Wall clock time and date at job start Tue Mar 31 2020 10:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38062 * 126.29498 * 2 1 4 4 C 1.47406 * 126.41212 * 0.02562 * 3 2 1 5 5 O 1.21612 * 120.00214 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99814 * 180.02562 * 4 3 2 7 7 C 1.39412 * 120.00165 * 180.02562 * 6 4 3 8 8 C 1.36129 * 126.21442 * 359.68530 * 7 6 4 9 9 C 1.39762 * 107.82564 * 179.90600 * 8 7 6 10 10 N 1.30854 * 108.31992 * 0.36109 * 9 8 7 11 11 N 1.35258 * 126.22246 * 179.97438 * 7 6 4 12 12 C 1.46502 * 126.04602 * 359.94377 * 11 7 6 13 13 C 1.52996 * 117.50290 * 188.62386 * 12 11 7 14 14 C 1.52991 * 60.00008 * 252.50457 * 13 12 11 15 15 C 1.41294 * 107.17049 * 179.97438 * 3 2 1 16 16 N 1.30445 * 108.02513 * 359.74209 * 15 3 2 17 17 N 1.34272 * 126.29296 * 179.97438 * 2 1 3 18 18 C 1.46491 * 125.75618 * 359.97438 * 17 2 1 19 19 C 1.50702 * 109.46957 * 89.99967 * 18 17 2 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 H 1.08993 * 109.47042 * 269.99774 * 1 2 3 28 28 H 1.09005 * 109.46897 * 30.00486 * 1 2 3 29 29 H 1.08997 * 109.46840 * 149.99582 * 1 2 3 30 30 H 0.96999 * 120.00287 * 359.97438 * 6 4 3 31 31 H 1.08002 * 126.09179 * 0.03446 * 8 7 6 32 32 H 1.07997 * 125.83646 * 180.16457 * 9 8 7 33 33 H 1.09004 * 115.55144 * 334.32654 * 12 11 7 34 34 H 1.09007 * 117.49892 * 359.97438 * 13 12 11 35 35 H 1.09000 * 117.50648 * 145.01379 * 13 12 11 36 36 H 1.09002 * 117.50136 * 252.50610 * 14 13 12 37 37 H 1.09008 * 117.51945 * 107.47336 * 14 13 12 38 38 H 1.07998 * 125.99037 * 179.97438 * 15 3 2 39 39 H 1.09004 * 109.47166 * 330.00233 * 18 17 2 40 40 H 1.08994 * 109.47507 * 209.99939 * 18 17 2 41 41 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8861 2.5202 0.0005 5 8 0.6998 2.7877 0.0006 6 7 2.8002 3.5105 -0.0001 7 6 2.3859 4.8416 0.0010 8 6 1.0982 5.2832 -0.0034 9 6 1.1250 6.6805 0.0018 10 7 2.3749 7.0679 0.0012 11 7 3.1902 5.9291 0.0010 12 6 4.6552 5.9178 0.0012 13 6 5.3720 7.2540 0.2047 14 6 5.3671 6.5908 -1.1739 15 6 3.6592 0.6498 0.0006 16 7 3.6342 -0.6543 0.0065 17 7 2.3018 -1.0822 0.0005 18 6 1.8503 -2.4758 0.0016 19 6 1.6950 -2.9547 -1.4188 20 1 1.9113 -2.2878 -2.2403 21 6 1.2826 -4.2463 -1.6697 22 7 1.0194 -5.0585 -0.6694 23 14 1.0974 -4.8421 -3.4304 24 1 2.3818 -5.4268 -3.8927 25 1 0.0322 -5.8748 -3.4940 26 1 0.7311 -3.6987 -4.3041 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 3.7464 3.2972 -0.0005 31 1 0.2133 4.6640 -0.0078 32 1 0.2618 7.3295 0.0026 33 1 5.1184 5.0279 0.4273 34 1 4.7536 8.1417 0.3381 35 1 6.3069 7.2435 0.7650 36 1 6.2988 6.1439 -1.5208 37 1 4.7453 7.0417 -1.9475 38 1 4.5451 1.2675 0.0004 39 1 0.8918 -2.5468 0.5158 40 1 2.5851 -3.0954 0.5156 41 1 0.7290 -5.9671 -0.8460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889691339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:25 Heat of formation + Delta-G solvation = 147.351778 kcal Electronic energy + Delta-G solvation = -25238.140597 eV Core-core repulsion = 21543.674416 eV Total energy + Delta-G solvation = -3694.466181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57686 -40.86086 -38.93912 -37.27553 -34.86831 -33.95738 -32.19695 -31.36767 -31.02092 -29.16729 -27.32904 -26.73364 -23.84629 -23.58250 -22.90684 -22.74957 -21.30609 -20.40868 -19.55193 -19.12993 -18.19746 -17.01107 -16.76645 -15.79675 -15.55706 -15.37269 -15.18501 -14.69297 -14.57073 -14.41921 -13.89207 -13.81165 -13.39173 -13.17006 -12.90623 -12.65136 -12.56458 -12.17123 -11.94793 -11.89907 -11.57910 -11.40271 -11.19479 -11.04053 -10.96256 -10.94906 -10.65275 -10.41402 -10.31219 -10.01999 -9.55245 -8.87432 -8.77007 -8.72644 -8.27038 -7.92337 -6.39736 -4.48227 1.57489 2.00003 2.13876 2.62509 2.94167 2.94780 3.14682 3.21466 3.24070 3.34227 3.35190 3.74221 4.11143 4.19326 4.31362 4.47194 4.76823 4.96097 4.99669 5.04815 5.10077 5.22983 5.28946 5.44710 5.55499 5.61636 5.65804 5.73269 5.80216 5.98371 6.00879 6.18262 6.41993 6.44740 6.65430 6.75941 6.81224 6.98877 7.01190 7.32384 7.47400 7.66366 7.69856 7.75698 8.19721 8.28244 8.57179 9.19335 10.68442 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023126 B = 0.002738 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.446830 B =10223.837182 C =10652.231310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.176 3.824 3 C -0.334 4.334 4 C 0.613 3.387 5 O -0.519 6.519 6 N -0.651 5.651 7 C 0.324 3.676 8 C -0.286 4.286 9 C 0.060 3.940 10 N -0.301 5.301 11 N -0.365 5.365 12 C 0.074 3.926 13 C -0.159 4.159 14 C -0.178 4.178 15 C 0.058 3.942 16 N -0.291 5.291 17 N -0.311 5.311 18 C 0.250 3.750 19 C -0.543 4.543 20 H 0.066 0.934 21 C 0.068 3.932 22 N -0.888 5.888 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.407 0.593 31 H 0.175 0.825 32 H 0.185 0.815 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.175 0.825 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 19.436 2.329 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.038 3.962 3 C -0.349 4.349 4 C 0.404 3.596 5 O -0.395 6.395 6 N -0.298 5.298 7 C 0.105 3.895 8 C -0.318 4.318 9 C -0.126 4.126 10 N -0.123 5.123 11 N -0.152 5.152 12 C -0.030 4.030 13 C -0.197 4.197 14 C -0.216 4.216 15 C -0.129 4.129 16 N -0.110 5.110 17 N -0.087 5.087 18 C 0.133 3.867 19 C -0.582 4.582 20 H 0.084 0.916 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.195 1.195 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.243 0.757 31 H 0.193 0.807 32 H 0.202 0.798 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.192 0.808 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.026 19.044 2.396 20.118 hybrid contribution -0.318 -0.587 -0.912 1.131 sum 5.709 18.456 1.484 19.376 Atomic orbital electron populations 1.20668 0.86530 1.05149 1.03546 1.21485 0.95081 0.86292 0.93372 1.19377 0.93422 0.91344 1.30799 1.17263 0.84574 0.83386 0.74337 1.90648 1.16365 1.83283 1.49161 1.42764 1.11086 1.01753 1.74190 1.17996 0.90719 0.80254 1.00575 1.21710 0.96052 0.94600 1.19412 1.23772 0.94926 0.95254 0.98655 1.77350 1.02041 1.05216 1.27651 1.47903 1.04268 1.02531 1.60475 1.21692 0.75624 0.99723 1.05952 1.23260 1.01638 0.95662 0.99150 1.23478 1.02279 1.03412 0.92461 1.23714 0.96117 0.92780 1.00305 1.77168 0.98709 1.12067 1.23056 1.49439 1.02404 1.08425 1.48448 1.19908 0.96543 0.70644 0.99584 1.21243 1.47873 0.98128 0.90912 0.91588 1.24925 0.94339 0.95964 0.98362 1.69911 1.44325 1.07159 1.31154 0.86314 0.78136 0.78694 0.83354 1.20232 1.20733 1.19532 0.90179 0.88459 0.89611 0.75716 0.80743 0.79840 0.84453 0.86979 0.87462 0.87331 0.87930 0.80771 0.92377 0.92365 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.34 36.01 0.34 -1.36 16 2 C 0.18 3.35 7.01 -81.59 -0.57 2.78 16 3 C -0.33 -5.64 6.13 -105.07 -0.64 -6.29 16 4 C 0.61 9.58 7.78 -12.53 -0.10 9.48 16 5 O -0.52 -9.08 11.96 5.27 0.06 -9.02 16 6 N -0.65 -8.21 5.41 -12.45 -0.07 -8.27 16 7 C 0.32 4.41 7.66 -153.21 -1.17 3.23 16 8 C -0.29 -4.06 9.65 -39.77 -0.38 -4.45 16 9 C 0.06 0.73 12.01 -17.40 -0.21 0.52 16 10 N -0.30 -3.94 11.98 30.60 0.37 -3.57 16 11 N -0.36 -4.45 3.95 -53.92 -0.21 -4.66 16 12 C 0.07 0.64 6.65 -67.93 -0.45 0.19 16 13 C -0.16 -1.16 10.18 -26.74 -0.27 -1.43 16 14 C -0.18 -1.30 10.46 -26.74 -0.28 -1.58 16 15 C 0.06 0.93 11.50 -16.98 -0.20 0.74 16 16 N -0.29 -5.88 12.50 30.86 0.39 -5.49 16 17 N -0.31 -6.65 3.56 -57.77 -0.21 -6.86 16 18 C 0.25 5.97 5.78 -5.20 -0.03 5.94 16 19 C -0.54 -14.16 9.39 -34.44 -0.32 -14.48 16 20 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -23.97 13.29 55.43 0.74 -23.24 16 23 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.10 1.59 6.50 -51.93 -0.34 1.25 16 29 H 0.09 1.51 7.70 -51.93 -0.40 1.11 16 30 H 0.41 3.85 7.03 -40.82 -0.29 3.56 16 31 H 0.18 2.68 5.82 -52.49 -0.31 2.37 16 32 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.14 0.85 7.67 -51.93 -0.40 0.45 16 34 H 0.11 0.98 7.83 -51.93 -0.41 0.57 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.18 1.88 7.50 -52.49 -0.39 1.48 16 39 H 0.06 1.37 7.62 -51.93 -0.40 0.98 16 40 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -31.19 355.06 -8.00 -39.20 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.01 Total: 6.27 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -4.39 Total: -5.02 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 1.00 Total: -52.09 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.06 Total: -9.02 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.19 -8.00 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889691339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.549 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds