Wall clock time and date at job start Tue Mar 31 2020 10:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30874 * 125.92231 * 2 1 4 4 C 1.33661 * 109.79529 * 179.97438 * 3 2 1 5 5 N 1.39824 * 125.57474 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00390 * 0.02562 * 5 4 3 7 7 O 1.21587 * 119.99964 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00194 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99946 * 359.97438 * 8 6 5 10 10 C 1.46500 * 119.99917 * 179.97438 * 8 6 5 11 11 C 1.50703 * 109.47322 * 89.99913 * 10 8 6 12 12 H 1.08004 * 119.99465 * 359.97438 * 11 10 8 13 13 C 1.37877 * 120.00406 * 180.02562 * 11 10 8 14 14 N 1.31517 * 119.99420 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00033 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47197 * 90.00037 * 15 13 11 17 17 H 1.48505 * 109.46803 * 209.99500 * 15 13 11 18 18 H 1.48491 * 109.47090 * 329.99601 * 15 13 11 19 19 N 1.31203 * 108.84280 * 359.73479 * 4 3 2 20 20 N 1.34679 * 125.92350 * 179.97438 * 2 1 3 21 21 C 1.40137 * 126.78673 * 359.97438 * 20 2 1 22 22 C 1.38848 * 120.07163 * 144.99793 * 21 20 2 23 23 C 1.38111 * 119.93523 * 179.97438 * 22 21 20 24 24 C 1.38285 * 120.06839 * 359.97438 * 23 22 21 25 25 C 1.38281 * 120.13633 * 0.02562 * 24 23 22 26 26 C 1.38122 * 120.06846 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47135 * 270.01889 * 1 2 3 28 28 H 1.08999 * 109.47470 * 30.02159 * 1 2 3 29 29 H 1.08999 * 109.47101 * 150.02761 * 1 2 3 30 30 H 0.97002 * 119.99948 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.46984 * 90.00217 * 9 8 6 32 32 H 1.09002 * 109.47290 * 210.00100 * 9 8 6 33 33 H 1.08997 * 109.47434 * 330.00284 * 9 8 6 34 34 H 1.09001 * 109.47297 * 209.99644 * 10 8 6 35 35 H 1.09000 * 109.47555 * 329.99768 * 10 8 6 36 36 H 0.97002 * 119.99634 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.03296 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.96912 * 180.02562 * 23 22 21 39 39 H 1.07994 * 119.93477 * 179.74935 * 24 23 22 40 40 H 1.07996 * 119.97103 * 179.97438 * 25 24 23 41 41 H 1.07997 * 120.03741 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0598 0.0000 4 6 3.5588 0.6886 0.0006 5 7 4.6561 1.5551 0.0002 6 6 4.4617 2.8888 -0.0002 7 8 3.3321 3.3384 0.0001 8 7 5.5195 3.7240 -0.0011 9 6 6.8805 3.1823 -0.0009 10 6 5.3081 5.1737 -0.0021 11 6 5.2358 5.6719 1.4183 12 1 5.3369 4.9779 2.2397 13 6 5.0397 7.0134 1.6694 14 7 4.9162 7.8582 0.6691 15 14 4.9495 7.6307 3.4301 16 1 6.3110 7.9968 3.8967 17 1 4.0677 8.8240 3.4916 18 1 4.3982 6.5622 4.3015 19 7 3.6210 -0.6220 0.0067 20 7 2.2971 -1.0906 0.0005 21 6 1.8806 -2.4287 0.0016 22 6 2.6134 -3.3860 -0.6872 23 6 2.2007 -4.7040 -0.6838 24 6 1.0591 -5.0708 0.0051 25 6 0.3272 -4.1197 0.6921 26 6 0.7342 -2.7998 0.6916 27 1 -0.3633 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 5.5574 1.1964 0.0003 31 1 7.2179 3.0472 -1.0286 32 1 7.5474 3.8752 0.5123 33 1 6.8891 2.2214 0.5135 34 1 6.1362 5.6613 -0.5164 35 1 4.3749 5.4045 -0.5160 36 1 4.7786 8.8021 0.8456 37 1 3.5057 -3.1004 -1.2245 38 1 2.7704 -5.4491 -1.2191 39 1 0.7361 -6.1013 0.0030 40 1 -0.5641 -4.4090 1.2289 41 1 0.1624 -2.0576 1.2287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888267471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:58 Heat of formation + Delta-G solvation = 120.594200 kcal Electronic energy + Delta-G solvation = -25216.326734 eV Core-core repulsion = 21520.700257 eV Total energy + Delta-G solvation = -3695.626477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32544 -39.69324 -39.16709 -35.35595 -34.59838 -33.48091 -32.69934 -32.25394 -31.21840 -29.55926 -28.19058 -27.60433 -25.84765 -23.77660 -23.27808 -22.77343 -21.13585 -20.98546 -19.31940 -17.92439 -17.55150 -16.80233 -16.52835 -16.27808 -16.23317 -15.09711 -14.89664 -14.64967 -14.57718 -14.15693 -13.94173 -13.77362 -13.44269 -13.25220 -13.02916 -12.81178 -12.62041 -12.17118 -12.15392 -11.92490 -11.81737 -11.48219 -11.17310 -11.00823 -10.84545 -10.54645 -10.12228 -9.95454 -9.89479 -9.59728 -9.41298 -9.18593 -9.10952 -8.39500 -8.27005 -7.62361 -6.00318 -4.04570 0.56549 0.92465 1.74845 1.98808 2.93339 2.97081 3.33456 3.34133 3.40118 3.45832 4.01387 4.07955 4.34757 4.42354 4.49177 4.54101 4.68683 4.72537 4.94648 4.98955 5.20737 5.24876 5.32864 5.33871 5.47733 5.55579 5.62802 5.73881 5.87199 5.90923 5.94449 6.07106 6.14983 6.32022 6.37686 6.64612 6.89163 7.01587 7.29762 7.51172 7.59515 7.96665 8.19203 8.26858 8.62695 8.96224 9.27751 9.60518 11.07671 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025129 B = 0.002689 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.996110 B =10409.454521 C =10935.752817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.295 3.705 3 N -0.498 5.498 4 C 0.489 3.511 5 N -0.644 5.644 6 C 0.695 3.305 7 O -0.526 6.526 8 N -0.610 5.610 9 C 0.082 3.918 10 C 0.261 3.739 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.274 1.274 19 N -0.353 5.353 20 N -0.340 5.340 21 C 0.159 3.841 22 C -0.109 4.109 23 C -0.101 4.101 24 C -0.124 4.124 25 C -0.098 4.098 26 C -0.132 4.132 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.414 0.586 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.263 0.737 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.341 -26.294 -2.974 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 N -0.227 5.227 4 C 0.119 3.881 5 N -0.302 5.302 6 C 0.395 3.605 7 O -0.395 6.395 8 N -0.347 5.347 9 C -0.063 4.063 10 C 0.142 3.858 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.199 1.199 19 N -0.188 5.188 20 N -0.127 5.127 21 C 0.067 3.933 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.143 4.143 25 C -0.117 4.117 26 C -0.152 4.152 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.252 0.748 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.577 -25.585 -3.022 26.589 hybrid contribution 0.573 0.134 1.054 1.207 sum -6.004 -25.452 -1.968 26.224 Atomic orbital electron populations 1.20567 0.83577 1.05242 1.04563 1.24711 0.96993 0.81129 0.95148 1.70795 0.99916 1.26876 1.25102 1.20063 0.87278 0.86099 0.94638 1.42177 1.05865 1.04600 1.77596 1.15843 0.86106 0.79137 0.79388 1.91027 1.20938 1.73910 1.53656 1.47491 1.03065 1.08550 1.75616 1.21629 0.85353 0.98756 1.00516 1.19282 0.98384 0.70587 0.97553 1.21459 1.49802 0.92848 0.92373 0.92476 1.24922 0.95091 0.96649 0.97425 1.69934 1.49524 1.03295 1.30660 0.86488 0.77797 0.78372 0.84709 1.20695 1.21078 1.19933 1.78269 0.95524 1.08742 1.36300 1.47324 1.03840 1.04645 1.56913 1.17508 0.96017 0.80715 0.99095 1.21068 1.00481 0.92530 0.98837 1.21093 0.96675 0.95280 0.98942 1.21265 0.95416 0.99881 0.97752 1.21012 0.99955 0.91783 0.98948 1.21140 0.96867 0.97558 0.99680 0.88739 0.87856 0.89657 0.74768 0.93499 0.90074 0.93197 0.94567 0.93528 0.92727 0.84859 0.85110 0.85420 0.84907 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 8.69 36.00 0.31 -0.47 16 2 C 0.30 4.51 7.82 -155.44 -1.21 3.29 16 3 N -0.50 -9.99 9.37 -11.00 -0.10 -10.10 16 4 C 0.49 9.47 8.81 -320.83 -2.83 6.64 16 5 N -0.64 -12.13 5.30 -17.22 -0.09 -12.22 16 6 C 0.70 16.06 8.24 -86.92 -0.72 15.34 16 7 O -0.53 -14.49 14.59 5.29 0.08 -14.42 16 8 N -0.61 -13.53 2.86 -188.75 -0.54 -14.07 16 9 C 0.08 1.31 10.20 59.84 0.61 1.92 16 10 C 0.26 6.97 5.16 -5.19 -0.03 6.94 16 11 C -0.53 -15.22 9.39 -34.44 -0.32 -15.54 16 12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 15 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 19 N -0.35 -6.03 12.51 30.04 0.38 -5.65 16 20 N -0.34 -4.98 3.74 -8.04 -0.03 -5.01 16 21 C 0.16 1.81 6.30 -83.60 -0.53 1.28 16 22 C -0.11 -1.09 9.80 -39.40 -0.39 -1.47 16 23 C -0.10 -0.73 10.04 -39.61 -0.40 -1.13 16 24 C -0.12 -0.76 10.04 -39.55 -0.40 -1.16 16 25 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 26 C -0.13 -1.12 8.32 -39.39 -0.33 -1.45 16 27 H 0.09 0.73 7.77 -51.93 -0.40 0.33 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 0.60 6.91 -51.93 -0.36 0.24 16 30 H 0.41 6.24 6.55 -40.82 -0.27 5.97 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.05 0.66 6.36 -51.93 -0.33 0.33 16 34 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 35 H 0.05 1.40 7.42 -51.93 -0.39 1.02 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.13 0.97 6.15 -52.49 -0.32 0.64 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -38.10 352.79 -10.98 -49.08 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.99 Total: 1.10 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: -6.71 Total: 14.86 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: 0.35 Total: -73.22 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.10 -10.98 -49.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888267471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.675 kcal (2) G-P(sol) polarization free energy of solvation -38.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds