Wall clock time and date at job start Tue Mar 31 2020 10:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30870 * 125.92554 * 2 1 4 4 C 1.33655 * 109.79502 * 179.97438 * 3 2 1 5 5 N 1.39832 * 125.57496 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00088 * 359.96938 * 5 4 3 7 7 O 1.21595 * 120.00025 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00062 * 180.02562 * 6 5 4 9 9 C 1.46509 * 119.99894 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.46898 * 325.00066 * 9 8 6 11 11 C 1.53000 * 109.46986 * 85.00076 * 9 8 6 12 12 C 1.50699 * 109.46731 * 205.00062 * 9 8 6 13 13 H 1.08000 * 120.00069 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99574 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00014 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99538 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47498 * 59.99905 * 16 14 12 18 18 H 1.48503 * 109.46804 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47421 * 299.99466 * 16 14 12 20 20 N 1.31200 * 108.84947 * 359.75308 * 4 3 2 21 21 N 1.34681 * 125.92070 * 179.97438 * 2 1 3 22 22 C 1.40138 * 126.78574 * 359.97438 * 21 2 1 23 23 C 1.38848 * 120.07164 * 144.99788 * 22 21 2 24 24 C 1.38112 * 119.93523 * 179.97438 * 23 22 21 25 25 C 1.38285 * 120.06839 * 0.02562 * 24 23 22 26 26 C 1.38281 * 120.13633 * 359.97438 * 25 24 23 27 27 C 1.38127 * 120.06484 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47295 * 270.02385 * 1 2 3 29 29 H 1.09003 * 109.47477 * 30.02718 * 1 2 3 30 30 H 1.09001 * 109.47130 * 150.02531 * 1 2 3 31 31 H 0.97004 * 119.99953 * 179.97438 * 5 4 3 32 32 H 0.96999 * 120.00476 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47029 * 299.99540 * 11 9 8 34 34 H 1.09003 * 109.47141 * 59.99760 * 11 9 8 35 35 H 1.08999 * 109.46982 * 179.97438 * 11 9 8 36 36 H 0.97004 * 120.00136 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.03282 * 0.02562 * 23 22 21 38 38 H 1.08000 * 119.96928 * 180.02562 * 24 23 22 39 39 H 1.07994 * 119.93477 * 179.72538 * 25 24 23 40 40 H 1.07996 * 119.97088 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.02924 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2748 1.0598 0.0000 4 6 3.5587 0.6884 0.0006 5 7 4.6562 1.5550 0.0012 6 6 4.4618 2.8886 0.0007 7 8 3.3320 3.3383 0.0002 8 7 5.5195 3.7238 0.0009 9 6 5.3082 5.1736 0.0009 10 1 4.4228 5.4116 -0.5886 11 6 5.1101 5.6600 1.4379 12 6 6.5100 5.8564 -0.5994 13 1 7.3476 5.2692 -0.9459 14 6 6.5406 7.2308 -0.7054 15 7 5.5208 7.9457 -0.2830 16 14 8.0306 8.0771 -1.4489 17 1 8.2233 7.6054 -2.8437 18 1 7.8164 9.5466 -1.4490 19 1 9.2365 7.7524 -0.6456 20 7 3.6209 -0.6221 0.0063 21 7 2.2970 -1.0907 0.0005 22 6 1.8805 -2.4287 0.0016 23 6 2.6132 -3.3861 -0.6872 24 6 2.2003 -4.7040 -0.6838 25 6 1.0582 -5.0706 0.0043 26 6 0.3263 -4.1195 0.6912 27 6 0.7341 -2.7998 0.6916 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 5.5574 1.1962 0.0020 32 1 6.4208 3.3652 0.0010 33 1 4.2408 5.1662 1.8721 34 1 5.9954 5.4219 2.0275 35 1 4.9533 6.7387 1.4380 36 1 5.5425 8.9126 -0.3572 37 1 3.5055 -3.1006 -1.2245 38 1 2.7700 -5.4492 -1.2191 39 1 0.7349 -6.1010 0.0018 40 1 -0.5650 -4.4087 1.2281 41 1 0.1622 -2.0575 1.2287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888270602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:06 Heat of formation + Delta-G solvation = 107.488406 kcal Electronic energy + Delta-G solvation = -24974.882300 eV Core-core repulsion = 21278.687513 eV Total energy + Delta-G solvation = -3696.194787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.35665 -39.65882 -39.10632 -35.48395 -34.46102 -33.49870 -32.65321 -32.17444 -31.24200 -29.63674 -28.78046 -27.88839 -25.22525 -23.63129 -23.29497 -22.21996 -21.12120 -20.48916 -19.65998 -18.43242 -17.62244 -17.15393 -16.51498 -16.32805 -15.78303 -15.11342 -14.97739 -14.66516 -14.49365 -14.18615 -13.95868 -13.80651 -13.42151 -13.27829 -13.11669 -12.82124 -12.35936 -12.18768 -11.89527 -11.81366 -11.50444 -11.14658 -11.04262 -10.89401 -10.66798 -10.30077 -10.20069 -9.98902 -9.93769 -9.43127 -9.27882 -9.17033 -9.02266 -8.53434 -8.31922 -7.85038 -6.09844 -4.18982 0.54291 0.90652 1.72135 1.95559 2.91154 2.93469 3.27857 3.32133 3.33000 3.34662 4.03526 4.04166 4.32884 4.35312 4.47176 4.62788 4.70386 4.84376 4.93382 5.02772 5.18129 5.22031 5.22644 5.30976 5.53637 5.60165 5.71645 5.89040 5.92192 6.05527 6.29115 6.35527 6.75594 6.85913 6.92203 7.01826 7.08039 7.20939 7.48770 7.63315 7.78031 7.96373 8.17463 8.27098 8.75242 8.88216 9.27609 9.49177 10.96191 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.036783 B = 0.002347 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.037979 B =11928.981792 C =12405.629881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.295 3.705 3 N -0.498 5.498 4 C 0.489 3.511 5 N -0.644 5.644 6 C 0.691 3.309 7 O -0.540 6.540 8 N -0.717 5.717 9 C 0.282 3.718 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.534 4.534 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.883 5.883 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 N -0.352 5.352 21 N -0.340 5.340 22 C 0.159 3.841 23 C -0.109 4.109 24 C -0.101 4.101 25 C -0.124 4.124 26 C -0.098 4.098 27 C -0.132 4.132 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.415 0.585 32 H 0.386 0.614 33 H 0.016 0.984 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.265 0.735 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 -25.549 1.241 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 N -0.228 5.228 4 C 0.119 3.881 5 N -0.301 5.301 6 C 0.389 3.611 7 O -0.412 6.412 8 N -0.369 5.369 9 C 0.181 3.819 10 H 0.069 0.931 11 C -0.207 4.207 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.731 3.269 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 N -0.187 5.187 21 N -0.127 5.127 22 C 0.066 3.934 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.143 4.143 26 C -0.117 4.117 27 C -0.152 4.152 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.251 0.749 32 H 0.219 0.781 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.968 -24.738 1.255 26.700 hybrid contribution 1.753 0.041 -0.342 1.786 sum -8.215 -24.697 0.913 26.043 Atomic orbital electron populations 1.20565 0.83582 1.05282 1.04521 1.24703 0.96988 0.81147 0.95185 1.70776 0.99902 1.26889 1.25206 1.20051 0.87264 0.86086 0.94710 1.42039 1.05856 1.04526 1.77644 1.16097 0.86601 0.79186 0.79167 1.91013 1.21371 1.74193 1.54582 1.45841 1.05914 1.08504 1.76676 1.18708 0.98012 0.71180 0.94020 0.93148 1.22110 0.97122 1.04073 0.97422 1.21164 1.02657 0.91822 1.41587 0.92073 1.24880 0.96490 0.97144 0.95206 1.69895 1.29921 1.06442 1.45728 0.86480 0.82478 0.78309 0.79634 1.20202 1.21142 1.20182 1.78287 0.95499 1.08776 1.36153 1.47325 1.03850 1.04665 1.56841 1.17504 0.96044 0.80700 0.99154 1.21076 1.00485 0.92534 0.98784 1.21100 0.96666 0.95290 0.98915 1.21270 0.95387 0.99896 0.97720 1.21013 0.99955 0.91785 0.98961 1.21132 0.96843 0.97555 0.99711 0.88765 0.87868 0.89636 0.74857 0.78150 0.96490 0.95498 0.89046 0.92488 0.84839 0.85089 0.85404 0.84898 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 8.69 36.00 0.31 -0.42 16 2 C 0.30 4.34 7.82 -155.44 -1.21 3.12 16 3 N -0.50 -9.63 9.37 -11.00 -0.10 -9.74 16 4 C 0.49 9.13 8.81 -320.83 -2.83 6.30 16 5 N -0.64 -11.52 5.44 -17.22 -0.09 -11.62 16 6 C 0.69 15.14 8.50 -86.92 -0.74 14.40 16 7 O -0.54 -14.09 14.68 5.28 0.08 -14.02 16 8 N -0.72 -15.45 5.07 -59.81 -0.30 -15.75 16 9 C 0.28 7.33 2.56 -69.08 -0.18 7.16 16 10 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 11 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 12 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -25.04 11.32 55.43 0.63 -24.42 16 16 Si 0.90 20.78 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 N -0.35 -5.85 12.51 30.04 0.38 -5.47 16 21 N -0.34 -4.84 3.74 -8.04 -0.03 -4.87 16 22 C 0.16 1.75 6.30 -83.61 -0.53 1.22 16 23 C -0.11 -1.07 9.80 -39.40 -0.39 -1.45 16 24 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 25 C -0.12 -0.74 10.04 -39.55 -0.40 -1.13 16 26 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 27 C -0.13 -1.07 8.32 -39.40 -0.33 -1.40 16 28 H 0.09 0.66 7.77 -51.93 -0.40 0.26 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.57 6.91 -51.93 -0.36 0.21 16 31 H 0.41 5.81 8.84 -40.82 -0.36 5.45 16 32 H 0.39 7.03 8.55 -40.82 -0.35 6.68 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 41 H 0.13 0.90 6.15 -52.48 -0.32 0.58 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -35.58 351.77 -11.30 -46.89 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.00 Total: 8.53 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: -7.13 Total: 9.41 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: 0.47 Total: -71.86 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.08 Total: -14.02 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.58 -11.30 -46.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888270602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.374 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds