Wall clock time and date at job start Tue Mar 31 2020 10:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38540 * 120.77212 * 2 1 4 4 C 1.38522 * 119.13690 * 180.27661 * 3 2 1 5 5 F 1.35100 * 119.65490 * 179.70407 * 4 3 2 6 6 N 1.32062 * 120.70050 * 359.72612 * 4 3 2 7 7 C 1.31907 * 121.68844 * 0.02562 * 6 4 3 8 8 C 1.38151 * 120.79510 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.38923 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47137 * 253.83263 * 9 8 7 11 11 C 1.46900 * 111.00235 * 191.72823 * 10 9 8 12 12 C 1.50702 * 109.47280 * 69.16583 * 11 10 9 13 13 H 1.08006 * 119.99955 * 5.09903 * 12 11 10 14 14 C 1.37873 * 120.00364 * 185.09531 * 12 11 10 15 15 N 1.31522 * 119.99468 * 354.58218 * 14 12 11 16 16 Si 1.86792 * 120.00483 * 174.57976 * 14 12 11 17 17 H 1.48504 * 109.46882 * 64.99959 * 16 14 12 18 18 H 1.48497 * 109.47545 * 185.00364 * 16 14 12 19 19 H 1.48504 * 109.47106 * 305.00429 * 16 14 12 20 20 C 1.46899 * 111.00378 * 67.76980 * 10 9 8 21 21 C 1.50694 * 109.47314 * 190.00219 * 20 10 9 22 22 C 1.38232 * 119.61659 * 95.00157 * 21 20 10 23 23 C 1.38627 * 119.15948 * 180.02562 * 22 21 20 24 24 C 1.38670 * 118.42387 * 0.02562 * 23 22 21 25 25 C 1.38185 * 119.16083 * 0.26886 * 24 23 22 26 26 N 1.31850 * 119.61956 * 275.02038 * 21 20 10 27 27 H 1.09002 * 109.46886 * 270.58326 * 1 2 3 28 28 H 1.08998 * 109.47248 * 30.57880 * 1 2 3 29 29 H 1.08996 * 109.47272 * 150.58386 * 1 2 3 30 30 H 1.08003 * 120.43697 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.60221 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47651 * 133.83194 * 9 8 7 33 33 H 1.09003 * 109.47363 * 13.82374 * 9 8 7 34 34 H 1.08999 * 109.47334 * 189.17066 * 11 10 9 35 35 H 1.08998 * 109.46968 * 309.17023 * 11 10 9 36 36 H 0.96998 * 119.99508 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.46815 * 70.00199 * 20 10 9 38 38 H 1.09007 * 109.46928 * 310.00582 * 20 10 9 39 39 H 1.07998 * 120.41746 * 0.04535 * 22 21 20 40 40 H 1.07998 * 120.78863 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.42222 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.61979 * 179.70187 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1903 0.0000 4 6 3.6005 1.1508 -0.0058 5 9 4.3021 2.3053 -0.0120 6 7 4.2421 -0.0035 -0.0059 7 6 3.5976 -1.1544 -0.0010 8 6 2.2166 -1.1918 0.0050 9 6 1.4897 -2.5118 0.0111 10 7 0.9100 -2.7578 -1.3161 11 6 -0.0316 -3.8847 -1.2787 12 6 -1.2562 -3.4903 -0.4940 13 1 -1.3652 -2.4770 -0.1362 14 6 -2.2376 -4.4228 -0.2329 15 7 -2.1575 -5.6261 -0.7575 16 14 -3.6809 -3.9772 0.8660 17 1 -4.4902 -2.9162 0.2142 18 1 -4.5251 -5.1788 1.0861 19 1 -3.1748 -3.4819 2.1714 20 6 1.9618 -2.9836 -2.3164 21 6 1.3520 -2.9872 -3.6945 22 6 1.3466 -1.8245 -4.4421 23 6 0.7827 -1.8384 -5.7084 24 6 0.2424 -3.0264 -6.1774 25 6 0.2788 -4.1475 -5.3704 26 7 0.8296 -4.0992 -4.1730 27 1 -0.3633 0.0105 1.0276 28 1 -0.3634 0.8847 -0.5228 29 1 -0.3633 -0.8951 -0.5047 30 1 1.6957 2.1369 -0.0004 31 1 4.1563 -2.0786 -0.0017 32 1 0.6942 -2.4851 0.7558 33 1 2.1896 -3.3109 0.2556 34 1 -0.3213 -4.1500 -2.2954 35 1 0.4453 -4.7409 -0.8017 36 1 -2.8478 -6.2823 -0.5735 37 1 2.4414 -3.9443 -2.1288 38 1 2.7038 -2.1878 -2.2494 39 1 1.7765 -0.9170 -4.0448 40 1 0.7645 -0.9453 -6.3153 41 1 -0.2047 -3.0738 -7.1593 42 1 -0.1442 -5.0753 -5.7263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891938145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:32 Heat of formation + Delta-G solvation = 36.697830 kcal Electronic energy + Delta-G solvation = -26154.693209 eV Core-core repulsion = 22435.508751 eV Total energy + Delta-G solvation = -3719.184458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.91388 -40.29529 -39.77455 -36.78023 -33.89419 -32.72899 -32.22923 -31.74765 -30.67094 -28.05696 -27.30161 -26.38594 -24.27073 -23.17820 -22.79725 -21.95513 -21.47396 -19.98523 -17.41938 -17.36890 -16.55054 -16.41011 -15.98680 -15.85202 -15.53244 -15.32096 -14.69037 -14.49031 -14.25712 -13.97915 -13.70994 -13.39803 -13.16175 -12.93312 -12.81504 -12.49475 -12.38528 -12.23980 -11.97666 -11.83889 -11.50441 -11.36852 -11.12571 -11.04760 -10.71273 -10.55983 -9.94885 -9.56606 -9.45896 -9.41168 -9.32355 -8.95285 -8.76343 -8.59192 -8.37423 -7.40451 -6.03399 -4.04952 1.01060 1.24660 1.46065 1.63199 3.29022 3.34868 3.35534 3.64793 3.68196 4.10092 4.40150 4.57552 4.67796 4.84464 4.93997 5.00693 5.01791 5.12064 5.21049 5.31474 5.35087 5.45183 5.54732 5.67315 5.74514 5.80953 5.83243 5.92935 5.96186 6.00891 6.08721 6.13246 6.39039 6.44559 6.47721 6.50558 6.68512 6.84062 7.02896 7.25191 7.37012 7.72361 7.77325 8.07317 8.12143 8.44374 8.46711 9.01712 9.58047 11.06549 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.005552 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.546348 B = 5042.040985 C = 7203.160692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.017 3.983 3 C -0.201 4.201 4 C 0.293 3.707 5 F -0.121 7.121 6 N -0.522 5.522 7 C 0.133 3.867 8 C -0.130 4.130 9 C 0.103 3.897 10 N -0.523 5.523 11 C 0.186 3.814 12 C -0.514 4.514 13 H 0.064 0.936 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.099 3.901 21 C 0.154 3.846 22 C -0.158 4.158 23 C -0.081 4.081 24 C -0.185 4.185 25 C 0.103 3.897 26 N -0.462 5.462 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.142 0.858 31 H 0.162 0.838 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.056 0.944 35 H -0.006 1.006 36 H 0.261 0.739 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.344 9.308 -4.468 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 C -0.223 4.223 4 C 0.140 3.860 5 F -0.101 7.101 6 N -0.237 5.237 7 C -0.024 4.024 8 C -0.133 4.133 9 C -0.026 4.026 10 N -0.248 5.248 11 C 0.061 3.939 12 C -0.552 4.552 13 H 0.082 0.918 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.030 4.030 21 C 0.016 3.984 22 C -0.179 4.179 23 C -0.107 4.107 24 C -0.205 4.205 25 C -0.055 4.055 26 N -0.172 5.172 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.179 0.821 32 H 0.122 0.878 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.012 0.988 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.931 8.832 -4.098 12.558 hybrid contribution -1.180 0.546 0.233 1.321 sum 6.751 9.378 -3.866 12.185 Atomic orbital electron populations 1.21174 0.88862 1.05955 1.03131 1.20156 0.97693 0.90724 0.90540 1.21723 0.92449 1.00509 1.07572 1.18100 0.86800 0.81687 0.99427 1.91582 1.80079 1.44822 1.93569 1.66966 1.42251 0.97857 1.16593 1.22431 0.91289 0.94166 0.94464 1.21093 0.94274 0.97143 1.00787 1.20905 0.97831 0.90023 0.93802 1.62201 1.14175 1.45627 1.02823 1.19962 0.89236 0.85393 0.99274 1.21137 1.03408 0.96518 1.34185 0.91813 1.24946 0.98037 0.95091 0.96166 1.69980 1.34664 1.04663 1.43543 0.86698 0.82557 0.77765 0.81211 1.20372 1.21404 1.20195 1.20946 0.93683 1.00190 0.88162 1.21084 0.93400 0.88508 0.95438 1.21840 1.01745 0.99150 0.95142 1.21461 0.95852 0.97890 0.95535 1.22038 1.02533 0.94422 1.01479 1.22725 0.95083 0.98163 0.89488 1.67597 1.07837 1.28760 1.12965 0.90679 0.91715 0.86253 0.84041 0.82076 0.87793 0.94378 0.92607 0.98765 0.92942 0.93630 0.90881 0.85517 0.85510 0.85446 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.46 36.01 0.34 -1.55 16 2 C 0.02 0.24 5.92 -104.34 -0.62 -0.38 16 3 C -0.20 -2.62 9.79 -39.37 -0.39 -3.01 16 4 C 0.29 4.23 8.41 -17.35 -0.15 4.08 16 5 F -0.12 -1.72 17.29 2.25 0.04 -1.68 16 6 N -0.52 -7.88 10.37 -13.59 -0.14 -8.02 16 7 C 0.13 1.84 10.09 -17.55 -0.18 1.66 16 8 C -0.13 -1.90 4.49 -104.48 -0.47 -2.37 16 9 C 0.10 1.71 4.14 -4.98 -0.02 1.69 16 10 N -0.52 -9.94 3.39 -238.96 -0.81 -10.75 16 11 C 0.19 4.48 4.59 -4.98 -0.02 4.46 16 12 C -0.51 -13.23 8.25 -34.44 -0.28 -13.52 16 13 H 0.06 1.56 5.77 -52.48 -0.30 1.26 16 14 C 0.06 1.61 5.45 -17.82 -0.10 1.51 16 15 N -0.89 -25.54 13.30 55.43 0.74 -24.81 16 16 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.10 1.69 5.14 -4.98 -0.03 1.67 16 21 C 0.15 2.71 5.74 -82.59 -0.47 2.24 16 22 C -0.16 -2.39 9.72 -39.44 -0.38 -2.77 16 23 C -0.08 -1.07 10.18 -39.28 -0.40 -1.47 16 24 C -0.18 -2.46 10.11 -39.44 -0.40 -2.86 16 25 C 0.10 1.64 11.18 -17.55 -0.20 1.44 16 26 N -0.46 -8.79 8.55 -9.47 -0.08 -8.87 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 29 H 0.12 2.06 4.36 -51.93 -0.23 1.83 16 30 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 31 H 0.16 1.87 8.00 -52.49 -0.42 1.46 16 32 H 0.10 1.90 6.55 -51.93 -0.34 1.56 16 33 H 0.04 0.61 7.92 -51.93 -0.41 0.20 16 34 H 0.06 1.48 5.69 -51.93 -0.30 1.19 16 35 H -0.01 -0.15 8.09 -51.93 -0.42 -0.57 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 38 H 0.07 1.10 6.41 -51.93 -0.33 0.77 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -30.00 352.17 -8.99 -38.99 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.26 Total: 3.41 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -3.76 Total: -9.18 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.29 Total: -52.44 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.00 -8.99 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891938145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.684 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds