Wall clock time and date at job start Tue Mar 31 2020 10:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38062 * 126.29498 * 2 1 4 4 C 1.47406 * 126.41212 * 0.02562 * 3 2 1 5 5 O 1.21612 * 120.00214 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99814 * 180.02562 * 4 3 2 7 7 C 1.39412 * 120.00165 * 180.02562 * 6 4 3 8 8 C 1.36129 * 126.21442 * 359.68530 * 7 6 4 9 9 C 1.39762 * 107.82564 * 179.90600 * 8 7 6 10 10 N 1.30854 * 108.31992 * 0.36109 * 9 8 7 11 11 N 1.35258 * 126.22246 * 179.97438 * 7 6 4 12 12 C 1.46502 * 126.04602 * 359.94377 * 11 7 6 13 13 C 1.52996 * 117.50290 * 188.62386 * 12 11 7 14 14 C 1.52991 * 60.00008 * 252.50457 * 13 12 11 15 15 C 1.41294 * 107.17049 * 179.97438 * 3 2 1 16 16 N 1.30445 * 108.02513 * 359.74209 * 15 3 2 17 17 N 1.34272 * 126.29296 * 179.97438 * 2 1 3 18 18 C 1.46491 * 125.75618 * 359.97438 * 17 2 1 19 19 C 1.50702 * 109.46957 * 89.99967 * 18 17 2 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 H 1.08993 * 109.47042 * 269.99774 * 1 2 3 28 28 H 1.09005 * 109.46897 * 30.00486 * 1 2 3 29 29 H 1.08997 * 109.46840 * 149.99582 * 1 2 3 30 30 H 0.96999 * 120.00287 * 359.97438 * 6 4 3 31 31 H 1.08002 * 126.09179 * 0.03446 * 8 7 6 32 32 H 1.07997 * 125.83646 * 180.16457 * 9 8 7 33 33 H 1.09004 * 115.55144 * 334.32654 * 12 11 7 34 34 H 1.09007 * 117.49892 * 359.97438 * 13 12 11 35 35 H 1.09000 * 117.50648 * 145.01379 * 13 12 11 36 36 H 1.09002 * 117.50136 * 252.50610 * 14 13 12 37 37 H 1.09008 * 117.51945 * 107.47336 * 14 13 12 38 38 H 1.07998 * 125.99037 * 179.97438 * 15 3 2 39 39 H 1.09004 * 109.47166 * 330.00233 * 18 17 2 40 40 H 1.08994 * 109.47507 * 209.99939 * 18 17 2 41 41 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8861 2.5202 0.0005 5 8 0.6998 2.7877 0.0006 6 7 2.8002 3.5105 -0.0001 7 6 2.3859 4.8416 0.0010 8 6 1.0982 5.2832 -0.0034 9 6 1.1250 6.6805 0.0018 10 7 2.3749 7.0679 0.0012 11 7 3.1902 5.9291 0.0010 12 6 4.6552 5.9178 0.0012 13 6 5.3720 7.2540 0.2047 14 6 5.3671 6.5908 -1.1739 15 6 3.6592 0.6498 0.0006 16 7 3.6342 -0.6543 0.0065 17 7 2.3018 -1.0822 0.0005 18 6 1.8503 -2.4758 0.0016 19 6 1.6950 -2.9547 -1.4188 20 1 1.9113 -2.2878 -2.2403 21 6 1.2826 -4.2463 -1.6697 22 7 1.0194 -5.0585 -0.6694 23 14 1.0974 -4.8421 -3.4304 24 1 2.3818 -5.4268 -3.8927 25 1 0.0322 -5.8748 -3.4940 26 1 0.7311 -3.6987 -4.3041 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 3.7464 3.2972 -0.0005 31 1 0.2133 4.6640 -0.0078 32 1 0.2618 7.3295 0.0026 33 1 5.1184 5.0279 0.4273 34 1 4.7536 8.1417 0.3381 35 1 6.3069 7.2435 0.7650 36 1 6.2988 6.1439 -1.5208 37 1 4.7453 7.0417 -1.9475 38 1 4.5451 1.2675 0.0004 39 1 0.8918 -2.5468 0.5158 40 1 2.5851 -3.0954 0.5156 41 1 0.7290 -5.9671 -0.8460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889691339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:24 Heat of formation + Delta-G solvation = 128.714782 kcal Electronic energy + Delta-G solvation = -25238.948758 eV Core-core repulsion = 21543.674416 eV Total energy + Delta-G solvation = -3695.274342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.66206 -42.17991 -40.15190 -37.92324 -36.06225 -35.75161 -33.84619 -32.84159 -31.95110 -30.35356 -28.96845 -28.14708 -25.48895 -24.49117 -24.13119 -23.39025 -22.48069 -21.47897 -20.75771 -20.40909 -19.17961 -18.86165 -18.17764 -16.86552 -16.78607 -16.52330 -16.33145 -16.09738 -15.88551 -15.64676 -15.16013 -14.95686 -14.68205 -14.30976 -14.10662 -13.96599 -13.71312 -13.65182 -13.60216 -13.11292 -12.96905 -12.72073 -12.49009 -12.31495 -12.12867 -12.05157 -11.86067 -11.82752 -11.69194 -11.47596 -10.84464 -10.76323 -10.30164 -9.77217 -9.62129 -9.05583 -8.38299 -6.54479 0.39014 0.91422 1.04562 1.31861 1.37744 1.39455 1.49207 1.64800 1.91143 2.14337 2.32665 2.46368 2.76096 2.94408 3.43352 3.58763 3.69903 3.75126 3.91228 3.95605 4.16196 4.19789 4.30922 4.47439 4.59527 4.67606 4.71457 4.75787 4.79713 4.88724 4.95146 5.02541 5.11045 5.14476 5.18173 5.21456 5.48899 5.60518 5.74297 5.79087 5.99622 6.00323 6.31722 6.54433 6.75993 6.80545 7.07793 7.16948 8.69584 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023126 B = 0.002738 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.446830 B =10223.837182 C =10652.231310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.158 3.842 3 C -0.329 4.329 4 C 0.617 3.383 5 O -0.540 6.540 6 N -0.633 5.633 7 C 0.314 3.686 8 C -0.309 4.309 9 C 0.059 3.941 10 N -0.315 5.315 11 N -0.361 5.361 12 C 0.047 3.953 13 C -0.152 4.152 14 C -0.170 4.170 15 C 0.082 3.918 16 N -0.332 5.332 17 N -0.336 5.336 18 C 0.267 3.733 19 C -0.556 4.556 20 H 0.053 0.947 21 C 0.025 3.975 22 N -0.916 5.916 23 Si 0.970 3.030 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.269 1.269 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.424 0.576 31 H 0.160 0.840 32 H 0.213 0.787 33 H 0.166 0.834 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.083 0.917 38 H 0.230 0.770 39 H 0.052 0.948 40 H 0.033 0.967 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 21.014 1.816 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.021 3.979 3 C -0.344 4.344 4 C 0.407 3.593 5 O -0.417 6.417 6 N -0.280 5.280 7 C 0.093 3.907 8 C -0.341 4.341 9 C -0.126 4.126 10 N -0.137 5.137 11 N -0.147 5.147 12 C -0.055 4.055 13 C -0.189 4.189 14 C -0.208 4.208 15 C -0.105 4.105 16 N -0.151 5.151 17 N -0.113 5.113 18 C 0.148 3.852 19 C -0.594 4.594 20 H 0.071 0.929 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.793 3.207 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.194 1.194 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.090 0.910 30 H 0.263 0.737 31 H 0.177 0.823 32 H 0.229 0.771 33 H 0.183 0.817 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.101 0.899 38 H 0.246 0.754 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.627 20.661 1.888 22.104 hybrid contribution -0.752 -0.896 -0.718 1.373 sum 6.875 19.765 1.170 20.959 Atomic orbital electron populations 1.20652 0.85645 1.04566 1.04369 1.21952 0.96013 0.86496 0.93421 1.19531 0.93637 0.91510 1.29761 1.17037 0.84592 0.83314 0.74329 1.90657 1.17434 1.83522 1.50042 1.42394 1.11507 1.00968 1.73175 1.18000 0.91038 0.80688 1.00967 1.21739 0.96145 0.95520 1.20673 1.24199 0.95639 0.94917 0.97826 1.77318 1.02473 1.05997 1.27925 1.48154 1.05532 1.01627 1.59411 1.22295 0.73832 1.01706 1.07623 1.23320 1.02080 0.94137 0.99413 1.23511 1.02631 1.02862 0.91805 1.24554 0.97461 0.91710 0.96775 1.77128 0.98302 1.14298 1.25381 1.49139 1.03384 1.07812 1.50925 1.19396 0.95440 0.72197 0.98143 1.21404 1.48051 0.98368 0.91605 0.92869 1.25703 0.93841 0.95998 1.02111 1.69991 1.44861 1.07557 1.32982 0.85373 0.78297 0.78236 0.78744 1.19867 1.19737 1.19372 0.88690 0.87988 0.90996 0.73730 0.82277 0.77096 0.81680 0.88807 0.84745 0.84687 0.89887 0.75375 0.92976 0.94875 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 9.34 71.24 0.67 -2.55 16 2 C 0.16 6.02 7.01 42.14 0.30 6.31 16 3 C -0.33 -10.65 6.13 -20.15 -0.12 -10.77 16 4 C 0.62 18.32 7.78 86.66 0.67 18.99 16 5 O -0.54 -18.56 11.96 -4.07 -0.05 -18.60 16 6 N -0.63 -14.40 5.41 -311.55 -1.68 -16.09 16 7 C 0.31 8.00 7.66 131.34 1.01 9.01 16 8 C -0.31 -8.56 9.65 22.15 0.21 -8.35 16 9 C 0.06 1.39 12.01 85.21 1.02 2.42 16 10 N -0.31 -7.83 11.98 -57.09 -0.68 -8.51 16 11 N -0.36 -8.08 3.95 -324.50 -1.28 -9.36 16 12 C 0.05 0.68 6.65 44.99 0.30 0.98 16 13 C -0.15 -1.78 10.18 30.59 0.31 -1.47 16 14 C -0.17 -2.01 10.46 30.59 0.32 -1.69 16 15 C 0.08 2.43 11.50 85.65 0.99 3.42 16 16 N -0.33 -13.24 12.50 -56.27 -0.70 -13.94 16 17 N -0.34 -14.63 3.56 -336.69 -1.20 -15.83 16 18 C 0.27 13.22 5.78 85.64 0.50 13.72 16 19 C -0.56 -29.68 9.39 25.60 0.24 -29.44 16 20 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 21 C 0.03 1.32 5.46 84.66 0.46 1.78 16 22 N -0.92 -50.17 13.29 21.45 0.28 -49.89 16 23 Si 0.97 41.72 29.54 68.60 2.03 43.75 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.10 3.35 6.50 -2.38 -0.02 3.34 16 29 H 0.07 2.62 7.70 -2.39 -0.02 2.60 16 30 H 0.42 6.43 7.03 -92.71 -0.65 5.78 16 31 H 0.16 4.91 5.82 -2.91 -0.02 4.89 16 32 H 0.21 3.39 8.06 -2.91 -0.02 3.36 16 33 H 0.17 1.34 7.67 -2.39 -0.02 1.33 16 34 H 0.09 1.48 7.83 -2.38 -0.02 1.47 16 35 H 0.13 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.23 3.84 7.50 -2.91 -0.02 3.81 16 39 H 0.05 2.59 7.62 -2.38 -0.02 2.57 16 40 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.27 14.07 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -69.26 355.06 4.01 -65.26 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.43 Total: 20.86 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 6.87 Total: 2.36 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -5.27 Total: -113.62 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.05 Total: -18.60 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -69.26 4.01 -65.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889691339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.970 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds