Wall clock time and date at job start Tue Mar 31 2020 10:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30870 * 125.92554 * 2 1 4 4 C 1.33655 * 109.79502 * 179.97438 * 3 2 1 5 5 N 1.39832 * 125.57496 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00088 * 359.96938 * 5 4 3 7 7 O 1.21595 * 120.00025 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00062 * 180.02562 * 6 5 4 9 9 C 1.46509 * 119.99894 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.46898 * 325.00066 * 9 8 6 11 11 C 1.53000 * 109.46986 * 85.00076 * 9 8 6 12 12 C 1.50699 * 109.46731 * 205.00062 * 9 8 6 13 13 H 1.08000 * 120.00069 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99574 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00014 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99538 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47498 * 59.99905 * 16 14 12 18 18 H 1.48503 * 109.46804 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47421 * 299.99466 * 16 14 12 20 20 N 1.31200 * 108.84947 * 359.75308 * 4 3 2 21 21 N 1.34681 * 125.92070 * 179.97438 * 2 1 3 22 22 C 1.40138 * 126.78574 * 359.97438 * 21 2 1 23 23 C 1.38848 * 120.07164 * 144.99788 * 22 21 2 24 24 C 1.38112 * 119.93523 * 179.97438 * 23 22 21 25 25 C 1.38285 * 120.06839 * 0.02562 * 24 23 22 26 26 C 1.38281 * 120.13633 * 359.97438 * 25 24 23 27 27 C 1.38127 * 120.06484 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47295 * 270.02385 * 1 2 3 29 29 H 1.09003 * 109.47477 * 30.02718 * 1 2 3 30 30 H 1.09001 * 109.47130 * 150.02531 * 1 2 3 31 31 H 0.97004 * 119.99953 * 179.97438 * 5 4 3 32 32 H 0.96999 * 120.00476 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47029 * 299.99540 * 11 9 8 34 34 H 1.09003 * 109.47141 * 59.99760 * 11 9 8 35 35 H 1.08999 * 109.46982 * 179.97438 * 11 9 8 36 36 H 0.97004 * 120.00136 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.03282 * 0.02562 * 23 22 21 38 38 H 1.08000 * 119.96928 * 180.02562 * 24 23 22 39 39 H 1.07994 * 119.93477 * 179.72538 * 25 24 23 40 40 H 1.07996 * 119.97088 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.02924 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2748 1.0598 0.0000 4 6 3.5587 0.6884 0.0006 5 7 4.6562 1.5550 0.0012 6 6 4.4618 2.8886 0.0007 7 8 3.3320 3.3383 0.0002 8 7 5.5195 3.7238 0.0009 9 6 5.3082 5.1736 0.0009 10 1 4.4228 5.4116 -0.5886 11 6 5.1101 5.6600 1.4379 12 6 6.5100 5.8564 -0.5994 13 1 7.3476 5.2692 -0.9459 14 6 6.5406 7.2308 -0.7054 15 7 5.5208 7.9457 -0.2830 16 14 8.0306 8.0771 -1.4489 17 1 8.2233 7.6054 -2.8437 18 1 7.8164 9.5466 -1.4490 19 1 9.2365 7.7524 -0.6456 20 7 3.6209 -0.6221 0.0063 21 7 2.2970 -1.0907 0.0005 22 6 1.8805 -2.4287 0.0016 23 6 2.6132 -3.3861 -0.6872 24 6 2.2003 -4.7040 -0.6838 25 6 1.0582 -5.0706 0.0043 26 6 0.3263 -4.1195 0.6912 27 6 0.7341 -2.7998 0.6916 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 5.5574 1.1962 0.0020 32 1 6.4208 3.3652 0.0010 33 1 4.2408 5.1662 1.8721 34 1 5.9954 5.4219 2.0275 35 1 4.9533 6.7387 1.4380 36 1 5.5425 8.9126 -0.3572 37 1 3.5055 -3.1006 -1.2245 38 1 2.7700 -5.4492 -1.2191 39 1 0.7349 -6.1010 0.0018 40 1 -0.5650 -4.4087 1.2281 41 1 0.1622 -2.0575 1.2287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888270602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:06 Heat of formation + Delta-G solvation = 85.908006 kcal Electronic energy + Delta-G solvation = -24975.818096 eV Core-core repulsion = 21278.687513 eV Total energy + Delta-G solvation = -3697.130583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.53027 -41.09270 -40.05651 -37.13172 -36.12654 -34.74442 -34.18628 -33.57962 -31.89898 -30.86259 -30.29498 -28.94294 -27.33122 -24.82637 -24.01411 -23.48775 -22.20711 -22.12515 -21.20895 -19.89218 -18.84672 -18.49561 -17.72687 -17.49532 -17.14895 -16.80791 -16.28994 -15.92104 -15.63565 -15.28603 -15.19304 -14.90560 -14.53213 -14.41353 -14.21275 -13.98348 -13.73124 -13.54528 -13.07809 -13.00240 -12.91181 -12.74015 -12.53693 -12.43908 -12.25041 -12.14258 -11.88839 -11.50910 -11.16475 -11.10862 -10.87959 -10.58982 -10.31119 -10.00452 -9.80966 -9.27138 -8.16371 -6.33835 -0.26356 0.33806 0.66810 0.84913 1.46298 1.49007 1.56127 1.57909 1.62991 2.36820 2.42425 2.71307 2.92178 3.14085 3.37349 3.53508 3.89693 3.92304 4.16403 4.23458 4.42885 4.48589 4.53262 4.56055 4.60008 4.74750 4.93725 4.94483 4.97933 5.04177 5.09126 5.31566 5.34973 5.37713 5.49423 5.52897 5.57890 5.59143 5.74490 5.79474 6.01256 6.08217 6.11185 6.71955 6.87189 7.23678 7.34120 7.60904 8.90158 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.036783 B = 0.002347 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.037979 B =11928.981792 C =12405.629881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.294 3.706 3 N -0.556 5.556 4 C 0.462 3.538 5 N -0.629 5.629 6 C 0.696 3.304 7 O -0.586 6.586 8 N -0.708 5.708 9 C 0.291 3.709 10 H 0.001 0.999 11 C -0.134 4.134 12 C -0.547 4.547 13 H 0.075 0.925 14 C 0.014 3.986 15 N -0.916 5.916 16 Si 0.976 3.024 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.263 1.263 20 N -0.356 5.356 21 N -0.331 5.331 22 C 0.115 3.885 23 C -0.126 4.126 24 C -0.102 4.102 25 C -0.112 4.112 26 C -0.092 4.092 27 C -0.129 4.129 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.432 0.568 32 H 0.405 0.595 33 H 0.010 0.990 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.266 0.734 37 H 0.116 0.884 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.168 0.832 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 -28.636 1.433 30.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.020 3.980 3 N -0.288 5.288 4 C 0.092 3.908 5 N -0.287 5.287 6 C 0.394 3.606 7 O -0.461 6.461 8 N -0.362 5.362 9 C 0.187 3.813 10 H 0.019 0.981 11 C -0.193 4.193 12 C -0.585 4.585 13 H 0.093 0.907 14 C -0.186 4.186 15 N -0.554 5.554 16 Si 0.800 3.200 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.188 1.188 20 N -0.192 5.192 21 N -0.117 5.117 22 C 0.024 3.976 23 C -0.146 4.146 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.111 4.111 27 C -0.150 4.150 28 H 0.138 0.862 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.272 0.728 32 H 0.240 0.760 33 H 0.029 0.971 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.170 0.830 39 H 0.179 0.821 40 H 0.185 0.815 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.227 -27.943 1.449 29.791 hybrid contribution 1.695 0.711 -0.395 1.880 sum -8.532 -27.232 1.054 28.557 Atomic orbital electron populations 1.20839 0.79908 1.06414 1.06457 1.25509 0.98680 0.80301 0.93557 1.70693 1.00689 1.29700 1.27686 1.20190 0.87373 0.86637 0.96598 1.41531 1.06916 1.03141 1.77128 1.16087 0.85748 0.80236 0.78512 1.90975 1.23147 1.75507 1.56428 1.45424 1.06929 1.07097 1.76789 1.18314 0.96129 0.73454 0.93378 0.98141 1.21926 0.97425 1.02520 0.97432 1.21478 1.02960 0.92370 1.41710 0.90652 1.25814 0.99427 0.97893 0.95486 1.70050 1.31980 1.06697 1.46713 0.85340 0.78916 0.76833 0.78869 1.19688 1.21150 1.18793 1.78156 0.97794 1.07710 1.35509 1.47480 1.02727 1.06040 1.55459 1.17965 0.98174 0.79305 1.02164 1.21119 1.00267 0.93837 0.99381 1.21388 0.97376 0.94312 0.98994 1.21739 0.94064 1.01541 0.95644 1.21460 1.00715 0.90616 0.98272 1.21384 0.95612 0.99014 0.98951 0.86212 0.88313 0.86782 0.72847 0.75980 0.97137 0.93964 0.91134 0.92457 0.86638 0.82969 0.82068 0.81474 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 8.69 71.23 0.62 -0.71 16 2 C 0.29 8.76 7.82 138.13 1.08 9.84 16 3 N -0.56 -22.49 9.37 -188.71 -1.77 -24.25 16 4 C 0.46 18.00 8.81 260.80 2.30 20.29 16 5 N -0.63 -23.37 5.44 -326.66 -1.78 -25.15 16 6 C 0.70 31.75 8.50 179.06 1.52 33.28 16 7 O -0.59 -32.28 14.68 -4.01 -0.06 -32.34 16 8 N -0.71 -31.29 5.07 -461.40 -2.34 -33.63 16 9 C 0.29 15.61 2.56 44.24 0.11 15.72 16 10 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 11 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 12 C -0.55 -29.38 8.73 25.60 0.22 -29.16 16 13 H 0.08 3.75 7.74 -2.91 -0.02 3.72 16 14 C 0.01 0.76 5.30 84.66 0.45 1.21 16 15 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 16 Si 0.98 42.44 29.54 68.60 2.03 44.46 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 20 N -0.36 -12.22 12.51 -58.88 -0.74 -12.96 16 21 N -0.33 -9.51 3.74 -179.36 -0.67 -10.18 16 22 C 0.11 2.43 6.30 38.11 0.24 2.67 16 23 C -0.13 -2.39 9.80 22.39 0.22 -2.17 16 24 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16 25 C -0.11 -0.84 10.04 22.29 0.22 -0.62 16 26 C -0.09 -0.73 10.04 22.25 0.22 -0.50 16 27 C -0.13 -1.75 8.32 22.39 0.19 -1.56 16 28 H 0.12 1.44 7.77 -2.39 -0.02 1.43 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 1.26 6.91 -2.39 -0.02 1.25 16 31 H 0.43 12.37 8.84 -92.71 -0.82 11.55 16 32 H 0.40 14.70 8.55 -92.71 -0.79 13.91 16 33 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 36 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.16 0.20 8.06 -2.91 -0.02 0.18 16 40 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 41 H 0.15 1.53 6.15 -2.91 -0.02 1.51 16 Total: -1.00 -81.92 351.77 2.68 -79.24 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.52 Total: 26.81 kcal Atomic # 6 Polarization: 32.67 SS G_CDS: 8.29 Total: 40.95 kcal Atomic # 7 Polarization: -152.08 SS G_CDS: -7.05 Total: -159.13 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.06 Total: -32.34 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -81.92 2.68 -79.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888270602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.151 kcal (2) G-P(sol) polarization free energy of solvation -81.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds