Wall clock time and date at job start Tue Mar 31 2020 10:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36695 * 126.58415 * 2 1 4 4 C 1.47396 * 125.78546 * 0.02562 * 3 2 1 5 5 O 1.21611 * 119.99657 * 354.86328 * 4 3 2 6 6 N 1.34775 * 120.00074 * 174.86179 * 4 3 2 7 7 C 1.37078 * 119.99830 * 185.41681 * 6 4 3 8 8 H 1.08001 * 119.99617 * 5.32757 * 7 6 4 9 9 C 1.38926 * 119.99809 * 185.33417 * 7 6 4 10 10 N 1.31402 * 120.00357 * 5.41814 * 9 7 6 11 11 Si 1.86804 * 119.99822 * 185.42068 * 9 7 6 12 12 H 1.48498 * 109.47105 * 59.99660 * 11 9 7 13 13 H 1.48493 * 109.46979 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46894 * 299.99837 * 11 9 7 15 15 C 1.39337 * 120.00300 * 5.41524 * 6 4 3 16 16 C 1.39094 * 119.69620 * 84.91019 * 15 6 4 17 17 C 1.38371 * 119.09316 * 179.72704 * 16 15 6 18 18 C 1.38835 * 118.49402 * 0.56028 * 17 16 15 19 19 C 1.38138 * 119.31625 * 359.43919 * 18 17 16 20 20 N 1.31886 * 120.85386 * 0.29634 * 19 18 17 21 21 N 1.34431 * 108.43578 * 180.28347 * 3 2 1 22 22 N 1.28757 * 109.52692 * 359.55091 * 21 3 2 23 23 N 1.34821 * 126.59292 * 180.02562 * 2 1 3 24 24 C 1.46506 * 126.58652 * 0.02562 * 23 2 1 25 25 C 1.53003 * 109.46823 * 120.00484 * 24 23 2 26 26 C 1.52997 * 109.47206 * 240.00296 * 24 23 2 27 27 H 1.09008 * 109.47340 * 89.97404 * 1 2 3 28 28 H 1.08996 * 109.47286 * 209.97157 * 1 2 3 29 29 H 1.08995 * 109.47486 * 329.97612 * 1 2 3 30 30 H 0.97001 * 120.00467 * 180.02562 * 10 9 7 31 31 H 1.07993 * 120.45371 * 0.02562 * 16 15 6 32 32 H 1.08006 * 120.75531 * 180.27921 * 17 16 15 33 33 H 1.08002 * 120.34322 * 179.71528 * 18 17 16 34 34 H 1.08002 * 119.57654 * 180.27850 * 19 18 17 35 35 H 1.09001 * 109.47048 * 0.02562 * 24 23 2 36 36 H 1.09000 * 109.47586 * 60.00024 * 25 24 23 37 37 H 1.09006 * 109.46799 * 179.97438 * 25 24 23 38 38 H 1.08996 * 109.47089 * 299.99691 * 25 24 23 39 39 H 1.08999 * 109.47109 * 60.00213 * 26 24 23 40 40 H 1.08999 * 109.47374 * 180.02562 * 26 24 23 41 41 H 1.09001 * 109.47460 * 300.00168 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3217 1.0976 0.0000 4 6 1.8752 2.5024 0.0005 5 8 0.6913 2.7641 -0.0933 6 7 2.7791 3.4967 0.1050 7 6 2.3582 4.7964 0.2174 8 1 1.3049 5.0169 0.3088 9 6 3.2866 5.8299 0.2134 10 7 4.5564 5.5717 -0.0044 11 14 2.7297 7.5868 0.5180 12 1 2.0949 7.6797 1.8572 13 1 3.9034 8.4947 0.4630 14 1 1.7480 7.9824 -0.5237 15 6 4.1412 3.2035 0.0989 16 6 4.8105 3.0636 -1.1124 17 6 6.1644 2.7781 -1.1040 18 6 6.8025 2.6301 0.1202 19 6 6.0753 2.7826 1.2847 20 7 4.7866 3.0602 1.2460 21 7 3.5991 0.6789 -0.0063 22 7 3.6301 -0.6083 -0.0007 23 7 2.3107 -1.0825 -0.0005 24 6 1.8867 -2.4848 -0.0016 25 6 2.4301 -3.1808 -1.2512 26 6 2.4290 -3.1826 1.2473 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 5.2047 6.2932 -0.0068 31 1 4.2817 3.1811 -2.0467 32 1 6.7115 2.6683 -2.0287 33 1 7.8574 2.4025 0.1616 34 1 6.5684 2.6728 2.2393 35 1 0.7979 -2.5352 -0.0025 36 1 3.5189 -3.1304 -1.2507 37 1 2.1151 -4.2244 -1.2518 38 1 2.0438 -2.6837 -2.1409 39 1 2.0419 -2.6868 2.1375 40 1 2.1140 -4.2261 1.2462 41 1 3.5178 -3.1322 1.2479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892477811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:24 Heat of formation + Delta-G solvation = 93.602995 kcal Electronic energy + Delta-G solvation = -27148.648034 eV Core-core repulsion = 23451.851131 eV Total energy + Delta-G solvation = -3696.796903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.18267 -41.15927 -39.49737 -37.26670 -36.64741 -33.96121 -33.77883 -32.83088 -31.77000 -30.66568 -28.93615 -28.25312 -27.06387 -24.88106 -24.39661 -23.97783 -23.44609 -21.16532 -20.79655 -19.87417 -18.48781 -17.31279 -17.27150 -17.06857 -16.82631 -16.59134 -16.01525 -15.69975 -15.27835 -15.17515 -15.01417 -14.59475 -14.20286 -14.15502 -13.91479 -13.86279 -13.67929 -13.41337 -13.17183 -13.16489 -12.92469 -12.84736 -12.76860 -12.49798 -12.29212 -12.24838 -12.15934 -11.80932 -11.55624 -11.01759 -10.76400 -10.37250 -10.22054 -10.02118 -9.68744 -9.52646 -8.14077 -6.00916 0.23616 0.74566 0.83018 0.94068 1.19652 1.39325 1.45925 1.51122 2.20544 2.35952 2.75898 3.15503 3.26548 3.38970 3.48763 3.69031 3.82337 3.85341 4.00917 4.14078 4.20258 4.29004 4.55294 4.61821 4.63171 4.65315 4.68619 4.71910 4.75968 4.77332 4.88347 4.97288 5.17255 5.19695 5.19842 5.25985 5.39536 5.59302 5.62855 5.71232 5.88859 6.16101 6.45686 6.96122 7.11675 7.33141 7.66655 7.84455 8.63601 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017044 B = 0.005181 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.409707 B = 5403.114520 C = 6563.366145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.115 3.885 3 C -0.119 4.119 4 C 0.525 3.475 5 O -0.598 6.598 6 N -0.409 5.409 7 C -0.345 4.345 8 H 0.096 0.904 9 C -0.003 4.003 10 N -0.875 5.875 11 Si 1.004 2.996 12 H -0.272 1.272 13 H -0.272 1.272 14 H -0.265 1.265 15 C 0.454 3.546 16 C -0.141 4.141 17 C -0.068 4.068 18 C -0.189 4.189 19 C 0.100 3.900 20 N -0.522 5.522 21 N -0.219 5.219 22 N -0.092 5.092 23 N -0.346 5.346 24 C 0.131 3.869 25 C -0.156 4.156 26 C -0.157 4.157 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.273 0.727 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.117 0.883 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -17.194 -1.390 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 C -0.259 4.259 4 C 0.314 3.686 5 O -0.483 6.483 6 N -0.125 5.125 7 C -0.471 4.471 8 H 0.114 0.886 9 C -0.206 4.206 10 N -0.512 5.512 11 Si 0.826 3.174 12 H -0.198 1.198 13 H -0.197 1.197 14 H -0.190 1.190 15 C 0.228 3.772 16 C -0.163 4.163 17 C -0.094 4.094 18 C -0.209 4.209 19 C -0.058 4.058 20 N -0.235 5.235 21 N -0.091 5.091 22 N -0.071 5.071 23 N -0.134 5.134 24 C 0.031 3.969 25 C -0.213 4.213 26 C -0.215 4.215 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.163 0.837 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.523 -17.277 -0.682 17.299 hybrid contribution -0.511 1.468 -0.590 1.663 sum -1.034 -15.809 -1.272 15.894 Atomic orbital electron populations 1.20689 0.82554 1.05529 1.05326 1.22188 0.97311 0.85698 0.97153 1.21372 0.89909 0.95542 1.19059 1.16865 0.85281 0.82966 0.83452 1.90524 1.16324 1.83703 1.57742 1.41182 1.03311 1.06478 1.61518 1.19872 0.95058 0.80576 1.51603 0.88620 1.26166 0.94994 1.04179 0.95243 1.69743 1.01795 1.33974 1.45727 0.84837 0.77832 0.75734 0.78965 1.19766 1.19685 1.18995 1.17269 0.83393 0.87844 0.88717 1.21323 0.96069 1.02585 0.96356 1.21341 0.92745 0.96189 0.99143 1.21973 1.01534 1.04729 0.92647 1.22530 0.88773 0.95498 0.98981 1.67005 1.11588 1.14067 1.30877 1.74762 1.19580 1.04328 1.10479 1.81691 0.98191 1.03151 1.24082 1.50896 1.05077 1.08166 1.49307 1.22193 1.02360 0.73130 0.99174 1.22141 1.01906 1.02449 0.94851 1.22151 1.01911 1.02487 0.94928 0.88010 0.86861 0.89837 0.91536 0.89376 0.83676 0.82646 0.82603 0.84241 0.92655 0.86479 0.92569 0.92776 0.86420 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 9.36 71.23 0.67 -1.51 16 2 C 0.12 4.07 7.02 41.74 0.29 4.36 16 3 C -0.12 -5.55 6.75 40.80 0.28 -5.28 16 4 C 0.53 28.89 7.58 86.65 0.66 29.55 16 5 O -0.60 -33.63 14.39 -4.07 -0.06 -33.69 16 6 N -0.41 -23.83 2.73 -467.84 -1.28 -25.11 16 7 C -0.34 -20.64 9.53 84.04 0.80 -19.84 16 8 H 0.10 5.85 7.20 -2.91 -0.02 5.82 16 9 C 0.00 -0.17 5.42 84.92 0.46 0.29 16 10 N -0.88 -48.71 9.77 21.66 0.21 -48.50 16 11 Si 1.00 44.41 29.56 68.60 2.03 46.44 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 C 0.45 24.39 1.27 132.94 0.17 24.56 16 16 C -0.14 -6.96 8.14 22.51 0.18 -6.78 16 17 C -0.07 -2.76 10.17 22.44 0.23 -2.53 16 18 C -0.19 -7.10 10.11 22.39 0.23 -6.87 16 19 C 0.10 4.30 11.18 84.66 0.95 5.25 16 20 N -0.52 -27.43 10.01 -193.00 -1.93 -29.36 16 21 N -0.22 -10.05 9.25 -50.02 -0.46 -10.51 16 22 N -0.09 -3.55 13.66 37.02 0.51 -3.05 16 23 N -0.35 -10.42 3.28 -313.30 -1.03 -11.45 16 24 C 0.13 2.25 3.68 44.99 0.17 2.41 16 25 C -0.16 -2.26 9.47 71.98 0.68 -1.58 16 26 C -0.16 -2.35 9.47 71.98 0.68 -1.67 16 27 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.11 1.83 7.19 -2.39 -0.02 1.82 16 29 H 0.08 2.76 6.55 -2.39 -0.02 2.75 16 30 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.15 4.74 8.06 -2.91 -0.02 4.72 16 33 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.16 5.63 8.06 -2.91 -0.02 5.61 16 35 H 0.14 1.48 6.79 -2.39 -0.02 1.47 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -80.38 348.36 5.47 -74.91 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 1.05 Total: 19.93 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 6.43 Total: 20.37 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -3.98 Total: -127.97 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.06 Total: -33.69 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -80.38 5.47 -74.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.514 kcal (2) G-P(sol) polarization free energy of solvation -80.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds