02 3.56 16 30 H 0.43 9.73 7.77 -92.70 -0.72 9.01 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 0.90 8.10 -2.38 -0.02 0.88 16 34 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.11 0.35 8.09 -2.39 -0.02 0.33 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.23 4.99 7.50 -2.91 -0.02 4.96 16 39 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 2.71 7.02 -2.39 -0.02 2.70 16 41 H 0.27 14.40 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -74.26 356.67 3.79 -70.47 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.36 Total: 18.04 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 8.17 Total: 24.34 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -6.71 Total: -137.32 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.26 3.79 -70.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887845592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.448 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds