Wall clock time and date at job start Tue Mar 31 2020 10:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35247 * 126.07319 * 2 1 4 4 C 1.40406 * 107.86972 * 180.15810 * 3 2 1 5 5 N 1.40157 * 125.97278 * 179.82320 * 4 3 2 6 6 C 1.34779 * 119.99598 * 359.71870 * 5 4 3 7 7 O 1.21293 * 120.00642 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99859 * 179.97438 * 6 5 4 9 9 N 1.46489 * 109.47292 * 180.02562 * 8 6 5 10 10 C 1.39001 * 120.00245 * 180.02562 * 9 8 6 11 11 C 1.39146 * 119.70404 * 359.97438 * 10 9 8 12 12 C 1.38295 * 119.09401 * 179.97438 * 11 10 9 13 13 C 1.38884 * 118.51011 * 0.02562 * 12 11 10 14 14 C 1.38022 * 119.32992 * 0.27628 * 13 12 11 15 15 N 1.31980 * 120.85123 * 359.44533 * 14 13 12 16 16 N 1.31211 * 108.05365 * 359.56676 * 4 3 2 17 17 N 1.34975 * 126.07204 * 179.67645 * 2 1 3 18 18 C 1.46496 * 125.97291 * 359.96785 * 17 2 1 19 19 C 1.50699 * 109.47160 * 270.01536 * 18 17 2 20 20 H 1.08007 * 119.99810 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00471 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99601 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47108 * 89.99865 * 23 21 19 25 25 H 1.48500 * 109.47099 * 209.99270 * 23 21 19 26 26 H 1.48496 * 109.47394 * 329.99684 * 23 21 19 27 27 H 1.09002 * 109.46918 * 270.31974 * 1 2 3 28 28 H 1.08999 * 109.47315 * 30.31630 * 1 2 3 29 29 H 1.09001 * 109.47476 * 150.32499 * 1 2 3 30 30 H 1.08007 * 126.06084 * 0.02562 * 3 2 1 31 31 H 0.96993 * 120.00341 * 179.71599 * 5 4 3 32 32 H 1.09005 * 109.46682 * 59.99924 * 8 6 5 33 33 H 1.08994 * 109.47318 * 300.00553 * 8 6 5 34 34 H 0.97003 * 119.99877 * 359.97438 * 9 8 6 35 35 H 1.08000 * 120.44826 * 0.02676 * 11 10 9 36 36 H 1.08000 * 120.74269 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.33299 * 179.97438 * 13 12 11 38 38 H 1.07989 * 119.57332 * 179.70393 * 14 13 12 39 39 H 1.09001 * 109.47581 * 30.01412 * 18 17 2 40 40 H 1.08995 * 109.47323 * 150.01456 * 18 17 2 41 41 H 0.97002 * 119.99765 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6545 -0.0037 5 7 4.7735 1.4749 -0.0084 6 6 4.6366 2.8157 -0.0154 7 8 3.5301 3.3125 -0.0182 8 6 5.8585 3.6978 -0.0199 9 7 5.4461 5.1034 -0.0267 10 6 6.4054 6.1093 -0.0323 11 6 7.7559 5.7741 -0.0308 12 6 8.6996 6.7850 -0.0370 13 6 8.2599 8.1024 -0.0438 14 6 6.9045 8.3628 -0.0385 15 7 6.0261 7.3777 -0.0380 16 7 3.6337 -0.6575 0.0036 17 7 2.3017 -1.0910 0.0062 18 6 1.8500 -2.4845 0.0147 19 6 1.6955 -2.9538 1.4384 20 1 1.9124 -2.2813 2.2552 21 6 1.2782 -4.2419 1.6983 22 7 1.0145 -5.0610 0.7037 23 14 1.0873 -4.8237 3.4631 24 1 -0.2953 -4.5467 3.9288 25 1 1.3503 -6.2835 3.5343 26 1 2.0549 -4.1036 4.3292 27 1 -0.3633 0.0057 1.0277 28 1 -0.3634 0.8871 -0.5187 29 1 -0.3634 -0.8929 -0.5088 30 1 1.9719 2.1211 0.0004 31 1 5.6584 1.0777 -0.0065 32 1 6.4540 3.4892 -0.9088 33 1 6.4538 3.4985 0.8711 34 1 4.5034 5.3323 -0.0281 35 1 8.0628 4.7386 -0.0258 36 1 9.7549 6.5551 -0.0364 37 1 8.9715 8.9148 -0.0483 38 1 6.5583 9.3856 -0.0390 39 1 0.8913 -2.5590 -0.4985 40 1 2.5845 -3.1076 -0.4955 41 1 0.7205 -5.9672 0.8865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901282114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:13 Heat of formation + Delta-G solvation = 88.473195 kcal Electronic energy + Delta-G solvation = -24352.906689 eV Core-core repulsion = 20655.887341 eV Total energy + Delta-G solvation = -3697.019348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93644 -40.41138 -39.48385 -35.93562 -34.97023 -33.45813 -32.68134 -31.62376 -31.01413 -30.33746 -27.74819 -26.52710 -26.31820 -23.90878 -23.20219 -22.54631 -21.37800 -19.96174 -19.44002 -18.19618 -17.20285 -16.75079 -16.42034 -16.22379 -16.07395 -15.88212 -15.39139 -14.72869 -14.69645 -14.55798 -14.31336 -14.12433 -13.48455 -13.26297 -13.22548 -13.03266 -12.53003 -12.35734 -12.23590 -12.11646 -11.74822 -11.46029 -11.15941 -10.87054 -10.66209 -10.55489 -10.29999 -10.10291 -10.01992 -9.76874 -9.68190 -9.60638 -8.68277 -8.05582 -8.02049 -7.56268 -6.29756 -4.37431 1.02463 1.19823 2.08781 2.31832 2.79589 3.02089 3.18411 3.25100 3.30364 3.58866 3.68605 3.71994 4.25845 4.36243 4.39261 4.58461 4.78731 4.86070 4.87409 4.96702 5.04219 5.06966 5.34836 5.46413 5.61905 5.73866 5.83398 6.00984 6.06086 6.11937 6.23160 6.37266 6.42596 6.58373 6.69933 6.86466 6.99752 7.28144 7.34312 7.50049 7.62555 7.83824 7.93347 7.96587 8.01024 8.55391 8.69672 9.29044 10.77631 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029807 B = 0.002116 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.161354 B =13232.124313 C =13582.248084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.093 3.907 3 C -0.290 4.290 4 C 0.260 3.740 5 N -0.624 5.624 6 C 0.514 3.486 7 O -0.509 6.509 8 C 0.115 3.885 9 N -0.712 5.712 10 C 0.408 3.592 11 C -0.244 4.244 12 C -0.032 4.032 13 C -0.240 4.240 14 C 0.150 3.850 15 N -0.544 5.544 16 N -0.317 5.317 17 N -0.314 5.314 18 C 0.258 3.742 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.413 0.587 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.418 0.582 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 20.645 -2.809 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.008 3.992 5 N -0.272 5.272 6 C 0.299 3.701 7 O -0.382 6.382 8 C -0.014 4.014 9 N -0.349 5.349 10 C 0.172 3.828 11 C -0.269 4.269 12 C -0.058 4.058 13 C -0.263 4.263 14 C -0.007 4.007 15 N -0.261 5.261 16 N -0.148 5.148 17 N -0.097 5.097 18 C 0.140 3.860 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.177 0.823 31 H 0.249 0.751 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.258 0.742 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.594 19.615 -2.860 22.965 hybrid contribution 0.564 -0.216 0.964 1.137 sum 12.158 19.399 -1.897 22.973 Atomic orbital electron populations 1.20344 0.87772 1.02914 1.03257 1.21087 0.94994 0.87118 1.00683 1.21234 0.89674 0.99830 1.21350 1.18919 0.86994 0.89613 1.03669 1.42253 1.07935 1.04728 1.72305 1.20323 0.91031 0.81949 0.76793 1.90679 1.26408 1.73549 1.47558 1.20985 0.94899 0.81145 1.04366 1.44106 1.08878 1.01558 1.80314 1.18253 0.87162 0.87064 0.90276 1.21433 0.91961 1.00903 1.12634 1.21320 0.99559 0.92374 0.92584 1.21822 0.97190 0.97408 1.09860 1.22413 0.89148 0.97321 0.91867 1.67139 1.39691 0.98732 1.20537 1.77256 1.00064 1.08378 1.29072 1.49021 1.00893 1.07879 1.51876 1.19719 0.96038 0.71204 0.99022 1.21302 1.46934 0.97989 0.91273 0.91763 1.24931 0.94645 0.96026 0.98194 1.69919 1.44787 1.06997 1.31187 0.86344 0.78691 0.77907 0.83689 1.20269 1.20849 1.19713 0.90341 0.90755 0.90784 0.82329 0.75138 0.88358 0.88344 0.74234 0.85058 0.85050 0.85231 0.82817 0.92711 0.92936 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.11 36.00 0.36 -1.05 16 2 C 0.09 1.90 6.92 -82.28 -0.57 1.33 16 3 C -0.29 -5.75 9.52 -39.83 -0.38 -6.13 16 4 C 0.26 5.02 8.11 -154.40 -1.25 3.77 16 5 N -0.62 -8.58 5.45 -11.13 -0.06 -8.64 16 6 C 0.51 6.48 7.87 -10.98 -0.09 6.39 16 7 O -0.51 -8.18 12.80 5.55 0.07 -8.11 16 8 C 0.11 0.95 5.37 -5.20 -0.03 0.92 16 9 N -0.71 -7.50 5.70 -61.60 -0.35 -7.85 16 10 C 0.41 4.35 7.65 -155.02 -1.19 3.16 16 11 C -0.24 -2.02 9.33 -39.22 -0.37 -2.39 16 12 C -0.03 -0.23 10.17 -39.32 -0.40 -0.63 16 13 C -0.24 -1.72 10.10 -39.42 -0.40 -2.12 16 14 C 0.15 1.31 11.17 -17.57 -0.20 1.11 16 15 N -0.54 -6.24 10.39 -12.44 -0.13 -6.37 16 16 N -0.32 -7.05 12.59 31.44 0.40 -6.66 16 17 N -0.31 -7.27 3.59 -58.33 -0.21 -7.48 16 18 C 0.26 6.49 5.99 -5.20 -0.03 6.46 16 19 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16 20 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 23 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.25 7.07 -51.93 -0.37 0.88 16 30 H 0.16 3.05 5.92 -52.48 -0.31 2.74 16 31 H 0.41 4.23 8.82 -40.82 -0.36 3.87 16 32 H 0.10 0.58 7.93 -51.93 -0.41 0.17 16 33 H 0.10 0.60 7.93 -51.93 -0.41 0.19 16 34 H 0.42 5.09 7.56 -40.82 -0.31 4.78 16 35 H 0.13 0.79 6.71 -52.49 -0.35 0.43 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.06 1.36 7.04 -51.93 -0.37 1.00 16 40 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -33.49 355.52 -9.13 -42.62 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.97 Total: 7.66 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -4.95 Total: -2.40 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.38 Total: -60.98 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.49 -9.13 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901282114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.094 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds