Wall clock time and date at job start Tue Mar 31 2020 10:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30874 * 125.92231 * 2 1 4 4 C 1.33661 * 109.79529 * 179.97438 * 3 2 1 5 5 N 1.39824 * 125.57474 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00390 * 0.02562 * 5 4 3 7 7 O 1.21587 * 119.99964 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00194 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99946 * 359.97438 * 8 6 5 10 10 C 1.46500 * 119.99917 * 179.97438 * 8 6 5 11 11 C 1.50703 * 109.47322 * 89.99913 * 10 8 6 12 12 H 1.08004 * 119.99465 * 359.97438 * 11 10 8 13 13 C 1.37877 * 120.00406 * 180.02562 * 11 10 8 14 14 N 1.31517 * 119.99420 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00033 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47197 * 90.00037 * 15 13 11 17 17 H 1.48505 * 109.46803 * 209.99500 * 15 13 11 18 18 H 1.48491 * 109.47090 * 329.99601 * 15 13 11 19 19 N 1.31203 * 108.84280 * 359.73479 * 4 3 2 20 20 N 1.34679 * 125.92350 * 179.97438 * 2 1 3 21 21 C 1.40137 * 126.78673 * 359.97438 * 20 2 1 22 22 C 1.38848 * 120.07163 * 144.99793 * 21 20 2 23 23 C 1.38111 * 119.93523 * 179.97438 * 22 21 20 24 24 C 1.38285 * 120.06839 * 359.97438 * 23 22 21 25 25 C 1.38281 * 120.13633 * 0.02562 * 24 23 22 26 26 C 1.38122 * 120.06846 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47135 * 270.01889 * 1 2 3 28 28 H 1.08999 * 109.47470 * 30.02159 * 1 2 3 29 29 H 1.08999 * 109.47101 * 150.02761 * 1 2 3 30 30 H 0.97002 * 119.99948 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.46984 * 90.00217 * 9 8 6 32 32 H 1.09002 * 109.47290 * 210.00100 * 9 8 6 33 33 H 1.08997 * 109.47434 * 330.00284 * 9 8 6 34 34 H 1.09001 * 109.47297 * 209.99644 * 10 8 6 35 35 H 1.09000 * 109.47555 * 329.99768 * 10 8 6 36 36 H 0.97002 * 119.99634 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.03296 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.96912 * 180.02562 * 23 22 21 39 39 H 1.07994 * 119.93477 * 179.74935 * 24 23 22 40 40 H 1.07996 * 119.97103 * 179.97438 * 25 24 23 41 41 H 1.07997 * 120.03741 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0598 0.0000 4 6 3.5588 0.6886 0.0006 5 7 4.6561 1.5551 0.0002 6 6 4.4617 2.8888 -0.0002 7 8 3.3321 3.3384 0.0001 8 7 5.5195 3.7240 -0.0011 9 6 6.8805 3.1823 -0.0009 10 6 5.3081 5.1737 -0.0021 11 6 5.2358 5.6719 1.4183 12 1 5.3369 4.9779 2.2397 13 6 5.0397 7.0134 1.6694 14 7 4.9162 7.8582 0.6691 15 14 4.9495 7.6307 3.4301 16 1 6.3110 7.9968 3.8967 17 1 4.0677 8.8240 3.4916 18 1 4.3982 6.5622 4.3015 19 7 3.6210 -0.6220 0.0067 20 7 2.2971 -1.0906 0.0005 21 6 1.8806 -2.4287 0.0016 22 6 2.6134 -3.3860 -0.6872 23 6 2.2007 -4.7040 -0.6838 24 6 1.0591 -5.0708 0.0051 25 6 0.3272 -4.1197 0.6921 26 6 0.7342 -2.7998 0.6916 27 1 -0.3633 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 5.5574 1.1964 0.0003 31 1 7.2179 3.0472 -1.0286 32 1 7.5474 3.8752 0.5123 33 1 6.8891 2.2214 0.5135 34 1 6.1362 5.6613 -0.5164 35 1 4.3749 5.4045 -0.5160 36 1 4.7786 8.8021 0.8456 37 1 3.5057 -3.1004 -1.2245 38 1 2.7704 -5.4491 -1.2191 39 1 0.7361 -6.1013 0.0030 40 1 -0.5641 -4.4090 1.2289 41 1 0.1624 -2.0576 1.2287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888267471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:57 Heat of formation + Delta-G solvation = 97.781819 kcal Electronic energy + Delta-G solvation = -25217.315953 eV Core-core repulsion = 21520.700257 eV Total energy + Delta-G solvation = -3696.615696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53701 -41.20227 -40.06252 -36.91345 -36.29501 -34.89571 -34.34539 -33.57102 -31.89330 -30.48221 -29.80589 -28.95744 -27.44755 -25.47607 -24.11028 -23.88812 -22.43128 -22.18918 -20.70359 -19.17442 -18.93592 -18.67735 -17.99652 -17.49471 -17.14704 -16.75184 -16.45650 -15.92553 -15.66304 -15.28208 -15.09285 -14.76376 -14.61607 -14.52937 -14.15676 -13.99724 -13.80836 -13.54273 -13.51316 -13.17712 -13.05827 -12.84894 -12.54368 -12.53200 -12.46677 -12.20580 -11.90349 -11.71834 -11.43714 -11.15967 -10.83557 -10.62507 -10.29651 -10.00412 -9.54827 -9.24347 -8.21228 -6.35464 -0.26663 0.33881 0.66254 0.84568 1.36592 1.40123 1.49969 1.57658 1.60332 2.32661 2.42567 2.70778 2.73761 3.08209 3.19882 3.51694 3.88234 3.91861 4.10727 4.23333 4.26964 4.42900 4.47858 4.50642 4.54630 4.59494 4.62896 4.80195 4.92596 4.97198 4.97541 5.04385 5.19439 5.33744 5.36925 5.49450 5.52091 5.53580 5.65406 5.77124 5.86671 6.06043 6.08382 6.70892 6.72377 7.13481 7.30805 7.55482 8.85812 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025129 B = 0.002689 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.996110 B =10409.454521 C =10935.752817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.558 5.558 4 C 0.462 3.538 5 N -0.629 5.629 6 C 0.695 3.305 7 O -0.581 6.581 8 N -0.615 5.615 9 C 0.075 3.925 10 C 0.277 3.723 11 C -0.543 4.543 12 H 0.049 0.951 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.968 3.032 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.278 1.278 19 N -0.355 5.355 20 N -0.330 5.330 21 C 0.115 3.885 22 C -0.125 4.125 23 C -0.102 4.102 24 C -0.111 4.111 25 C -0.093 4.093 26 C -0.130 4.130 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.430 0.570 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.001 0.999 36 H 0.268 0.732 37 H 0.117 0.883 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 -29.558 -1.709 30.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.019 3.981 3 N -0.289 5.289 4 C 0.092 3.908 5 N -0.288 5.288 6 C 0.395 3.605 7 O -0.455 6.455 8 N -0.351 5.351 9 C -0.067 4.067 10 C 0.156 3.844 11 C -0.582 4.582 12 H 0.068 0.932 13 C -0.190 4.190 14 N -0.566 5.566 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.203 1.203 19 N -0.190 5.190 20 N -0.116 5.116 21 C 0.024 3.976 22 C -0.145 4.145 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.111 4.111 26 C -0.151 4.151 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.134 0.866 30 H 0.271 0.729 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.171 0.829 39 H 0.180 0.820 40 H 0.185 0.815 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.342 -28.959 -1.767 29.927 hybrid contribution 0.743 0.859 0.609 1.288 sum -6.599 -28.100 -1.159 28.888 Atomic orbital electron populations 1.20837 0.79935 1.06431 1.06399 1.25503 0.98673 0.80303 0.93580 1.70709 1.00807 1.29796 1.27630 1.20207 0.87355 0.86683 0.96605 1.41665 1.06873 1.03131 1.77169 1.15930 0.85403 0.80283 0.78862 1.90973 1.23139 1.75330 1.56029 1.47360 1.05371 1.07005 1.75394 1.21953 0.81932 0.99865 1.02920 1.18769 0.96030 0.73437 0.96173 1.21683 1.50274 0.93249 0.92981 0.93235 1.25821 0.94413 0.96788 1.01955 1.70045 1.49917 1.03743 1.32884 0.85413 0.78698 0.77546 0.79097 1.18606 1.20434 1.20278 1.78134 0.97800 1.07536 1.35568 1.47481 1.02691 1.06030 1.55443 1.17976 0.98177 0.79289 1.02190 1.21122 1.00256 0.93790 0.99336 1.21394 0.97343 0.94308 0.98962 1.21740 0.94088 1.01517 0.95623 1.21453 1.00729 0.90600 0.98307 1.21382 0.95678 0.99019 0.98983 0.86361 0.88349 0.86646 0.72858 0.90610 0.90089 0.90069 0.94604 0.98065 0.92317 0.86503 0.82856 0.82036 0.81540 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 8.69 71.24 0.62 -0.81 16 2 C 0.29 9.14 7.82 138.13 1.08 10.22 16 3 N -0.56 -23.56 9.37 -188.71 -1.77 -25.33 16 4 C 0.46 18.66 8.81 260.80 2.30 20.96 16 5 N -0.63 -24.54 5.30 -326.67 -1.73 -26.27 16 6 C 0.70 33.62 8.24 179.06 1.48 35.09 16 7 O -0.58 -34.09 14.59 -3.99 -0.06 -34.15 16 8 N -0.62 -28.16 2.86 -869.33 -2.48 -30.64 16 9 C 0.08 2.37 10.20 127.77 1.30 3.68 16 10 C 0.28 15.49 5.16 85.63 0.44 15.93 16 11 C -0.54 -32.36 9.39 25.60 0.24 -32.12 16 12 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 13 C 0.01 0.55 5.46 84.65 0.46 1.01 16 14 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 15 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 N -0.35 -12.48 12.51 -58.88 -0.74 -13.21 16 20 N -0.33 -9.77 3.74 -179.34 -0.67 -10.44 16 21 C 0.11 2.49 6.30 38.11 0.24 2.73 16 22 C -0.12 -2.39 9.80 22.39 0.22 -2.17 16 23 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16 24 C -0.11 -0.87 10.04 22.29 0.22 -0.64 16 25 C -0.09 -0.78 10.04 22.25 0.22 -0.56 16 26 C -0.13 -1.86 8.32 22.39 0.19 -1.68 16 27 H 0.12 1.62 7.77 -2.39 -0.02 1.60 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.12 1.38 6.91 -2.39 -0.02 1.37 16 30 H 0.43 13.06 6.55 -92.71 -0.61 12.45 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 33 H 0.08 2.03 6.36 -2.39 -0.02 2.01 16 34 H 0.04 1.98 8.07 -2.39 -0.02 1.96 16 35 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 36 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 40 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 41 H 0.15 1.68 6.15 -2.91 -0.02 1.66 16 Total: -1.00 -88.96 352.79 4.56 -84.40 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.46 Total: 13.36 kcal Atomic # 6 Polarization: 41.45 SS G_CDS: 9.24 Total: 50.69 kcal Atomic # 7 Polarization: -155.40 SS G_CDS: -7.11 Total: -162.51 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.06 Total: -34.15 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -88.96 4.56 -84.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888267471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.181 kcal (2) G-P(sol) polarization free energy of solvation -88.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds