Wall clock time and date at job start Tue Mar 31 2020 10:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35247 * 126.07319 * 2 1 4 4 C 1.40406 * 107.86972 * 180.15810 * 3 2 1 5 5 N 1.40157 * 125.97278 * 179.82320 * 4 3 2 6 6 C 1.34779 * 119.99598 * 359.71870 * 5 4 3 7 7 O 1.21293 * 120.00642 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99859 * 179.97438 * 6 5 4 9 9 N 1.46489 * 109.47292 * 180.02562 * 8 6 5 10 10 C 1.39001 * 120.00245 * 180.02562 * 9 8 6 11 11 C 1.39146 * 119.70404 * 359.97438 * 10 9 8 12 12 C 1.38295 * 119.09401 * 179.97438 * 11 10 9 13 13 C 1.38884 * 118.51011 * 0.02562 * 12 11 10 14 14 C 1.38022 * 119.32992 * 0.27628 * 13 12 11 15 15 N 1.31980 * 120.85123 * 359.44533 * 14 13 12 16 16 N 1.31211 * 108.05365 * 359.56676 * 4 3 2 17 17 N 1.34975 * 126.07204 * 179.67645 * 2 1 3 18 18 C 1.46496 * 125.97291 * 359.96785 * 17 2 1 19 19 C 1.50699 * 109.47160 * 270.01536 * 18 17 2 20 20 H 1.08007 * 119.99810 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00471 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99601 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47108 * 89.99865 * 23 21 19 25 25 H 1.48500 * 109.47099 * 209.99270 * 23 21 19 26 26 H 1.48496 * 109.47394 * 329.99684 * 23 21 19 27 27 H 1.09002 * 109.46918 * 270.31974 * 1 2 3 28 28 H 1.08999 * 109.47315 * 30.31630 * 1 2 3 29 29 H 1.09001 * 109.47476 * 150.32499 * 1 2 3 30 30 H 1.08007 * 126.06084 * 0.02562 * 3 2 1 31 31 H 0.96993 * 120.00341 * 179.71599 * 5 4 3 32 32 H 1.09005 * 109.46682 * 59.99924 * 8 6 5 33 33 H 1.08994 * 109.47318 * 300.00553 * 8 6 5 34 34 H 0.97003 * 119.99877 * 359.97438 * 9 8 6 35 35 H 1.08000 * 120.44826 * 0.02676 * 11 10 9 36 36 H 1.08000 * 120.74269 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.33299 * 179.97438 * 13 12 11 38 38 H 1.07989 * 119.57332 * 179.70393 * 14 13 12 39 39 H 1.09001 * 109.47581 * 30.01412 * 18 17 2 40 40 H 1.08995 * 109.47323 * 150.01456 * 18 17 2 41 41 H 0.97002 * 119.99765 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6545 -0.0037 5 7 4.7735 1.4749 -0.0084 6 6 4.6366 2.8157 -0.0154 7 8 3.5301 3.3125 -0.0182 8 6 5.8585 3.6978 -0.0199 9 7 5.4461 5.1034 -0.0267 10 6 6.4054 6.1093 -0.0323 11 6 7.7559 5.7741 -0.0308 12 6 8.6996 6.7850 -0.0370 13 6 8.2599 8.1024 -0.0438 14 6 6.9045 8.3628 -0.0385 15 7 6.0261 7.3777 -0.0380 16 7 3.6337 -0.6575 0.0036 17 7 2.3017 -1.0910 0.0062 18 6 1.8500 -2.4845 0.0147 19 6 1.6955 -2.9538 1.4384 20 1 1.9124 -2.2813 2.2552 21 6 1.2782 -4.2419 1.6983 22 7 1.0145 -5.0610 0.7037 23 14 1.0873 -4.8237 3.4631 24 1 -0.2953 -4.5467 3.9288 25 1 1.3503 -6.2835 3.5343 26 1 2.0549 -4.1036 4.3292 27 1 -0.3633 0.0057 1.0277 28 1 -0.3634 0.8871 -0.5187 29 1 -0.3634 -0.8929 -0.5088 30 1 1.9719 2.1211 0.0004 31 1 5.6584 1.0777 -0.0065 32 1 6.4540 3.4892 -0.9088 33 1 6.4538 3.4985 0.8711 34 1 4.5034 5.3323 -0.0281 35 1 8.0628 4.7386 -0.0258 36 1 9.7549 6.5551 -0.0364 37 1 8.9715 8.9148 -0.0483 38 1 6.5583 9.3856 -0.0390 39 1 0.8913 -2.5590 -0.4985 40 1 2.5845 -3.1076 -0.4955 41 1 0.7205 -5.9672 0.8865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901282114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:12 Heat of formation + Delta-G solvation = 66.108535 kcal Electronic energy + Delta-G solvation = -24353.876494 eV Core-core repulsion = 20655.887341 eV Total energy + Delta-G solvation = -3697.989153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36447 -41.20576 -40.56686 -36.78537 -36.22033 -35.34326 -33.32284 -33.10625 -32.67389 -31.10746 -28.97282 -27.98009 -27.77121 -25.06647 -24.42125 -23.43452 -22.44765 -21.34469 -20.82940 -19.04666 -18.80036 -18.03094 -17.63005 -17.23979 -17.07927 -17.01687 -16.44543 -16.22272 -15.91940 -15.60017 -15.25463 -15.20125 -14.72872 -14.37625 -14.22452 -13.99562 -13.82983 -13.78475 -13.68192 -13.50597 -13.15194 -12.87507 -12.67455 -12.62318 -12.26682 -12.14162 -11.59967 -11.39801 -11.26028 -11.05621 -10.74009 -10.63315 -10.31770 -9.62576 -9.18696 -8.67575 -8.34030 -6.51394 0.44090 0.60996 0.83705 1.17631 1.33048 1.37575 1.38928 1.49989 2.02271 2.14313 2.32397 2.45076 2.96016 3.07016 3.37123 3.81317 3.85602 4.07085 4.14189 4.23016 4.30321 4.32461 4.41109 4.46201 4.55860 4.69463 4.73080 4.87293 4.94435 4.95330 4.97741 5.11076 5.20513 5.21995 5.47509 5.52519 5.68063 5.79676 5.89113 6.01992 6.22678 6.23047 6.53510 6.60283 6.88103 7.05080 7.19510 7.28989 8.72046 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029807 B = 0.002116 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.161354 B =13232.124313 C =13582.248084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.086 3.914 3 C -0.300 4.300 4 C 0.272 3.728 5 N -0.616 5.616 6 C 0.517 3.483 7 O -0.544 6.544 8 C 0.127 3.873 9 N -0.725 5.725 10 C 0.384 3.616 11 C -0.247 4.247 12 C -0.036 4.036 13 C -0.236 4.236 14 C 0.130 3.870 15 N -0.582 5.582 16 N -0.354 5.354 17 N -0.341 5.341 18 C 0.274 3.726 19 C -0.552 4.552 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.917 5.917 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.276 1.276 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.166 0.834 31 H 0.431 0.569 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.406 0.594 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.171 0.829 39 H 0.052 0.948 40 H 0.026 0.974 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.401 21.832 -2.112 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C -0.331 4.331 4 C 0.018 3.982 5 N -0.266 5.266 6 C 0.304 3.696 7 O -0.419 6.419 8 C -0.001 4.001 9 N -0.361 5.361 10 C 0.149 3.851 11 C -0.272 4.272 12 C -0.062 4.062 13 C -0.258 4.258 14 C -0.027 4.027 15 N -0.301 5.301 16 N -0.184 5.184 17 N -0.124 5.124 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.067 0.933 21 C -0.179 4.179 22 N -0.555 5.555 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.199 1.199 26 H -0.201 1.201 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.184 0.816 31 H 0.269 0.731 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.243 0.757 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.173 0.827 38 H 0.188 0.812 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.452 20.830 -2.174 24.891 hybrid contribution 0.083 -0.404 0.702 0.814 sum 13.535 20.427 -1.473 24.548 Atomic orbital electron populations 1.20469 0.85468 1.04198 1.03943 1.21749 0.96655 0.86552 0.99452 1.21433 0.90102 0.99849 1.21667 1.19270 0.88717 0.89216 1.00978 1.42373 1.07257 1.04757 1.72210 1.21176 0.92044 0.81472 0.74911 1.90658 1.28387 1.74002 1.48852 1.21132 0.92577 0.79159 1.07223 1.44201 1.08360 1.02329 1.81192 1.18526 0.88095 0.86888 0.91568 1.21741 0.90980 1.02566 1.11872 1.21767 1.00961 0.92035 0.91397 1.22170 0.96952 0.98548 1.08162 1.22828 0.89927 0.97683 0.92245 1.67079 1.41357 0.99779 1.21846 1.77175 0.99988 1.09944 1.31307 1.48792 1.01788 1.07522 1.54293 1.19259 0.94985 0.72396 0.97804 1.21419 1.47570 0.98344 0.91726 0.93261 1.25730 0.93980 0.95909 1.02238 1.70001 1.45010 1.07421 1.33108 0.85357 0.78932 0.77578 0.78630 1.19043 1.19904 1.20059 0.89840 0.87641 0.91256 0.81647 0.73055 0.85145 0.85344 0.75719 0.82652 0.82030 0.82662 0.81209 0.93033 0.95599 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.75 10.11 71.23 0.72 -2.03 16 2 C 0.09 3.58 6.92 41.38 0.29 3.87 16 3 C -0.30 -11.90 9.52 22.11 0.21 -11.69 16 4 C 0.27 10.47 8.11 133.33 1.08 11.55 16 5 N -0.62 -16.12 5.45 -307.51 -1.68 -17.80 16 6 C 0.52 12.28 7.87 87.66 0.69 12.97 16 7 O -0.54 -17.28 12.80 -3.07 -0.04 -17.32 16 8 C 0.13 1.76 5.37 85.64 0.46 2.22 16 9 N -0.73 -14.45 5.70 -348.81 -1.99 -16.44 16 10 C 0.38 7.68 7.65 133.07 1.02 8.70 16 11 C -0.25 -3.39 9.33 22.50 0.21 -3.18 16 12 C -0.04 -0.40 10.17 22.44 0.23 -0.17 16 13 C -0.24 -2.79 10.10 22.37 0.23 -2.57 16 14 C 0.13 2.12 11.17 84.62 0.95 3.06 16 15 N -0.58 -13.16 10.39 -193.26 -2.01 -15.16 16 16 N -0.35 -16.03 12.59 -54.46 -0.69 -16.71 16 17 N -0.34 -16.25 3.59 -338.46 -1.22 -17.47 16 18 C 0.27 14.34 5.99 85.63 0.51 14.86 16 19 C -0.55 -30.67 9.39 25.60 0.24 -30.43 16 20 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 21 C 0.02 1.22 5.46 84.65 0.46 1.68 16 22 N -0.92 -51.36 13.29 21.45 0.28 -51.08 16 23 Si 0.97 42.72 29.54 68.60 2.03 44.74 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 27 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.10 2.78 8.14 -2.39 -0.02 2.77 16 29 H 0.07 2.35 7.07 -2.39 -0.02 2.33 16 30 H 0.17 6.34 5.92 -2.91 -0.02 6.32 16 31 H 0.43 8.00 8.82 -92.71 -0.82 7.19 16 32 H 0.13 1.04 7.93 -2.38 -0.02 1.02 16 33 H 0.13 1.09 7.93 -2.39 -0.02 1.07 16 34 H 0.41 9.95 7.56 -92.71 -0.70 9.25 16 35 H 0.16 1.22 6.71 -2.91 -0.02 1.20 16 36 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.17 1.89 8.06 -2.92 -0.02 1.87 16 39 H 0.05 2.67 7.04 -2.39 -0.02 2.66 16 40 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -74.97 355.52 1.56 -73.41 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -0.43 Total: 24.96 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 7.29 Total: 8.86 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -7.29 Total: -134.65 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.04 Total: -17.32 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.97 1.56 -73.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901282114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.523 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds