Wall clock time and date at job start Tue Mar 31 2020 10:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36695 * 126.58415 * 2 1 4 4 C 1.47396 * 125.78546 * 0.02562 * 3 2 1 5 5 O 1.21611 * 119.99657 * 354.86328 * 4 3 2 6 6 N 1.34775 * 120.00074 * 174.86179 * 4 3 2 7 7 C 1.37078 * 119.99830 * 185.41681 * 6 4 3 8 8 H 1.08001 * 119.99617 * 5.32757 * 7 6 4 9 9 C 1.38926 * 119.99809 * 185.33417 * 7 6 4 10 10 N 1.31402 * 120.00357 * 5.41814 * 9 7 6 11 11 Si 1.86804 * 119.99822 * 185.42068 * 9 7 6 12 12 H 1.48498 * 109.47105 * 59.99660 * 11 9 7 13 13 H 1.48493 * 109.46979 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46894 * 299.99837 * 11 9 7 15 15 C 1.39337 * 120.00300 * 5.41524 * 6 4 3 16 16 C 1.39094 * 119.69620 * 84.91019 * 15 6 4 17 17 C 1.38371 * 119.09316 * 179.72704 * 16 15 6 18 18 C 1.38835 * 118.49402 * 0.56028 * 17 16 15 19 19 C 1.38138 * 119.31625 * 359.43919 * 18 17 16 20 20 N 1.31886 * 120.85386 * 0.29634 * 19 18 17 21 21 N 1.34431 * 108.43578 * 180.28347 * 3 2 1 22 22 N 1.28757 * 109.52692 * 359.55091 * 21 3 2 23 23 N 1.34821 * 126.59292 * 180.02562 * 2 1 3 24 24 C 1.46506 * 126.58652 * 0.02562 * 23 2 1 25 25 C 1.53003 * 109.46823 * 120.00484 * 24 23 2 26 26 C 1.52997 * 109.47206 * 240.00296 * 24 23 2 27 27 H 1.09008 * 109.47340 * 89.97404 * 1 2 3 28 28 H 1.08996 * 109.47286 * 209.97157 * 1 2 3 29 29 H 1.08995 * 109.47486 * 329.97612 * 1 2 3 30 30 H 0.97001 * 120.00467 * 180.02562 * 10 9 7 31 31 H 1.07993 * 120.45371 * 0.02562 * 16 15 6 32 32 H 1.08006 * 120.75531 * 180.27921 * 17 16 15 33 33 H 1.08002 * 120.34322 * 179.71528 * 18 17 16 34 34 H 1.08002 * 119.57654 * 180.27850 * 19 18 17 35 35 H 1.09001 * 109.47048 * 0.02562 * 24 23 2 36 36 H 1.09000 * 109.47586 * 60.00024 * 25 24 23 37 37 H 1.09006 * 109.46799 * 179.97438 * 25 24 23 38 38 H 1.08996 * 109.47089 * 299.99691 * 25 24 23 39 39 H 1.08999 * 109.47109 * 60.00213 * 26 24 23 40 40 H 1.08999 * 109.47374 * 180.02562 * 26 24 23 41 41 H 1.09001 * 109.47460 * 300.00168 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3217 1.0976 0.0000 4 6 1.8752 2.5024 0.0005 5 8 0.6913 2.7641 -0.0933 6 7 2.7791 3.4967 0.1050 7 6 2.3582 4.7964 0.2174 8 1 1.3049 5.0169 0.3088 9 6 3.2866 5.8299 0.2134 10 7 4.5564 5.5717 -0.0044 11 14 2.7297 7.5868 0.5180 12 1 2.0949 7.6797 1.8572 13 1 3.9034 8.4947 0.4630 14 1 1.7480 7.9824 -0.5237 15 6 4.1412 3.2035 0.0989 16 6 4.8105 3.0636 -1.1124 17 6 6.1644 2.7781 -1.1040 18 6 6.8025 2.6301 0.1202 19 6 6.0753 2.7826 1.2847 20 7 4.7866 3.0602 1.2460 21 7 3.5991 0.6789 -0.0063 22 7 3.6301 -0.6083 -0.0007 23 7 2.3107 -1.0825 -0.0005 24 6 1.8867 -2.4848 -0.0016 25 6 2.4301 -3.1808 -1.2512 26 6 2.4290 -3.1826 1.2473 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 5.2047 6.2932 -0.0068 31 1 4.2817 3.1811 -2.0467 32 1 6.7115 2.6683 -2.0287 33 1 7.8574 2.4025 0.1616 34 1 6.5684 2.6728 2.2393 35 1 0.7979 -2.5352 -0.0025 36 1 3.5189 -3.1304 -1.2507 37 1 2.1151 -4.2244 -1.2518 38 1 2.0438 -2.6837 -2.1409 39 1 2.0419 -2.6868 2.1375 40 1 2.1140 -4.2261 1.2462 41 1 3.5178 -3.1322 1.2479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892477811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:25 Heat of formation + Delta-G solvation = 116.466916 kcal Electronic energy + Delta-G solvation = -27147.656580 eV Core-core repulsion = 23451.851131 eV Total energy + Delta-G solvation = -3695.805449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72100 -39.36277 -37.66386 -36.21016 -34.74144 -32.58761 -31.87765 -31.09249 -30.41468 -28.90191 -27.55193 -27.52458 -25.16452 -23.61794 -22.71624 -22.26099 -21.77326 -19.91966 -19.16252 -17.98936 -17.09207 -15.82953 -15.74376 -15.37356 -15.03053 -14.92875 -14.50864 -14.19165 -13.81524 -13.69156 -13.56218 -13.01336 -12.85997 -12.83084 -12.75208 -12.45852 -12.33886 -12.21044 -12.02884 -11.69174 -11.57387 -11.49492 -11.17665 -11.08065 -10.97277 -10.49539 -10.43039 -10.29463 -9.77652 -9.58585 -8.85537 -8.57689 -8.47794 -8.36040 -7.82468 -7.73847 -6.18804 -3.91305 1.63357 2.38363 2.44939 2.52282 2.64818 3.23557 3.25361 3.28357 4.03044 4.21840 4.27896 4.61182 4.62821 4.65104 4.74937 4.99516 5.13242 5.23102 5.26746 5.27964 5.36678 5.42917 5.47540 5.62610 5.72700 5.80350 5.84244 5.89247 5.90103 6.10103 6.15559 6.23889 6.39508 6.44779 6.72818 6.89321 6.90225 7.28970 7.32177 7.48644 7.78294 8.01396 8.37745 8.61313 9.03416 9.26012 9.46166 9.79681 10.65775 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017044 B = 0.005181 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.409707 B = 5403.114520 C = 6563.366145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.097 3.903 3 C -0.073 4.073 4 C 0.533 3.467 5 O -0.575 6.575 6 N -0.388 5.388 7 C -0.305 4.305 8 H 0.114 0.886 9 C 0.032 3.968 10 N -0.863 5.863 11 Si 0.940 3.060 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.464 3.536 16 C -0.119 4.119 17 C -0.072 4.072 18 C -0.201 4.201 19 C 0.114 3.886 20 N -0.485 5.485 21 N -0.196 5.196 22 N -0.082 5.082 23 N -0.366 5.366 24 C 0.147 3.853 25 C -0.160 4.160 26 C -0.161 4.161 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.274 0.726 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.596 -14.857 -1.328 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C -0.212 4.212 4 C 0.321 3.679 5 O -0.458 6.458 6 N -0.103 5.103 7 C -0.432 4.432 8 H 0.132 0.868 9 C -0.172 4.172 10 N -0.501 5.501 11 Si 0.766 3.234 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.237 3.763 16 C -0.142 4.142 17 C -0.099 4.099 18 C -0.222 4.222 19 C -0.044 4.044 20 N -0.197 5.197 21 N -0.068 5.068 22 N -0.060 5.060 23 N -0.154 5.154 24 C 0.045 3.955 25 C -0.218 4.218 26 C -0.219 4.219 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.976 -14.887 -0.613 14.931 hybrid contribution -0.370 0.985 -0.616 1.219 sum -1.345 -13.902 -1.229 14.021 Atomic orbital electron populations 1.20562 0.85417 1.04488 1.03941 1.21736 0.95835 0.86412 0.99989 1.21582 0.88478 0.96183 1.14968 1.16241 0.85452 0.81497 0.84715 1.90583 1.15601 1.82718 1.56946 1.40964 1.02024 1.06483 1.60857 1.19828 0.95328 0.79038 1.48963 0.86787 1.25347 0.94962 1.00802 0.96113 1.69567 1.01300 1.33209 1.46022 0.85772 0.77898 0.80476 0.79243 1.19703 1.20888 1.19681 1.17299 0.84081 0.86835 0.88112 1.21343 0.94553 1.00642 0.97635 1.20912 0.93957 0.97936 0.97048 1.21549 0.99622 1.07032 0.93995 1.21929 0.89578 0.96070 0.96782 1.67071 1.09708 1.12538 1.30418 1.74810 1.19209 1.03207 1.09601 1.81836 0.96124 1.04123 1.23958 1.50479 1.06622 1.06546 1.51801 1.21455 1.00089 0.76175 0.97756 1.22131 1.03162 1.00411 0.96128 1.22137 1.03199 1.00402 0.96180 0.89778 0.91772 0.87110 0.91397 0.87600 0.87143 0.87186 0.85268 0.87806 0.90821 0.90418 0.91846 0.91832 0.90419 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 9.36 36.00 0.34 -0.86 16 2 C 0.10 1.73 7.02 -81.84 -0.57 1.16 16 3 C -0.07 -1.63 6.75 -83.56 -0.56 -2.20 16 4 C 0.53 13.82 7.58 -12.53 -0.10 13.72 16 5 O -0.58 -15.23 14.39 5.27 0.08 -15.15 16 6 N -0.39 -10.66 2.73 -61.85 -0.17 -10.83 16 7 C -0.30 -8.62 9.53 -14.95 -0.14 -8.76 16 8 H 0.11 3.24 7.20 -52.49 -0.38 2.86 16 9 C 0.03 0.87 5.42 -17.48 -0.09 0.77 16 10 N -0.86 -23.43 9.77 55.49 0.54 -22.89 16 11 Si 0.94 21.10 29.56 -169.99 -5.02 16.08 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 C 0.46 11.99 1.27 -154.71 -0.20 11.80 16 16 C -0.12 -2.85 8.14 -39.22 -0.32 -3.17 16 17 C -0.07 -1.50 10.17 -39.31 -0.40 -1.89 16 18 C -0.20 -3.98 10.11 -39.40 -0.40 -4.38 16 19 C 0.11 2.50 11.18 -17.56 -0.20 2.30 16 20 N -0.48 -12.40 10.01 -12.35 -0.12 -12.53 16 21 N -0.20 -4.37 9.25 32.84 0.30 -4.07 16 22 N -0.08 -1.58 13.66 60.35 0.82 -0.75 16 23 N -0.37 -5.75 3.28 -50.38 -0.17 -5.92 16 24 C 0.15 1.52 3.68 -67.93 -0.25 1.27 16 25 C -0.16 -1.42 9.47 37.16 0.35 -1.07 16 26 C -0.16 -1.47 9.47 37.16 0.35 -1.11 16 27 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.06 0.65 7.19 -51.93 -0.37 0.28 16 29 H 0.11 1.82 6.55 -51.93 -0.34 1.48 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 32 H 0.11 1.93 8.06 -52.48 -0.42 1.50 16 33 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.10 0.83 6.79 -51.93 -0.35 0.47 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -33.75 348.36 -5.91 -39.66 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.23 Total: 3.58 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -2.19 Total: 7.57 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 1.21 Total: -56.98 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.08 Total: -15.15 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.75 -5.91 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.127 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds