Wall clock time and date at job start Tue Mar 31 2020 10:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38540 * 120.77212 * 2 1 4 4 C 1.38522 * 119.13690 * 180.27661 * 3 2 1 5 5 F 1.35100 * 119.65490 * 179.70407 * 4 3 2 6 6 N 1.32062 * 120.70050 * 359.72612 * 4 3 2 7 7 C 1.31907 * 121.68844 * 0.02562 * 6 4 3 8 8 C 1.38151 * 120.79510 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.38923 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47137 * 253.83263 * 9 8 7 11 11 C 1.46900 * 111.00235 * 191.72823 * 10 9 8 12 12 C 1.50702 * 109.47280 * 69.16583 * 11 10 9 13 13 H 1.08006 * 119.99955 * 5.09903 * 12 11 10 14 14 C 1.37873 * 120.00364 * 185.09531 * 12 11 10 15 15 N 1.31522 * 119.99468 * 354.58218 * 14 12 11 16 16 Si 1.86792 * 120.00483 * 174.57976 * 14 12 11 17 17 H 1.48504 * 109.46882 * 64.99959 * 16 14 12 18 18 H 1.48497 * 109.47545 * 185.00364 * 16 14 12 19 19 H 1.48504 * 109.47106 * 305.00429 * 16 14 12 20 20 C 1.46899 * 111.00378 * 67.76980 * 10 9 8 21 21 C 1.50694 * 109.47314 * 190.00219 * 20 10 9 22 22 C 1.38232 * 119.61659 * 95.00157 * 21 20 10 23 23 C 1.38627 * 119.15948 * 180.02562 * 22 21 20 24 24 C 1.38670 * 118.42387 * 0.02562 * 23 22 21 25 25 C 1.38185 * 119.16083 * 0.26886 * 24 23 22 26 26 N 1.31850 * 119.61956 * 275.02038 * 21 20 10 27 27 H 1.09002 * 109.46886 * 270.58326 * 1 2 3 28 28 H 1.08998 * 109.47248 * 30.57880 * 1 2 3 29 29 H 1.08996 * 109.47272 * 150.58386 * 1 2 3 30 30 H 1.08003 * 120.43697 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.60221 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47651 * 133.83194 * 9 8 7 33 33 H 1.09003 * 109.47363 * 13.82374 * 9 8 7 34 34 H 1.08999 * 109.47334 * 189.17066 * 11 10 9 35 35 H 1.08998 * 109.46968 * 309.17023 * 11 10 9 36 36 H 0.96998 * 119.99508 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.46815 * 70.00199 * 20 10 9 38 38 H 1.09007 * 109.46928 * 310.00582 * 20 10 9 39 39 H 1.07998 * 120.41746 * 0.04535 * 22 21 20 40 40 H 1.07998 * 120.78863 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.42222 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.61979 * 179.70187 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1903 0.0000 4 6 3.6005 1.1508 -0.0058 5 9 4.3021 2.3053 -0.0120 6 7 4.2421 -0.0035 -0.0059 7 6 3.5976 -1.1544 -0.0010 8 6 2.2166 -1.1918 0.0050 9 6 1.4897 -2.5118 0.0111 10 7 0.9100 -2.7578 -1.3161 11 6 -0.0316 -3.8847 -1.2787 12 6 -1.2562 -3.4903 -0.4940 13 1 -1.3652 -2.4770 -0.1362 14 6 -2.2376 -4.4228 -0.2329 15 7 -2.1575 -5.6261 -0.7575 16 14 -3.6809 -3.9772 0.8660 17 1 -4.4902 -2.9162 0.2142 18 1 -4.5251 -5.1788 1.0861 19 1 -3.1748 -3.4819 2.1714 20 6 1.9618 -2.9836 -2.3164 21 6 1.3520 -2.9872 -3.6945 22 6 1.3466 -1.8245 -4.4421 23 6 0.7827 -1.8384 -5.7084 24 6 0.2424 -3.0264 -6.1774 25 6 0.2788 -4.1475 -5.3704 26 7 0.8296 -4.0992 -4.1730 27 1 -0.3633 0.0105 1.0276 28 1 -0.3634 0.8847 -0.5228 29 1 -0.3633 -0.8951 -0.5047 30 1 1.6957 2.1369 -0.0004 31 1 4.1563 -2.0786 -0.0017 32 1 0.6942 -2.4851 0.7558 33 1 2.1896 -3.3109 0.2556 34 1 -0.3213 -4.1500 -2.2954 35 1 0.4453 -4.7409 -0.8017 36 1 -2.8478 -6.2823 -0.5735 37 1 2.4414 -3.9443 -2.1288 38 1 2.7038 -2.1878 -2.2494 39 1 1.7765 -0.9170 -4.0448 40 1 0.7645 -0.9453 -6.3153 41 1 -0.2047 -3.0738 -7.1593 42 1 -0.1442 -5.0753 -5.7263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891938145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:32 Heat of formation + Delta-G solvation = 19.472306 kcal Electronic energy + Delta-G solvation = -26155.440164 eV Core-core repulsion = 22435.508751 eV Total energy + Delta-G solvation = -3719.931413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.01078 -41.46720 -40.94938 -38.24344 -35.07650 -34.66584 -33.38548 -32.93601 -32.02038 -29.46331 -28.74592 -27.71208 -25.85267 -24.34690 -24.01793 -23.39650 -22.67782 -21.43175 -18.73865 -18.47721 -18.22083 -17.63690 -17.16060 -17.09600 -16.83698 -16.69011 -16.26086 -15.80802 -15.44517 -15.35341 -14.91505 -14.64472 -14.47443 -14.18492 -14.05880 -13.76324 -13.61620 -13.53364 -13.46785 -13.21167 -12.99112 -12.83893 -12.60834 -12.47836 -12.34453 -12.29069 -11.72719 -11.25093 -10.71122 -10.64451 -10.49682 -10.47217 -10.16665 -9.94354 -9.74942 -9.00795 -8.09777 -6.17567 -0.09830 0.14367 0.29076 0.50947 1.44643 1.46152 1.53332 2.43879 2.52942 2.59359 2.89508 3.23386 3.43852 3.50398 3.59259 3.80156 3.86112 3.89308 3.96215 4.09652 4.26016 4.35112 4.41828 4.50631 4.54017 4.62136 4.66783 4.77128 4.84881 4.86459 4.88761 4.94072 5.02145 5.27336 5.32638 5.34357 5.35200 5.53742 5.55856 5.68674 5.83573 5.90358 6.17972 6.34977 6.59779 6.64010 6.99667 7.25142 7.50289 9.00690 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.005552 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.546348 B = 5042.040985 C = 7203.160692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.015 3.985 3 C -0.188 4.188 4 C 0.286 3.714 5 F -0.121 7.121 6 N -0.539 5.539 7 C 0.138 3.862 8 C -0.135 4.135 9 C 0.108 3.892 10 N -0.517 5.517 11 C 0.205 3.795 12 C -0.515 4.515 13 H 0.076 0.924 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.956 3.044 17 H -0.270 1.270 18 H -0.292 1.292 19 H -0.264 1.264 20 C 0.104 3.896 21 C 0.122 3.878 22 C -0.161 4.161 23 C -0.077 4.077 24 C -0.172 4.172 25 C 0.077 3.923 26 N -0.510 5.510 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.170 0.830 31 H 0.179 0.821 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.030 0.970 35 H -0.045 1.045 36 H 0.259 0.741 37 H 0.029 0.971 38 H 0.096 0.904 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.145 12.310 -5.004 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.007 3.993 3 C -0.208 4.208 4 C 0.133 3.867 5 F -0.100 7.100 6 N -0.254 5.254 7 C -0.018 4.018 8 C -0.138 4.138 9 C -0.020 4.020 10 N -0.241 5.241 11 C 0.079 3.921 12 C -0.554 4.554 13 H 0.094 0.906 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.781 3.219 17 H -0.195 1.195 18 H -0.218 1.218 19 H -0.188 1.188 20 C -0.024 4.024 21 C -0.015 4.015 22 C -0.181 4.181 23 C -0.103 4.103 24 C -0.192 4.192 25 C -0.080 4.080 26 N -0.220 5.220 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.188 0.812 31 H 0.196 0.804 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.048 0.952 35 H -0.028 1.028 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.114 0.886 39 H 0.161 0.839 40 H 0.185 0.815 41 H 0.183 0.817 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.753 11.866 -4.629 14.911 hybrid contribution -1.053 -0.350 0.323 1.156 sum 6.700 11.516 -4.306 14.002 Atomic orbital electron populations 1.21085 0.88783 1.05272 1.03527 1.20220 0.97786 0.90893 0.90448 1.21867 0.91783 1.01157 1.06030 1.18303 0.87393 0.81556 0.99426 1.91586 1.80154 1.44709 1.93549 1.66991 1.42781 0.98333 1.17279 1.22607 0.90988 0.94577 0.93635 1.20834 0.94535 0.96090 1.02314 1.20772 0.97398 0.91666 0.92149 1.62089 1.14772 1.42785 1.04428 1.19520 0.89913 0.85699 0.96986 1.21540 1.03565 0.96920 1.33355 0.90648 1.25815 1.01028 0.94982 0.97614 1.70143 1.35784 1.05929 1.45447 0.85639 0.79126 0.77343 0.79757 1.19511 1.21832 1.18833 1.20953 0.93358 1.00063 0.88035 1.21189 0.95001 0.89467 0.95884 1.22049 1.01605 0.98605 0.95821 1.21947 0.94179 0.99188 0.94982 1.22419 1.01064 0.93366 1.02355 1.23080 0.95630 0.99960 0.89348 1.67480 1.09431 1.30281 1.14826 0.89855 0.89565 0.89546 0.81218 0.80439 0.89576 0.94175 0.95154 1.02763 0.93241 0.95309 0.88618 0.83888 0.81535 0.81747 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.46 71.24 0.67 -2.73 16 2 C 0.01 0.38 5.92 -19.68 -0.12 0.26 16 3 C -0.19 -4.31 9.79 22.41 0.22 -4.09 16 4 C 0.29 7.55 8.41 84.73 0.71 8.26 16 5 F -0.12 -3.14 17.29 44.97 0.78 -2.36 16 6 N -0.54 -15.26 10.37 -196.91 -2.04 -17.30 16 7 C 0.14 3.62 10.09 84.66 0.85 4.48 16 8 C -0.13 -3.79 4.49 -19.77 -0.09 -3.88 16 9 C 0.11 3.68 4.14 85.56 0.35 4.03 16 10 N -0.52 -20.17 3.39 -909.94 -3.08 -23.25 16 11 C 0.20 10.40 4.59 85.56 0.39 10.79 16 12 C -0.52 -27.21 8.25 25.60 0.21 -27.00 16 13 H 0.08 3.73 5.77 -2.91 -0.02 3.71 16 14 C 0.00 0.19 5.45 84.65 0.46 0.66 16 15 N -0.93 -55.62 13.30 21.45 0.29 -55.33 16 16 Si 0.96 42.69 29.54 68.60 2.03 44.71 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 20 C 0.10 3.67 5.14 85.56 0.44 4.11 16 21 C 0.12 4.37 5.74 42.55 0.24 4.62 16 22 C -0.16 -4.59 9.72 22.36 0.22 -4.37 16 23 C -0.08 -1.81 10.18 22.47 0.23 -1.58 16 24 C -0.17 -4.22 10.11 22.36 0.23 -3.99 16 25 C 0.08 2.46 11.18 84.67 0.95 3.41 16 26 N -0.51 -20.21 8.55 -183.88 -1.57 -21.78 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 1.84 8.11 -2.39 -0.02 1.82 16 29 H 0.09 2.91 4.36 -2.39 -0.01 2.90 16 30 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.18 3.93 8.00 -2.91 -0.02 3.90 16 32 H 0.09 3.22 6.55 -2.39 -0.02 3.21 16 33 H 0.04 1.33 7.92 -2.39 -0.02 1.31 16 34 H 0.03 1.71 5.69 -2.39 -0.01 1.70 16 35 H -0.05 -2.61 8.09 -2.39 -0.02 -2.63 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 38 H 0.10 2.86 6.41 -2.38 -0.02 2.84 16 39 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 40 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 42 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -67.67 352.17 3.41 -64.26 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 1.04 Total: 18.07 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.98 Total: -7.03 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -6.41 Total: -117.66 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -67.67 3.41 -64.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891938145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.735 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds